miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCTTGTCAATGTTTAGGGGCA

selected species: Physcomitrella patens



18 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM115097 TCTTGTCAATGTTTAGGGGCA CCCCTAAATGTTGGCAAGACC up 2 0


Secondary structure

TATTTTGTGATGCTAATACGGTCTTGTCAATGTTTAGGGGCAAAGGTGCAACTATGCAACATCCCTGGTGCGAGCTCTTGATCGCGTAAGTGTTGCTAGTGCCCTCCACCCCTAAATGTTGGCAAGACCTAATTGGCGCACAACATT
---------------------TCTTGTCAATGTTTAGGGGC 	70
---------------------TCTTGTCAATGTTTAGGGGCAA 	9
---------------------TCTTGTCAATGTTTAGGGGCA 	1234
----------------------CTTGTCAATGTTTAGGGGCA 	71
-----------------------TTGTCAATGTTTAGGGGCAA 	1
-----------------------TTGTCAATGTTTAGGGGCA 	1
-----------------------------------------------------------------------------------------GTGTTGCTAGTGCCCTCCA 	1
-----------------------------------------------------------------------------------------------------------ACCCCTAAATGTTGGCAAGAC 	2
------------------------------------------------------------------------------------------------------------CCCCTAAATGTTGGCAAGACC 	286
------------------------------------------------------------------------------------------------------------CCCCTAAATGTTGGCAAGAC 	14
------------------------------------------------------------------------------------------------------------CCCCTAAATGTTGGCAAGA 	1
-------------------------------------------------------------------------------------------------------------CCCTAAATGTTGGCAAGACC 	26
-------------------------------------------------------------------------------------------------------------CCCTAAATGTTGGCAAGAC 	8


Overlaps with: MNEST039571 MNEST051449
Overlaps with miRBase pre-miRNAs: ppt-MIR904b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM115097 TCTTGTCAATGTTTAGGGGCA CCCCTAAATCTTGGCAAGACC up 3 0


Secondary structure

ATATTTGTGATGCTAATATGGTCTTGTCAATGTTTAGGGGCAAAGGCCTGATTATGCAGATGCTTGGTGTAAGCTTATGCTTGTACAACTTTTGCTATTGGCCTCCACCCCTAAATCTTGGCAAGACCTAATTAGCCCACAACATT
------------------TGGTCTTGTCAATGTTTAGGG 	40
------------------TGGTCTTGTCAATGTTTAGGGGCA 	2
------------------TGGTCTTGTCAATGTTTAGG 	3
---------------------TCTTGTCAATGTTTAGGGGC 	70
---------------------TCTTGTCAATGTTTAGGGGCAA 	9
---------------------TCTTGTCAATGTTTAGGGGCA 	1234
----------------------CTTGTCAATGTTTAGGGGCA 	71
-----------------------TTGTCAATGTTTAGGGGCAA 	1
-----------------------TTGTCAATGTTTAGGGGCA 	1
--------------------------------------------------------------------------------------------------------CCACCCCTAAATCTTGGCAAGACC 	2
--------------------------------------------------------------------------------------------------------CCACCCCTAAATCTTGGCAAGAC 	2
---------------------------------------------------------------------------------------------------------CACCCCTAAATCTTGGCAAGACC 	1
----------------------------------------------------------------------------------------------------------ACCCCTAAATCTTGGCAAGAC 	5
-----------------------------------------------------------------------------------------------------------CCCCTAAATCTTGGCAAGACC 	692
-----------------------------------------------------------------------------------------------------------CCCCTAAATCTTGGCAAGAC 	47
-----------------------------------------------------------------------------------------------------------CCCCTAAATCTTGGCAAGA 	1
------------------------------------------------------------------------------------------------------------CCCTAAATCTTGGCAAGACC 	132
------------------------------------------------------------------------------------------------------------CCCTAAATCTTGGCAAGAC 	28
-------------------------------------------------------------------------------------------------------------CCTAAATCTTGGCAAGACC 	1
--------------------------------------------------------------------------------------------------------------CTAAATCTTGGCAAGACCTAA 	2
--------------------------------------------------------------------------------------------------------------CTAAATCTTGGCAAGACCTA 	2
---------------------------------------------------------------------------------------------------------------TAAATCTTGGCAAGACCTAAT 	1
-------------------------------------------------------------------------------------------------------------------TCTTGGCAAGACCTAATTAGC 	1


