miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCTGGTTGGATTGTAGGCCTC

selected species: Physcomitrella patens



18 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM115097 TCTGGTTGGATTGTAGGCCTC CGCCTTGCAATTCAAGCAGACT down 2 1


Secondary structure

TTTCTGCCATGAGTTTTGTAGACGCCTTGCAATTCAAGCAGACTCTATTATGCGGCTGCCGCGGACACTACGTGGTTTGTTGTGCTTCAGTCTGGTTGGATTGTAGGCCTCCGCAAAACTTCATGACCAT
----------------------CGCCTTGCAATTCAAGCAGACT 	68
----------------------CGCCTTGCAATTCAAGCAGAC 	1
-----------------------------------------------------------------------------------------GTCTGGTTGGATTGTAGGCCTC 	2
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTCC 	3
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTC 	420
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCT 	74
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCC 	1
-------------------------------------------------------------------------------------------CTGGTTGGATTGTAGGCCTC 	1
-------------------------------------------------------------------------------------------CTGGTTGGATTGTAGGCCT 	1
--------------------------------------------------------------------------------------------TGGTTGGATTGTAGGCCTC 	2


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM115097 TCTGGTTGGATTGTAGGCCTC CGCCCTGCAATTCAAGCAGACT down 2 1


Secondary structure

GACGAGATCGCGGCCGTCATGAGTTTTGTCGACGCCCTGCAATTCAAGCAGACTCGATTACAATGTTTGCCGCCGACGTCACGCATGTCACGTGGTTATTTGTACTTCAGTCTGGTTGGATTGTAGGCCTCCGCAAGGCTTCATGACTCACTCAACTGCT
--------------------------------CGCCCTGCAATTCAAGCAGACT 	5
-------------------------------------------------------------------------------------------------------------GTCTGGTTGGATTGTAGGCCTC 	2
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTCC 	3
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTC 	420
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCT 	74
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCC 	1
---------------------------------------------------------------------------------------------------------------CTGGTTGGATTGTAGGCCTC 	1
---------------------------------------------------------------------------------------------------------------CTGGTTGGATTGTAGGCCT 	1
----------------------------------------------------------------------------------------------------------------TGGTTGGATTGTAGGCCTC 	2

Overlaps with: MNEST039581 MNEST051450
Overlaps with miRBase pre-miRNAs: ppt-MIR1024a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM313212 TCTGGTTGGATTGTAGGCCTC CGCCTTGCAATTCAAGCAGACT down 2 1


Secondary structure

TTTCTGCCATGAGTTTTGTAGACGCCTTGCAATTCAAGCAGACTCTATTATGCGGCTGCCGCGGACACTACGTGGTTTGTTGTGCTTCAGTCTGGTTGGATTGTAGGCCTCCGCAAAACTTCATGACCAT
----------------------CGCCTTGCAATTCAAGCAGAC 	7
----------------------CGCCTTGCAATTCAAGCAGACT 	151
----------------------CGCCTTGCAATTCAAGCAGA 	6
----------------------CGCCTTGCAATTCAAGCAG 	1
-----------------------GCCTTGCAATTCAAGCAGACT 	4
------------------------CCTTGCAATTCAAGCAGACT 	1
-------------------------CTTGCAATTCAAGCAGACT 	1
-----------------------------------------------------------------------------------------GTCTGGTTGGATTGTAGGCCTC 	1
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCC 	37
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTCC 	73
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTC 	23293
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCT 	1396
-------------------------------------------------------------------------------------------CTGGTTGGATTGTAGGCCTCC 	1
-------------------------------------------------------------------------------------------CTGGTTGGATTGTAGGCCT 	14
-------------------------------------------------------------------------------------------CTGGTTGGATTGTAGGCCTC 	122
--------------------------------------------------------------------------------------------TGGTTGGATTGTAGGCCTCCG 	2
--------------------------------------------------------------------------------------------TGGTTGGATTGTAGGCCTC 	98
---------------------------------------------------------------------------------------------GGTTGGATTGTAGGCCTCCG 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Physcomitrella patens GSM313212 TCTGGTTGGATTGTAGGCCTC CGCCCTGCAATTCAAGCAGACT down 2 1


