miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCTGGAATCTTTAATTCGCAG

selected species: Drosophila melanogaster



12 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Drosophila melanogaster GSM399107-16288 TCTGGAATCTTTAATTCGCAGT TGTGAGTTGATCGATTTCGAGGTT down 2 2


Secondary structure

CATGATGCCCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGTCAGTG
---------------------------------------------------------------TCTGGAATCTTTAATTCGCA 	3
---------------------------------------------------------------TCTGGAATCTTTAATTCGCAG 	3
---------------------------------------------------------------TCTGGAATCTTTAATTCGC 	1
---------------------------------------------------------------TCTGGAATCTTTAATTCGCAGT 	11
----------------------------------------------------------------CTGGAATCTTTAATTCGCAGT 	1

Overlaps with: MNEST036586
Overlaps with miRBase pre-miRNAs: dme-mir-1005
HuntMi prediction: not a miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Drosophila melanogaster GSM466487_wt_total TCTGGAATCTTTAATTCGCAG GTGAGTTGATCGATTTCGAGGTT down 1 2


Secondary structure

ATGATGCCCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGTCAGT
----------------------GTGAGTTGATCGATTTCGAGGTT 	1
--------------------------------------------------------------TCTGGAATCTTTAATTCGC 	2
--------------------------------------------------------------TCTGGAATCTTTAATTCGCA 	11
--------------------------------------------------------------TCTGGAATCTTTAATTCGCAGTT 	1
--------------------------------------------------------------TCTGGAATCTTTAATTCGCAG 	79
--------------------------------------------------------------TCTGGAATCTTTAATTCGCAGT 	7
---------------------------------------------------------------CTGGAATCTTTAATTCGCAG 	1

Overlaps with: MNEST036586
Overlaps with miRBase pre-miRNAs: dme-mir-1005
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Drosophila melanogaster GSM360262-14327 TCTGGAATCTTTAATTCGCAGT TGTGAGTTGATCGATTTCGAGGTT down 2 2


Secondary structure

CATGATGCCCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGTCAGTG
-----------------------GTGAGTTGATCGATTTCGAGGTT 	1
--------------------------------------------------------------ATCTGGAATCTTTAATTCGCAG 	1
---------------------------------------------------------------TCTGGAATCTTTAATTCGCA 	3
---------------------------------------------------------------TCTGGAATCTTTAATTCGCAG 	9
---------------------------------------------------------------TCTGGAATCTTTAATTCGCAGT 	25

Overlaps with: MNEST036586
Overlaps with miRBase pre-miRNAs: dme-mir-1005
HuntMi prediction: not a miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Drosophila melanogaster GSM385822-16273 TCTGGAATCTTTAATTCGCAGT TGTGAGTTGATCGATTTCGAGGTT down 2 2


Secondary structure

CATGATGCCCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGTCAGTG
---------------------------------------------------------------TCTGGAATCTTTAATTCGCAG 	7
---------------------------------------------------------------TCTGGAATCTTTAATTCGCAGT 	8
----------------------------------------------------------------CTGGAATCTTTAATTCGCAGT 	1

Overlaps with: MNEST036586
Overlaps with miRBase pre-miRNAs: dme-mir-1005
HuntMi prediction: not a miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Drosophila melanogaster GSM466496_r2d2_homozygotes_untreated TCTGGAATCTTTAATTCGCAG GTGAGTTGATCGATTTCGAGGTT down 1 2


Secondary structure

ATGATGCCCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGTCAGT
--------------------------------------------------------------TCTGGAATCTTTAATTCGC 	25
--------------------------------------------------------------TCTGGAATCTTTAATTCGCA 	31
--------------------------------------------------------------TCTGGAATCTTTAATTCGCAGTT 	6
--------------------------------------------------------------TCTGGAATCTTTAATTCGCAG 	144
--------------------------------------------------------------TCTGGAATCTTTAATTCGCAGT 	3
---------------------------------------------------------------CTGGAATCTTTAATTCGCAG 	1

Overlaps with: MNEST036586
Overlaps with miRBase pre-miRNAs: dme-mir-1005
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Drosophila melanogaster GSM286607-9796 TCTGGAATCTTTAATTCGCAG GTGAGTTGATCGATTTCGAGGTT down 1 2