Overlaps with: MNEST039570 MNEST051448
Overlaps with miRBase pre-miRNAs: ppt-MIR904a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM313212 TCTTGTCAATGTTTAGGGGCA CCCCTAAATGTTGGCAAGACC up 2 0


Secondary structure

TATTTTGTGATGCTAATACGGTCTTGTCAATGTTTAGGGGCAAAGGTGCAACTATGCAACATCCCTGGTGCGAGCTCTTGATCGCGTAAGTGTTGCTAGTGCCCTCCACCCCTAAATGTTGGCAAGACCTAATTGGCGCACAACATT
---------------------TCTTGTCAATGTTTAGGGGCAA 	442
---------------------TCTTGTCAATGTTTAGGGGCAAAG 	9
---------------------TCTTGTCAATGTTTAGGGG 	7
---------------------TCTTGTCAATGTTTAGGGGCAAA 	9
---------------------TCTTGTCAATGTTTAGGGGC 	10
---------------------TCTTGTCAATGTTTAGGGGCA 	6743
----------------------CTTGTCAATGTTTAGGGGCAA 	121
----------------------CTTGTCAATGTTTAGGGGC 	6
----------------------CTTGTCAATGTTTAGGGGCAAAG 	4
----------------------CTTGTCAATGTTTAGGGGCA 	2602
----------------------CTTGTCAATGTTTAGGGGCAAA 	1
-----------------------TTGTCAATGTTTAGGGGCAA 	28
-----------------------TTGTCAATGTTTAGGGGCA 	75
------------------------TGTCAATGTTTAGGGGCAA 	2
--------------------------------------------GGTGCAACTATGCAACATCCCTGG 	1
---------------------------------------------------------------------------------------------------------CCACCCCTAAATGTTGGCAAG 	1
-----------------------------------------------------------------------------------------------------------ACCCCTAAATGTTGGCAAGAC 	9
-----------------------------------------------------------------------------------------------------------ACCCCTAAATGTTGGCAAGA 	2
-----------------------------------------------------------------------------------------------------------ACCCCTAAATGTTGGCAAGACC 	1
------------------------------------------------------------------------------------------------------------CCCCTAAATGTTGGCAAGAC 	11
------------------------------------------------------------------------------------------------------------CCCCTAAATGTTGGCAAGACC 	163
------------------------------------------------------------------------------------------------------------CCCCTAAATGTTGGCAAGA 	3
-------------------------------------------------------------------------------------------------------------CCCTAAATGTTGGCAAGACC 	9
-------------------------------------------------------------------------------------------------------------CCCTAAATGTTGGCAAGAC 	1
--------------------------------------------------------------------------------------------------------------CCTAAATGTTGGCAAGACC 	1
--------------------------------------------------------------------------------------------------------------CCTAAATGTTGGCAAGACCTA 	1
---------------------------------------------------------------------------------------------------------------CTAAATGTTGGCAAGACCTAA 	1


Overlaps with: MNEST039571 MNEST051449
Overlaps with miRBase pre-miRNAs: ppt-MIR904b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Physcomitrella patens GSM313212 TCTTGTCAATGTTTAGGGGCA CCCCTAAATCTTGGCAAGACC up 3 0