Secondary structure

GACGAGATCGCGGCCGTCATGAGTTTTGTCGACGCCCTGCAATTCAAGCAGACTCGATTACAATGTTTGCCGCCGACGTCACGCATGTCACGTGGTTATTTGTACTTCAGTCTGGTTGGATTGTAGGCCTCCGCAAGGCTTCATGACTCACTCAACTGCT
--------------------------------CGCCCTGCAATTCAAGCAGACT 	80
--------------------------------CGCCCTGCAATTCAAGCAGA 	1
--------------------------------CGCCCTGCAATTCAAGCAGAC 	3
-------------------------------------------------------------------------------------------------------------GTCTGGTTGGATTGTAGGCCTC 	1
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCC 	37
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTCC 	73
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTC 	23293
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCT 	1396
---------------------------------------------------------------------------------------------------------------CTGGTTGGATTGTAGGCCTCC 	1
---------------------------------------------------------------------------------------------------------------CTGGTTGGATTGTAGGCCT 	14
---------------------------------------------------------------------------------------------------------------CTGGTTGGATTGTAGGCCTC 	122
----------------------------------------------------------------------------------------------------------------TGGTTGGATTGTAGGCCTCCG 	2
----------------------------------------------------------------------------------------------------------------TGGTTGGATTGTAGGCCTC 	98
-----------------------------------------------------------------------------------------------------------------GGTTGGATTGTAGGCCTCCG 	1

Overlaps with: MNEST039581 MNEST051450
Overlaps with miRBase pre-miRNAs: ppt-MIR1024a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Physcomitrella patens GSM115095 TCTGGTTGGATTGTAGGCCTC CGCCTTGCAATTCAAGCAGACT down 2 1


Secondary structure

TTTCTGCCATGAGTTTTGTAGACGCCTTGCAATTCAAGCAGACTCTATTATGCGGCTGCCGCGGACACTACGTGGTTTGTTGTGCTTCAGTCTGGTTGGATTGTAGGCCTCCGCAAAACTTCATGACCAT
--------------------GACGCCTTGCAATTCAAGCAGA 	2
----------------------CGCCTTGCAATTCAAGCAGACT 	13
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTC 	204
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCT 	11
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCC 	1
-------------------------------------------------------------------------------------------CTGGTTGGATTGTAGGCCTC 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Physcomitrella patens GSM115095 TCTGGTTGGATTGTAGGCCTC CGCCCTGCAATTCAAGCAGACT down 2 1


Secondary structure

GACGAGATCGCGGCCGTCATGAGTTTTGTCGACGCCCTGCAATTCAAGCAGACTCGATTACAATGTTTGCCGCCGACGTCACGCATGTCACGTGGTTATTTGTACTTCAGTCTGGTTGGATTGTAGGCCTCCGCAAGGCTTCATGACTCACTCAACTGCT
--------------------------------CGCCCTGCAATTCAAGCAGACT 	1
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTC 	204
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCT 	11
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCC 	1
---------------------------------------------------------------------------------------------------------------CTGGTTGGATTGTAGGCCTC 	1

Overlaps with: MNEST039581 MNEST051450
Overlaps with miRBase pre-miRNAs: ppt-MIR1024a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Physcomitrella patens GSM313213 TCTGGTTGGATTGTAGGCCTC CGCCTTGCAATTCAAGCAGACT down 2 1


Secondary structure

TTTCTGCCATGAGTTTTGTAGACGCCTTGCAATTCAAGCAGACTCTATTATGCGGCTGCCGCGGACACTACGTGGTTTGTTGTGCTTCAGTCTGGTTGGATTGTAGGCCTCCGCAAAACTTCATGACCAT
--------------------GACGCCTTGCAATTCAAGCAGA 	1
----------------------CGCCTTGCAATTCAAGCAGAC 	10
----------------------CGCCTTGCAATTCAAGCAGACT 	149
----------------------CGCCTTGCAATTCAAGCAGA 	2
-----------------------GCCTTGCAATTCAAGCAGACT 	1
------------------------CCTTGCAATTCAAGCAGACT 	1
--------------------------------------------------------------------------------------TCAGTCTGGTTGGATTGTAGG 	1
-----------------------------------------------------------------------------------------GTCTGGTTGGATTGTAGGCCTC 	1
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCC 	22
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTCC 	78
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTC 	25137
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCT 	1471
-------------------------------------------------------------------------------------------CTGGTTGGATTGTAGGCCT 	15
-------------------------------------------------------------------------------------------CTGGTTGGATTGTAGGCCTC 	154
--------------------------------------------------------------------------------------------TGGTTGGATTGTAGGCCTCCG 	4
--------------------------------------------------------------------------------------------TGGTTGGATTGTAGGCCTC 	100
--------------------------------------------------------------------------------------------TGGTTGGATTGTAGGCCTCC 	3


