miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCTTAGATCTACAATGTCACA

selected species: Physcomitrella patens



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM115097 TCTTAGATCTACAATGTCACA TGACATTGTAGATCTACGTGC up 4 0


Secondary structure

TACCTTCACATCTGTTCCAGCTCTTAGATCTACAATGTCACATGAACACATACTTGGTAACGAATCTGGCAGTAAGACTTCATTTATATGGGTCCATTCCGCTCCAAGCTTTCACATCTGTGACAGATTTAGCAATATAGTGAAAATCTGACCGTTGGTGATGCAACTGAAGCAAGTTTTCACGTGACATTGTAGATCTACGTGCCGGATTAGTGGTGAAAGC
--------------TTCCAGCTCTTAGATCTACA 	1
------------------AGCTCTTAGATCTACAATGTC 	2
---------------------TCTTAGATCTACAATGTCACA 	353
---------------------TCTTAGATCTACAATGTCA 	1
----------------------CTTAGATCTACAATGTCACAT 	1
----------------------CTTAGATCTACAATGTCACA 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGACATTGTAGATCTACGTGC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGACATTGTAGATCTACGTG 	3
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGACATTGTAGATCTACGTGCC 	4
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGACATTGTAGATCTACGTGC 	180
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATTGTAGATCTACGTGC 	1


Overlaps with: MNEST039588 MNEST039589
Overlaps with miRBase pre-miRNAs: ppt-MIR1028a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM115095 TCTTAGATCTACAATGTCACA TGACATTGTAGATCTACGTGC up 4 0


Secondary structure

TACCTTCACATCTGTTCCAGCTCTTAGATCTACAATGTCACATGAACACATACTTGGTAACGAATCTGGCAGTAAGACTTCATTTATATGGGTCCATTCCGCTCCAAGCTTTCACATCTGTGACAGATTTAGCAATATAGTGAAAATCTGACCGTTGGTGATGCAACTGAAGCAAGTTTTCACGTGACATTGTAGATCTACGTGCCGGATTAGTGGTGAAAGC
---------------------TCTTAGATCTACAATGTCACA 	8


Overlaps with: MNEST039588 MNEST039589
Overlaps with miRBase pre-miRNAs: ppt-MIR1028a
HuntMi prediction: true miRNA