Secondary structure

ATATTTGTGATGCTAATATGGTCTTGTCAATGTTTAGGGGCAAAGGCCTGATTATGCAGATGCTTGGTGTAAGCTTATGCTTGTACAACTTTTGCTATTGGCCTCCACCCCTAAATCTTGGCAAGACCTAATTAGCCCACAACATT
------------------TGGTCTTGTCAATGTTTAGGG 	1
------------------TGGTCTTGTCAATGTTTAGG 	1
---------------------TCTTGTCAATGTTTAGGGGCAA 	442
---------------------TCTTGTCAATGTTTAGGGGCAAAG 	9
---------------------TCTTGTCAATGTTTAGGGG 	7
---------------------TCTTGTCAATGTTTAGGGGCAAA 	9
---------------------TCTTGTCAATGTTTAGGGGC 	10
---------------------TCTTGTCAATGTTTAGGGGCA 	6743
----------------------CTTGTCAATGTTTAGGGGCAA 	121
----------------------CTTGTCAATGTTTAGGGGC 	6
----------------------CTTGTCAATGTTTAGGGGCAAAG 	4
----------------------CTTGTCAATGTTTAGGGGCA 	2602
----------------------CTTGTCAATGTTTAGGGGCAAA 	1
-----------------------TTGTCAATGTTTAGGGGCAA 	28
-----------------------TTGTCAATGTTTAGGGGCA 	75
------------------------TGTCAATGTTTAGGGGCAA 	2
--------------------------------------------------------------------------------------------------------CCACCCCTAAATCTTGGCAAG 	1
----------------------------------------------------------------------------------------------------------ACCCCTAAATCTTGGCAAGAC 	1
-----------------------------------------------------------------------------------------------------------CCCCTAAATCTTGGCAAGACC 	127
-----------------------------------------------------------------------------------------------------------CCCCTAAATCTTGGCAAGAC 	8
-----------------------------------------------------------------------------------------------------------CCCCTAAATCTTGGCAAGA 	3
------------------------------------------------------------------------------------------------------------CCCTAAATCTTGGCAAGACC 	13
------------------------------------------------------------------------------------------------------------CCCTAAATCTTGGCAAGAC 	1
--------------------------------------------------------------------------------------------------------------CTAAATCTTGGCAAGACCTAA 	2


Overlaps with: MNEST039570 MNEST051448
Overlaps with miRBase pre-miRNAs: ppt-MIR904a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Physcomitrella patens GSM115095 TCTTGTCAATGTTTAGGGGCA CCCCTAAATGTTGGCAAGACC up 2 0


Secondary structure

TATTTTGTGATGCTAATACGGTCTTGTCAATGTTTAGGGGCAAAGGTGCAACTATGCAACATCCCTGGTGCGAGCTCTTGATCGCGTAAGTGTTGCTAGTGCCCTCCACCCCTAAATGTTGGCAAGACCTAATTGGCGCACAACATT
---------------------TCTTGTCAATGTTTAGGGGC 	7
---------------------TCTTGTCAATGTTTAGGGGCAA 	5
---------------------TCTTGTCAATGTTTAGGGGCA 	163
----------------------CTTGTCAATGTTTAGGGGCA 	12
----------------------CTTGTCAATGTTTAGGGGCAA 	2
-----------------------TTGTCAATGTTTAGGGGCA 	1
-----------------------------------------------------------------------------------------------------------ACCCCTAAATGTTGGCAAGAC 	1
------------------------------------------------------------------------------------------------------------CCCCTAAATGTTGGCAAGACC 	54
-------------------------------------------------------------------------------------------------------------CCCTAAATGTTGGCAAGACC 	17
-------------------------------------------------------------------------------------------------------------CCCTAAATGTTGGCAAGAC 	5
--------------------------------------------------------------------------------------------------------------CCTAAATGTTGGCAAGACC 	1
---------------------------------------------------------------------------------------------------------------CTAAATGTTGGCAAGACCTAA 	2


Overlaps with: MNEST039571 MNEST051449
Overlaps with miRBase pre-miRNAs: ppt-MIR904b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Physcomitrella patens GSM115095 TCTTGTCAATGTTTAGGGGCA CCCCTAAATCTTGGCAAGACC up 3 0