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Physcomitrella patens GSM313213 TCTGGTTGGATTGTAGGCCTC CGCCCTGCAATTCAAGCAGACT down 2 1


Secondary structure

GACGAGATCGCGGCCGTCATGAGTTTTGTCGACGCCCTGCAATTCAAGCAGACTCGATTACAATGTTTGCCGCCGACGTCACGCATGTCACGTGGTTATTTGTACTTCAGTCTGGTTGGATTGTAGGCCTCCGCAAGGCTTCATGACTCACTCAACTGCT
--------------------------------CGCCCTGCAATTCAAGCAGACT 	95
--------------------------------CGCCCTGCAATTCAAGCAGAC 	5
--------------------------------CGCCCTGCAATTCAAGCAGA 	1
--------------------------------CGCCCTGCAATTCAAGCAGACTC 	1
---------------------------------GCCCTGCAATTCAAGCAGACT 	2
----------------------------------------------------------------------------------------------------------TCAGTCTGGTTGGATTGTAGG 	1
-------------------------------------------------------------------------------------------------------------GTCTGGTTGGATTGTAGGCCTC 	1
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCC 	22
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTCC 	78
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTC 	25137
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCT 	1471
---------------------------------------------------------------------------------------------------------------CTGGTTGGATTGTAGGCCT 	15
---------------------------------------------------------------------------------------------------------------CTGGTTGGATTGTAGGCCTC 	154
----------------------------------------------------------------------------------------------------------------TGGTTGGATTGTAGGCCTCCG 	4
----------------------------------------------------------------------------------------------------------------TGGTTGGATTGTAGGCCTC 	100
----------------------------------------------------------------------------------------------------------------TGGTTGGATTGTAGGCCTCC 	3

Overlaps with: MNEST039581 MNEST051450
Overlaps with miRBase pre-miRNAs: ppt-MIR1024a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Physcomitrella patens GSM313215 TCTGGTTGGATTGTAGGCCTC CGCCTTGCAATTCAAGCAGACT down 2 1


Secondary structure

TTTCTGCCATGAGTTTTGTAGACGCCTTGCAATTCAAGCAGACTCTATTATGCGGCTGCCGCGGACACTACGTGGTTTGTTGTGCTTCAGTCTGGTTGGATTGTAGGCCTCCGCAAAACTTCATGACCAT
----------------------CGCCTTGCAATTCAAGCAGACT 	16
----------------------CGCCTTGCAATTCAAGCAGAC 	2
----------------------CGCCTTGCAATTCAAGCAGA 	1
----------------------------------------------------------------------------------------AGTCTGGTTGGATTGTAGG 	1
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTC 	10250
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCT 	847
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCC 	17
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTCC 	20
-------------------------------------------------------------------------------------------CTGGTTGGATTGTAGGCCTC 	78
-------------------------------------------------------------------------------------------CTGGTTGGATTGTAGGCCT 	6
--------------------------------------------------------------------------------------------TGGTTGGATTGTAGGCCTC 	38


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Physcomitrella patens GSM313215 TCTGGTTGGATTGTAGGCCTC CGCCCTGCAATTCAAGCAGACT down 2 1


Secondary structure

GACGAGATCGCGGCCGTCATGAGTTTTGTCGACGCCCTGCAATTCAAGCAGACTCGATTACAATGTTTGCCGCCGACGTCACGCATGTCACGTGGTTATTTGTACTTCAGTCTGGTTGGATTGTAGGCCTCCGCAAGGCTTCATGACTCACTCAACTGCT
--------------------------------CGCCCTGCAATTCAAGCAGACT 	7
--------------------------------CGCCCTGCAATTCAAGCAGAC 	1
------------------------------------------------------------------------------------------------------------AGTCTGGTTGGATTGTAGG 	1
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTC 	10250
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCT 	847
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCC 	17
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTCC 	20
---------------------------------------------------------------------------------------------------------------CTGGTTGGATTGTAGGCCTC 	78
---------------------------------------------------------------------------------------------------------------CTGGTTGGATTGTAGGCCT 	6
----------------------------------------------------------------------------------------------------------------TGGTTGGATTGTAGGCCTC 	38

