miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TCTGTGAGACCAAAGAACTACT

selected species: Homo sapiens



10 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Homo sapiens GSM651905 TCTGTGAGACCAAAGAACTACT TTGTTCTTTGGTCTTTCAGCCA down 6 0


Secondary structure

GCAAAGCAGCAATTGTTCTTTGGTCTTTCAGCCATGACCTGACCTTCTGTCTGTGAGACCAAAGAACTACTTTGCTTGGC
-------------------------------------------------TCTGTGAGACCAAAGAACTACT 	53
-------------------------------------------------TCTGTGAGACCAAAGAACTAC 	8
---------------------------------------------------TGTGAGACCAAAGAACTACT 	1

Overlaps with: MNEST029822 MNEST029823
Overlaps with miRBase pre-miRNAs: hsa-mir-4677
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Homo sapiens GSM531974 TCTGTGAGACCAAAGAACTACT TTGTTCTTTGGTCTTTCAGCCA down 6 0


Secondary structure

GCAAAGCAGCAATTGTTCTTTGGTCTTTCAGCCATGACCTGACCTTCTGTCTGTGAGACCAAAGAACTACTTTGCTTGGC
-------------------------------------------------TCTGTGAGACCAAAGAACTACT 	12
-------------------------------------------------TCTGTGAGACCAAAGAACTA 	1

Overlaps with: MNEST029822 MNEST029823
Overlaps with miRBase pre-miRNAs: hsa-mir-4677
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Homo sapiens GSM494809_Normal_1 TCTGTGAGACCAAAGAACTACT TTGTTCTTTGGTCTTTCAGCCA down 6 0


Secondary structure

GCAAAGCAGCAATTGTTCTTTGGTCTTTCAGCCATGACCTGACCTTCTGTCTGTGAGACCAAAGAACTACTTTGCTTGGC
----------------------------------------------CTGTCTGTGAGACCAAAGAACT 	1
-------------------------------------------------TCTGTGAGACCAAAGAACTACT 	58
-------------------------------------------------TCTGTGAGACCAAAGAACTAC 	5
-------------------------------------------------TCTGTGAGACCAAAGAACTACTTT 	1
-------------------------------------------------TCTGTGAGACCAAAGAACTACTT 	1
---------------------------------------------------TGTGAGACCAAAGAACTACT 	1

Overlaps with: MNEST029822 MNEST029823
Overlaps with miRBase pre-miRNAs: hsa-mir-4677
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Homo sapiens GSM651908 TCTGTGAGACCAAAGAACTACT TTGTTCTTTGGTCTTTCAGCCA down 6 0


Secondary structure

GCAAAGCAGCAATTGTTCTTTGGTCTTTCAGCCATGACCTGACCTTCTGTCTGTGAGACCAAAGAACTACTTTGCTTGGC
-------------------------------------------------TCTGTGAGACCAAAGAACTACT 	39
-------------------------------------------------TCTGTGAGACCAAAGAACTAC 	10
-------------------------------------------------TCTGTGAGACCAAAGAACTACTT 	3
-------------------------------------------------TCTGTGAGACCAAAGAACT 	1

Overlaps with: MNEST029822 MNEST029823
Overlaps with miRBase pre-miRNAs: hsa-mir-4677
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Homo sapiens GSM651906 TCTGTGAGACCAAAGAACTACT TTGTTCTTTGGTCTTTCAGCCA down 6 0


Secondary structure

GCAAAGCAGCAATTGTTCTTTGGTCTTTCAGCCATGACCTGACCTTCTGTCTGTGAGACCAAAGAACTACTTTGCTTGGC
-------------------------------------------------TCTGTGAGACCAAAGAACTACT 	35
-------------------------------------------------TCTGTGAGACCAAAGAACTACTT 	4
-------------------------------------------------TCTGTGAGACCAAAGAACTAC 	4
-------------------------------------------------TCTGTGAGACCAAAGAACTA 	2