Secondary structure

ATGATGCCCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGTCAGT
--------------------------------------------------------------TCTGGAATCTTTAATTCGCAG 	11

Overlaps with: MNEST036586
Overlaps with miRBase pre-miRNAs: dme-mir-1005
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Drosophila melanogaster GSM399101-5265 TCTGGAATCTTTAATTCGCAG GTGAGTTGATCGATTTCGAGGTT down 1 2


Secondary structure

ATGATGCCCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGTCAGT
----------------------GTGAGTTGATCGATTTCGAGGTT 	2
--------------------------------------------------------------TCTGGAATCTTTAATTCGCA 	4
--------------------------------------------------------------TCTGGAATCTTTAATTCGCAGTT 	1
--------------------------------------------------------------TCTGGAATCTTTAATTCGC 	1
--------------------------------------------------------------TCTGGAATCTTTAATTCGCAG 	9
--------------------------------------------------------------TCTGGAATCTTTAATTCGCAGT 	2

Overlaps with: MNEST036586
Overlaps with miRBase pre-miRNAs: dme-mir-1005
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Drosophila melanogaster GSM286604-9792 TCTGGAATCTTTAATTCGCAG GTGAGTTGATCGATTTCGAGGTT down 1 2


Secondary structure

ATGATGCCCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGTCAGT
--------------------------------------------------------------TCTGGAATCTTTAATTCGCA 	2
--------------------------------------------------------------TCTGGAATCTTTAATTCGCAG 	5
--------------------------------------------------------------TCTGGAATCTTTAATTCGCAGT 	2

Overlaps with: MNEST036586
Overlaps with miRBase pre-miRNAs: dme-mir-1005
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Drosophila melanogaster GSM385744-16261 TCTGGAATCTTTAATTCGCAGT TGTGAGTTGATCGATTTCGAGGTT down 2 2


Secondary structure

CATGATGCCCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGTCAGTG
---------------------------------------------------------------TCTGGAATCTTTAATTCGCA 	1
---------------------------------------------------------------TCTGGAATCTTTAATTCGCAG 	5
---------------------------------------------------------------TCTGGAATCTTTAATTCGCAGT 	11

Overlaps with: MNEST036586
Overlaps with miRBase pre-miRNAs: dme-mir-1005
HuntMi prediction: not a miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Drosophila melanogaster GSM322208-14317 TCTGGAATCTTTAATTCGCAGT TGTGAGTTGATCGATTTCGAGGTT down 2 2


Secondary structure

CATGATGCCCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGTCAGTG
---------------------------------------------------------------TCTGGAATCTTTAATTCGCAGT 	5

Overlaps with: MNEST036586
Overlaps with miRBase pre-miRNAs: dme-mir-1005
HuntMi prediction: not a miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Drosophila melanogaster GSM385748-16264 TCTGGAATCTTTAATTCGCAGT TGTGAGTTGATCGATTTCGAGGTT down 2 2


Secondary structure

CATGATGCCCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGTCAGTG
---------------------------------------------------------------TCTGGAATCTTTAATTCGCAG 	13
---------------------------------------------------------------TCTGGAATCTTTAATTCGCA 	1
---------------------------------------------------------------TCTGGAATCTTTAATTCGCAGTT 	1
---------------------------------------------------------------TCTGGAATCTTTAATTCGCAGT 	22

Overlaps with: MNEST036586
Overlaps with miRBase pre-miRNAs: dme-mir-1005
HuntMi prediction: not a miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Drosophila melanogaster GSM466492_dcr-2_homozygotes_untreated TCTGGAATCTTTAATTCGCAG GTGAGTTGATCGATTTCGAGGTT down 1 2


Secondary structure

ATGATGCCCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGTCAGT
--------------------------------------------------------------TCTGGAATCTTTAATTCGCAG 	92
--------------------------------------------------------------TCTGGAATCTTTAATTCGC 	4
--------------------------------------------------------------TCTGGAATCTTTAATTCGCA 	12
--------------------------------------------------------------TCTGGAATCTTTAATTCGCAGT 	2

Overlaps with: MNEST036586
Overlaps with miRBase pre-miRNAs: dme-mir-1005
HuntMi prediction: true miRNA