Overlaps with: MNEST039581 MNEST051450
Overlaps with miRBase pre-miRNAs: ppt-MIR1024a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Physcomitrella patens GSM115096 TCTGGTTGGATTGTAGGCCTC CGCCTTGCAATTCAAGCAGACT down 2 1


Secondary structure

TTTCTGCCATGAGTTTTGTAGACGCCTTGCAATTCAAGCAGACTCTATTATGCGGCTGCCGCGGACACTACGTGGTTTGTTGTGCTTCAGTCTGGTTGGATTGTAGGCCTCCGCAAAACTTCATGACCAT
----------------------CGCCTTGCAATTCAAGCAGACT 	54
----------------------CGCCTTGCAATTCAAGCAGAC 	2
----------------------CGCCTTGCAATTCAAGCAG 	1
------------------------CCTTGCAATTCAAGCAGACT 	1
-----------------------------------------------------------------------------------------GTCTGGTTGGATTGTAGGCCT 	1
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTCC 	5
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTC 	594
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCC 	4
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCT 	143
-------------------------------------------------------------------------------------------CTGGTTGGATTGTAGGCCT 	4
-------------------------------------------------------------------------------------------CTGGTTGGATTGTAGGCCTC 	10
--------------------------------------------------------------------------------------------TGGTTGGATTGTAGGCCTC 	2
---------------------------------------------------------------------------------------------GGTTGGATTGTAGGCCTCC 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Physcomitrella patens GSM115096 TCTGGTTGGATTGTAGGCCTC CGCCCTGCAATTCAAGCAGACT down 2 1


Secondary structure

GACGAGATCGCGGCCGTCATGAGTTTTGTCGACGCCCTGCAATTCAAGCAGACTCGATTACAATGTTTGCCGCCGACGTCACGCATGTCACGTGGTTATTTGTACTTCAGTCTGGTTGGATTGTAGGCCTCCGCAAGGCTTCATGACTCACTCAACTGCT
--------------------------------CGCCCTGCAATTCAAGCAGACT 	13
-------------------------------------------------------------------------------------------------------------GTCTGGTTGGATTGTAGGCCT 	1
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTCC 	5
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTC 	594
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCC 	4
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCT 	143
---------------------------------------------------------------------------------------------------------------CTGGTTGGATTGTAGGCCT 	4
---------------------------------------------------------------------------------------------------------------CTGGTTGGATTGTAGGCCTC 	10
----------------------------------------------------------------------------------------------------------------TGGTTGGATTGTAGGCCTC 	2
-----------------------------------------------------------------------------------------------------------------GGTTGGATTGTAGGCCTCC 	1

Overlaps with: MNEST039581 MNEST051450
Overlaps with miRBase pre-miRNAs: ppt-MIR1024a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Physcomitrella patens GSM313216 TCTGGTTGGATTGTAGGCCTC CGCCTTGCAATTCAAGCAGACT down 2 1


Secondary structure

TTTCTGCCATGAGTTTTGTAGACGCCTTGCAATTCAAGCAGACTCTATTATGCGGCTGCCGCGGACACTACGTGGTTTGTTGTGCTTCAGTCTGGTTGGATTGTAGGCCTCCGCAAAACTTCATGACCAT
----------------------CGCCTTGCAATTCAAGCAGACTC 	2
----------------------CGCCTTGCAATTCAAGCAGAC 	1
----------------------CGCCTTGCAATTCAAGCAGACT 	29
----------------------CGCCTTGCAATTCAAGCAGA 	3
----------------------CGCCTTGCAATTCAAGCAG 	1
--------------------------------------------------------------------------------------TCAGTCTGGTTGGATTGTAGG 	1
-----------------------------------------------------------------------------------------GTCTGGTTGGATTGTAGGCCTC 	2
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTCCG 	2
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCC 	30
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTCC 	109
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTC 	10571
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTCCGC 	7
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCT 	706
-------------------------------------------------------------------------------------------CTGGTTGGATTGTAGGCCT 	8
-------------------------------------------------------------------------------------------CTGGTTGGATTGTAGGCCTC 	81
--------------------------------------------------------------------------------------------TGGTTGGATTGTAGGCCTCCG 	3
--------------------------------------------------------------------------------------------TGGTTGGATTGTAGGCCTC 	35
--------------------------------------------------------------------------------------------TGGTTGGATTGTAGGCCTCCGC 	1
--------------------------------------------------------------------------------------------TGGTTGGATTGTAGGCCTCC 	2
---------------------------------------------------------------------------------------------GGTTGGATTGTAGGCCTCCG 	3