Overlaps with: MNEST029822 MNEST029823
Overlaps with miRBase pre-miRNAs: hsa-mir-4677
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Homo sapiens GSM531982 TCTGTGAGACCAAAGAACTACT TTGTTCTTTGGTCTTTCAGCCA down 6 0


Secondary structure

GCAAAGCAGCAATTGTTCTTTGGTCTTTCAGCCATGACCTGACCTTCTGTCTGTGAGACCAAAGAACTACTTTGCTTGGC
-------------------------------------------------TCTGTGAGACCAAAGAACTACT 	17
-------------------------------------------------TCTGTGAGACCAAAGAACTACTT 	3
-------------------------------------------------TCTGTGAGACCAAAGAACTAC 	1

Overlaps with: MNEST029822 MNEST029823
Overlaps with miRBase pre-miRNAs: hsa-mir-4677
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Homo sapiens GSM531978 TCTGTGAGACCAAAGAACTACT TTGTTCTTTGGTCTTTCAGCCA down 6 0


Secondary structure

GCAAAGCAGCAATTGTTCTTTGGTCTTTCAGCCATGACCTGACCTTCTGTCTGTGAGACCAAAGAACTACTTTGCTTGGC
-------------------------------------------------TCTGTGAGACCAAAGAACTACT 	44
-------------------------------------------------TCTGTGAGACCAAAGAACTAC 	12
-------------------------------------------------TCTGTGAGACCAAAGAACTA 	3
-------------------------------------------------TCTGTGAGACCAAAGAACT 	4
-------------------------------------------------TCTGTGAGACCAAAGAACTACTT 	1

Overlaps with: MNEST029822 MNEST029823
Overlaps with miRBase pre-miRNAs: hsa-mir-4677
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Homo sapiens GSM651907 TCTGTGAGACCAAAGAACTACT TTGTTCTTTGGTCTTTCAGCCA down 6 0


Secondary structure

GCAAAGCAGCAATTGTTCTTTGGTCTTTCAGCCATGACCTGACCTTCTGTCTGTGAGACCAAAGAACTACTTTGCTTGGC
-------------------------------------------------TCTGTGAGACCAAAGAACTACT 	32
-------------------------------------------------TCTGTGAGACCAAAGAACTAC 	6
-------------------------------------------------TCTGTGAGACCAAAGAACT 	5
-------------------------------------------------TCTGTGAGACCAAAGAACTACTT 	3

Overlaps with: MNEST029822 MNEST029823
Overlaps with miRBase pre-miRNAs: hsa-mir-4677
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Homo sapiens GSM531986-13294 TCTGTGAGACCAAAGAACTACT TTGTTCTTTGGTCTTTCAGCCA down 6 0


Secondary structure

GCAAAGCAGCAATTGTTCTTTGGTCTTTCAGCCATGACCTGACCTTCTGTCTGTGAGACCAAAGAACTACTTTGCTTGGC
-------------------------------------------------TCTGTGAGACCAAAGAACTACT 	12
-------------------------------------------------TCTGTGAGACCAAAGAACT 	2
-------------------------------------------------TCTGTGAGACCAAAGAACTAC 	1
-------------------------------------------------TCTGTGAGACCAAAGAACTACTT 	1

Overlaps with: MNEST029822 MNEST029823
Overlaps with miRBase pre-miRNAs: hsa-mir-4677
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Homo sapiens GSM531975 TCTGTGAGACCAAAGAACTACT TTGTTCTTTGGTCTTTCAGCCA down 6 0


Secondary structure

GCAAAGCAGCAATTGTTCTTTGGTCTTTCAGCCATGACCTGACCTTCTGTCTGTGAGACCAAAGAACTACTTTGCTTGGC
-------------------------------------------------TCTGTGAGACCAAAGAACTACT 	51
-------------------------------------------------TCTGTGAGACCAAAGAACTA 	6
-------------------------------------------------TCTGTGAGACCAAAGAACTAC 	5
-------------------------------------------------TCTGTGAGACCAAAGAACT 	2

Overlaps with: MNEST029822 MNEST029823
Overlaps with miRBase pre-miRNAs: hsa-mir-4677
HuntMi prediction: true miRNA