miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCTTAGATCTACAATGCCACC

selected species: Physcomitrella patens



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM115097 TCTTAGATCTACAATGCCACC CGGCATTGTGGACCTAAGACC up 2 0


Secondary structure

CAAATCCATTCTTGGACTAGTTCTTAGATCTACAATGCCACCTACAACAGCAATACTTAAGGTTATGAGAAGATATCTATCATGCTCTCTGGAGTGTGGTCCTCTTCTTACAATCTTAAATTTTAAATTTCTTGAAAGGCGGCATTGTGGACCTAAGACCTTGGTCAAGTGTGGAATA
---------------------TCTTAGATCTACAATGCCACC 	7
-------------------------------------------------------------------------------------------------------------------------------------------CGGCATTGTGGACCTAAGACC 	5
-------------------------------------------------------------------------------------------------------------------------------------------CGGCATTGTGGACCTAAGAC 	1

Overlaps with: MNEST039590 MNEST039591
Overlaps with miRBase pre-miRNAs: ppt-MIR1028b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM115095 TCTTAGATCTACAATGCCACC CGGCATTGTGGACCTAAGACC up 2 0


Secondary structure

CAAATCCATTCTTGGACTAGTTCTTAGATCTACAATGCCACCTACAACAGCAATACTTAAGGTTATGAGAAGATATCTATCATGCTCTCTGGAGTGTGGTCCTCTTCTTACAATCTTAAATTTTAAATTTCTTGAAAGGCGGCATTGTGGACCTAAGACCTTGGTCAAGTGTGGAATA
---------------------TCTTAGATCTACAATGCCACCT 	1
---------------------TCTTAGATCTACAATGCCACC 	163
---------------------TCTTAGATCTACAATGCCAC 	48
---------------------TCTTAGATCTACAATGCCA 	2
----------------------CTTAGATCTACAATGCCACC 	1
-----------------------TTAGATCTACAATGCCACC 	1
-------------------------------------------------------------------------------------------------------------------------------------------CGGCATTGTGGACCTAAGACC 	81
-------------------------------------------------------------------------------------------------------------------------------------------CGGCATTGTGGACCTAAGAC 	1

Overlaps with: MNEST039590 MNEST039591
Overlaps with miRBase pre-miRNAs: ppt-MIR1028b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM115096 TCTTAGATCTACAATGCCACC CGGCATTGTGGACCTAAGACC up 2 0


Secondary structure

CAAATCCATTCTTGGACTAGTTCTTAGATCTACAATGCCACCTACAACAGCAATACTTAAGGTTATGAGAAGATATCTATCATGCTCTCTGGAGTGTGGTCCTCTTCTTACAATCTTAAATTTTAAATTTCTTGAAAGGCGGCATTGTGGACCTAAGACCTTGGTCAAGTGTGGAATA
--------------------TTCTTAGATCTACAATGCCACC 	1
---------------------TCTTAGATCTACAATGCCACCT 	1
---------------------TCTTAGATCTACAATGCCACC 	110
---------------------TCTTAGATCTACAATGCCAC 	55
----------------------CTTAGATCTACAATGCCAC 	1
----------------------CTTAGATCTACAATGCCACC 	2
-------------------------------------------------------------------------------------------------------------------------------------------CGGCATTGTGGACCTAAGACC 	87
-------------------------------------------------------------------------------------------------------------------------------------------CGGCATTGTGGACCTAAGAC 	1

Overlaps with: MNEST039590 MNEST039591
Overlaps with miRBase pre-miRNAs: ppt-MIR1028b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Physcomitrella patens GSM313216 TCTTAGATCTACAATGCCACC CGGCATTGTGGACCTAAGACC up 2 0


Secondary structure

CAAATCCATTCTTGGACTAGTTCTTAGATCTACAATGCCACCTACAACAGCAATACTTAAGGTTATGAGAAGATATCTATCATGCTCTCTGGAGTGTGGTCCTCTTCTTACAATCTTAAATTTTAAATTTCTTGAAAGGCGGCATTGTGGACCTAAGACCTTGGTCAAGTGTGGAATA
------------TGGACTAGTTCTTAGATCTAC 	1
---------------------TCTTAGATCTACAATGCCAC 	17
---------------------TCTTAGATCTACAATGCCACC 	199
----------------------CTTAGATCTACAATGCCACC 	2
-------------------------------------------------------------------------------------------------------------------------------------------CGGCATTGTGGACCTAAGAC 	10
-------------------------------------------------------------------------------------------------------------------------------------------CGGCATTGTGGACCTAAGACC 	83
---------------------------------------------------------------------------------------------------------------------------------------------------TGGACCTAAGACCTTGGTCAAG 	2

Overlaps with: MNEST039590 MNEST039591
Overlaps with miRBase pre-miRNAs: ppt-MIR1028b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Physcomitrella patens GSM313217 TCTTAGATCTACAATGCCACC CGGCATTGTGGACCTAAGACC up 2 0


Secondary structure

CAAATCCATTCTTGGACTAGTTCTTAGATCTACAATGCCACCTACAACAGCAATACTTAAGGTTATGAGAAGATATCTATCATGCTCTCTGGAGTGTGGTCCTCTTCTTACAATCTTAAATTTTAAATTTCTTGAAAGGCGGCATTGTGGACCTAAGACCTTGGTCAAGTGTGGAATA
------------TGGACTAGTTCTTAGATCTACA 	1
---------------------TCTTAGATCTACAATGCCACC 	179
---------------------TCTTAGATCTACAATGCCACCT 	1
---------------------TCTTAGATCTACAATGCCAC 	12
---------------------TCTTAGATCTACAATGCCA 	1
----------------------CTTAGATCTACAATGCCACC 	3
-----------------------TTAGATCTACAATGCCACC 	1
-------------------------------------------------------------------------------------------------------------------------------------------CGGCATTGTGGACCTAAGA 	1
-------------------------------------------------------------------------------------------------------------------------------------------CGGCATTGTGGACCTAAGAC 	7
-------------------------------------------------------------------------------------------------------------------------------------------CGGCATTGTGGACCTAAGACC 	72
--------------------------------------------------------------------------------------------------------------------------------------------GGCATTGTGGACCTAAGACC 	3

Overlaps with: MNEST039590 MNEST039591
Overlaps with miRBase pre-miRNAs: ppt-MIR1028b
HuntMi prediction: true miRNA