miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TCTGGTGTTGAGATAGTTGAC

selected species: Arabidopsis thaliana

3 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Arabidopsis thaliana	GSM304282	TCTGGTGTTGAGATAGTTGAC	CACCTATCTCAACTCCAGGAT	down	3	0

Secondary structure

TGGCCATGTATGCCCACCATACAGATTTCCATACGGTAGAAGAAAGTATCACCTATCTCAACTCCAGGATTGGACCAGTACTAGGCTCATCATAGTTAAGCCACAATCCACGATTCCTCATCAGCTATAAAAGCAAAACCTTCATATCTATCCTTGTTTCTAAACCAGTCTCATAGATATGAAGGCTTTGTTTCTGATGAAGGATTGTGGGATTGTTGCTTAACACTGATGAGCATATTATTGGTTCAATTCTGGTGTTGAGATAGTTGACACTTCTTATACCGTATGAAAACATGTGTGGTGGGCTTAGACAACCATAC
-----------------------------------------------------TATCTCAACTCCAGGATTGGA 	1
-------------------------------------------------------TCTCAACTCCAGGATTGGACC 	1
--------------------------------------------------------CTCAACTCCAGGATTGGACCA 	1
----------------------------------------------------------CAACTCCAGGATTGGACCAGTACT 	1
------------------------------------------------------------ACTCCAGGATTGGACCAGTAC 	1
------------------------------------------------------------------GGATTGGACCAGTACTAGGCTCAT 	1
---------------------------------------------------------------------TTGGACCAGTACTAGGCTCATCAT 	1
---------------------------------------------------------------------TTGGACCAGTACTAGGCTCAT 	1
----------------------------------------------------------------------------------------------GTTAAGCCACAATCCACGAT 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTGATGAAGGATTGTGGGAT 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGAAGGATTGTGGGATTGTTG 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTGGTTCAATTCTGGTGTTGAG 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTGGTTCAATTCTGGTGTTGA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGGTTCAATTCTGGTGTTGAGA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGGTTCAATTCTGGTGTTGAG 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGGTGTTGAGATAGTTGA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGGTGTTGAGATAGTTGAC 	7

Overlaps with: MNEST040206 MNEST040207
Overlaps with miRBase pre-miRNAs: ath-MIR869
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Arabidopsis thaliana	GSM415785	TCTGGTGTTGAGATAGTTGAC	CACCTATCTCAACTCCAGGAT	down	3	0

Secondary structure

TGGCCATGTATGCCCACCATACAGATTTCCATACGGTAGAAGAAAGTATCACCTATCTCAACTCCAGGATTGGACCAGTACTAGGCTCATCATAGTTAAGCCACAATCCACGATTCCTCATCAGCTATAAAAGCAAAACCTTCATATCTATCCTTGTTTCTAAACCAGTCTCATAGATATGAAGGCTTTGTTTCTGATGAAGGATTGTGGGATTGTTGCTTAACACTGATGAGCATATTATTGGTTCAATTCTGGTGTTGAGATAGTTGACACTTCTTATACCGTATGAAAACATGTGTGGTGGGCTTAGACAACCATAC
--------------------------TTCCATACGGTAGAAGAAAG 	1
---------------------------TCCATACGGTAGAAGAAAGTATC 	3
---------------------------TCCATACGGTAGAAGAAAGTAT 	1
-------------------------------TACGGTAGAAGAAAGTATCACC 	1
----------------------------------------------------------------------TGGACCAGTACTAGGCTCATC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGGTGTTGAGATAGTTGAC 	44
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGAAAACATGTGTGGTGGGC 	2

Overlaps with: MNEST040206 MNEST040207
Overlaps with miRBase pre-miRNAs: ath-MIR869
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Arabidopsis thaliana	GSM518432-13544	TCTGGTGTTGAGATAGTTGAC	CACCTATCTCAACTCCAGGAT	down	3	0

Secondary structure

TGGCCATGTATGCCCACCATACAGATTTCCATACGGTAGAAGAAAGTATCACCTATCTCAACTCCAGGATTGGACCAGTACTAGGCTCATCATAGTTAAGCCACAATCCACGATTCCTCATCAGCTATAAAAGCAAAACCTTCATATCTATCCTTGTTTCTAAACCAGTCTCATAGATATGAAGGCTTTGTTTCTGATGAAGGATTGTGGGATTGTTGCTTAACACTGATGAGCATATTATTGGTTCAATTCTGGTGTTGAGATAGTTGACACTTCTTATACCGTATGAAAACATGTGTGGTGGGCTTAGACAACCATAC
-----------------------------------------------------TATCTCAACTCCAGGATTGGA 	1
-------------------------------------------------------TCTCAACTCCAGGATTGGACC 	1
--------------------------------------------------------CTCAACTCCAGGATTGGACCA 	1
----------------------------------------------------------CAACTCCAGGATTGGACCAGTACT 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAGGATTGTGGGATTGTTGC 	16
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAGGATTGTGGGATTGTTGCTTA 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAGGATTGTGGGATTGTTGCT 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGATTGTGGGATTGTTGCTTAAC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTGGGATTGTTGCTTAACAC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGATTGTTGCTTAACACTGA 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGCATATTATTGGTTCAAT 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGGTTCAATTCTGGTGTTGAGA 	7
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTTCAATTCTGGTGTTGAG 	2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTCAATTCTGGTGTTGAGA 	3
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCAATTCTGGTGTTGAGAT 	4
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGGTGTTGAGATAGTTGAC 	22

Overlaps with: MNEST040206 MNEST040207
Overlaps with miRBase pre-miRNAs: ath-MIR869
HuntMi prediction: true miRNA