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Physcomitrella patens GSM313216 TCTGGTTGGATTGTAGGCCTC CGCCCTGCAATTCAAGCAGACT down 2 1


Secondary structure

GACGAGATCGCGGCCGTCATGAGTTTTGTCGACGCCCTGCAATTCAAGCAGACTCGATTACAATGTTTGCCGCCGACGTCACGCATGTCACGTGGTTATTTGTACTTCAGTCTGGTTGGATTGTAGGCCTCCGCAAGGCTTCATGACTCACTCAACTGCT
--------------------------------CGCCCTGCAATTCAAGCAGACT 	4
----------------------------------------------------------------------------------------------------------TCAGTCTGGTTGGATTGTAGG 	1
-------------------------------------------------------------------------------------------------------------GTCTGGTTGGATTGTAGGCCTC 	2
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTCCG 	2
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCC 	30
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTCC 	109
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTC 	10571
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTCCGC 	7
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCT 	706
---------------------------------------------------------------------------------------------------------------CTGGTTGGATTGTAGGCCT 	8
---------------------------------------------------------------------------------------------------------------CTGGTTGGATTGTAGGCCTC 	81
----------------------------------------------------------------------------------------------------------------TGGTTGGATTGTAGGCCTCCG 	3
----------------------------------------------------------------------------------------------------------------TGGTTGGATTGTAGGCCTC 	35
----------------------------------------------------------------------------------------------------------------TGGTTGGATTGTAGGCCTCCGC 	1
----------------------------------------------------------------------------------------------------------------TGGTTGGATTGTAGGCCTCC 	2
-----------------------------------------------------------------------------------------------------------------GGTTGGATTGTAGGCCTCCG 	3

Overlaps with: MNEST039581 MNEST051450
Overlaps with miRBase pre-miRNAs: ppt-MIR1024a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Physcomitrella patens GSM313214 TCTGGTTGGATTGTAGGCCTC CGCCTTGCAATTCAAGCAGACT down 2 1


Secondary structure

TTTCTGCCATGAGTTTTGTAGACGCCTTGCAATTCAAGCAGACTCTATTATGCGGCTGCCGCGGACACTACGTGGTTTGTTGTGCTTCAGTCTGGTTGGATTGTAGGCCTCCGCAAAACTTCATGACCAT
-----------AGTTTTGTAGACGCCTTGCAAT 	1
----------------------CGCCTTGCAATTCAAGCAGAC 	5
----------------------CGCCTTGCAATTCAAGCAGACTC 	1
----------------------CGCCTTGCAATTCAAGCAGACT 	47
----------------------CGCCTTGCAATTCAAGCAGA 	1
--------------------------------------------------------------------------------------TCAGTCTGGTTGGATTGTAGG 	1
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTC 	20937
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTCCGC 	1
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTCCG 	1
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCC 	31
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCT 	1491
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTCC 	24
-------------------------------------------------------------------------------------------CTGGTTGGATTGTAGGCCT 	22
-------------------------------------------------------------------------------------------CTGGTTGGATTGTAGGCCTC 	133
--------------------------------------------------------------------------------------------TGGTTGGATTGTAGGCCTC 	75
--------------------------------------------------------------------------------------------TGGTTGGATTGTAGGCCTCC 	1
---------------------------------------------------------------------------------------------GGTTGGATTGTAGGCCTCC 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Physcomitrella patens GSM313214 TCTGGTTGGATTGTAGGCCTC CGCCCTGCAATTCAAGCAGACT down 2 1


Secondary structure

GACGAGATCGCGGCCGTCATGAGTTTTGTCGACGCCCTGCAATTCAAGCAGACTCGATTACAATGTTTGCCGCCGACGTCACGCATGTCACGTGGTTATTTGTACTTCAGTCTGGTTGGATTGTAGGCCTCCGCAAGGCTTCATGACTCACTCAACTGCT
--------------------------------CGCCCTGCAATTCAAGCAGACT 	11
--------------------------------CGCCCTGCAATTCAAGCAGAC 	1
----------------------------------------------------------------------------------------------------------TCAGTCTGGTTGGATTGTAGG 	1
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTC 	20937
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTCCGC 	1
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTCCG 	1
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCC 	31
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCT 	1491
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTCC 	24
---------------------------------------------------------------------------------------------------------------CTGGTTGGATTGTAGGCCT 	22
---------------------------------------------------------------------------------------------------------------CTGGTTGGATTGTAGGCCTC 	133
----------------------------------------------------------------------------------------------------------------TGGTTGGATTGTAGGCCTC 	75
----------------------------------------------------------------------------------------------------------------TGGTTGGATTGTAGGCCTCC 	1
-----------------------------------------------------------------------------------------------------------------GGTTGGATTGTAGGCCTCC 	1

Overlaps with: MNEST039581 MNEST051450
Overlaps with miRBase pre-miRNAs: ppt-MIR1024a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Physcomitrella patens GSM313217 TCTGGTTGGATTGTAGGCCTC CGCCTTGCAATTCAAGCAGACT down 2 1


Secondary structure

TTTCTGCCATGAGTTTTGTAGACGCCTTGCAATTCAAGCAGACTCTATTATGCGGCTGCCGCGGACACTACGTGGTTTGTTGTGCTTCAGTCTGGTTGGATTGTAGGCCTCCGCAAAACTTCATGACCAT
----------------------CGCCTTGCAATTCAAGCAGAC 	9
----------------------CGCCTTGCAATTCAAGCAGACT 	25
-----------------------GCCTTGCAATTCAAGCAGACT 	1
-----------------------GCCTTGCAATTCAAGCAGACTC 	1
-----------------------GCCTTGCAATTCAAGCAGAC 	1
------------------------CCTTGCAATTCAAGCAGACT 	1
--------------------------------------------------------------------------------------TCAGTCTGGTTGGATTGTAGG 	1
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTC 	10607
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCC 	38
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTCCG 	1
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTCC 	94
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTCCGC 	13
------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCT 	670
-------------------------------------------------------------------------------------------CTGGTTGGATTGTAGGCCTCC 	2
-------------------------------------------------------------------------------------------CTGGTTGGATTGTAGGCCT 	6
-------------------------------------------------------------------------------------------CTGGTTGGATTGTAGGCCTC 	69
--------------------------------------------------------------------------------------------TGGTTGGATTGTAGGCCTCCG 	5
--------------------------------------------------------------------------------------------TGGTTGGATTGTAGGCCTC 	39
--------------------------------------------------------------------------------------------TGGTTGGATTGTAGGCCTCC 	2
---------------------------------------------------------------------------------------------GGTTGGATTGTAGGCCTCCG 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
18 Physcomitrella patens GSM313217 TCTGGTTGGATTGTAGGCCTC CGCCCTGCAATTCAAGCAGACT down 2 1


Secondary structure

GACGAGATCGCGGCCGTCATGAGTTTTGTCGACGCCCTGCAATTCAAGCAGACTCGATTACAATGTTTGCCGCCGACGTCACGCATGTCACGTGGTTATTTGTACTTCAGTCTGGTTGGATTGTAGGCCTCCGCAAGGCTTCATGACTCACTCAACTGCT
--------------------------------CGCCCTGCAATTCAAGCAGACT 	7
--------------------------------CGCCCTGCAATTCAAGCAGAC 	1
--------------------------------CGCCCTGCAATTCAAGCAGACTC 	2
----------------------------------------------------------------------------------------------------------TCAGTCTGGTTGGATTGTAGG 	1
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTC 	10607
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCC 	38
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTCCG 	1
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTCC 	94
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCTCCGC 	13
--------------------------------------------------------------------------------------------------------------TCTGGTTGGATTGTAGGCCT 	670
---------------------------------------------------------------------------------------------------------------CTGGTTGGATTGTAGGCCTCC 	2
---------------------------------------------------------------------------------------------------------------CTGGTTGGATTGTAGGCCT 	6
---------------------------------------------------------------------------------------------------------------CTGGTTGGATTGTAGGCCTC 	69
----------------------------------------------------------------------------------------------------------------TGGTTGGATTGTAGGCCTCCG 	5
----------------------------------------------------------------------------------------------------------------TGGTTGGATTGTAGGCCTC 	39
----------------------------------------------------------------------------------------------------------------TGGTTGGATTGTAGGCCTCC 	2
-----------------------------------------------------------------------------------------------------------------GGTTGGATTGTAGGCCTCCG 	1

Overlaps with: MNEST039581 MNEST051450
Overlaps with miRBase pre-miRNAs: ppt-MIR1024a
HuntMi prediction: true miRNA