Secondary structure

ATATTTGTGATGCTAATATGGTCTTGTCAATGTTTAGGGGCAAAGGCCTGATTATGCAGATGCTTGGTGTAAGCTTATGCTTGTACAACTTTTGCTATTGGCCTCCACCCCTAAATCTTGGCAAGACCTAATTAGCCCACAACATT
------------------TGGTCTTGTCAATGTTTAGGG 	25
------------------TGGTCTTGTCAATGTTTAGG 	1
---------------------TCTTGTCAATGTTTAGGGGC 	7
---------------------TCTTGTCAATGTTTAGGGGCAA 	5
---------------------TCTTGTCAATGTTTAGGGGCA 	163
----------------------CTTGTCAATGTTTAGGGGCA 	12
----------------------CTTGTCAATGTTTAGGGGCAA 	2
-----------------------TTGTCAATGTTTAGGGGCA 	1
--------------------------------------------------------------------------------------------------------CCACCCCTAAATCTTGGCAAGACC 	1
-----------------------------------------------------------------------------------------------------------CCCCTAAATCTTGGCAAGACC 	82
-----------------------------------------------------------------------------------------------------------CCCCTAAATCTTGGCAAGA 	1
------------------------------------------------------------------------------------------------------------CCCTAAATCTTGGCAAGACC 	34
------------------------------------------------------------------------------------------------------------CCCTAAATCTTGGCAAGAC 	2
--------------------------------------------------------------------------------------------------------------CTAAATCTTGGCAAGACCTAA 	3
---------------------------------------------------------------------------------------------------------------TAAATCTTGGCAAGACCTAA 	1


Overlaps with: MNEST039570 MNEST051448
Overlaps with miRBase pre-miRNAs: ppt-MIR904a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Physcomitrella patens GSM313213 TCTTGTCAATGTTTAGGGGCA CCCCTAAATGTTGGCAAGACC up 2 0


Secondary structure

TATTTTGTGATGCTAATACGGTCTTGTCAATGTTTAGGGGCAAAGGTGCAACTATGCAACATCCCTGGTGCGAGCTCTTGATCGCGTAAGTGTTGCTAGTGCCCTCCACCCCTAAATGTTGGCAAGACCTAATTGGCGCACAACATT
--------------------GTCTTGTCAATGTTTAGGGGCA 	1
---------------------TCTTGTCAATGTTTAGGGGCAAAG 	11
---------------------TCTTGTCAATGTTTAGGGGCAA 	433
---------------------TCTTGTCAATGTTTAGGGG 	9
---------------------TCTTGTCAATGTTTAGGGGCAAA 	8
---------------------TCTTGTCAATGTTTAGGGGC 	16
---------------------TCTTGTCAATGTTTAGGGGCA 	7094
----------------------CTTGTCAATGTTTAGGGGCAA 	110
----------------------CTTGTCAATGTTTAGGGGCAAAG 	4
----------------------CTTGTCAATGTTTAGGGGC 	8
----------------------CTTGTCAATGTTTAGGGGCAAA 	3
----------------------CTTGTCAATGTTTAGGGGCA 	2635
-----------------------TTGTCAATGTTTAGGGGCA 	80
-----------------------TTGTCAATGTTTAGGGGCAAAG 	1
-----------------------TTGTCAATGTTTAGGGGCAA 	36
---------------------------------------------------------------------------------------------------------CCACCCCTAAATGTTGGCAAGA 	1
-----------------------------------------------------------------------------------------------------------ACCCCTAAATGTTGGCAAGA 	2
-----------------------------------------------------------------------------------------------------------ACCCCTAAATGTTGGCAAGAC 	8
------------------------------------------------------------------------------------------------------------CCCCTAAATGTTGGCAAGAC 	16
------------------------------------------------------------------------------------------------------------CCCCTAAATGTTGGCAAGACC 	181
------------------------------------------------------------------------------------------------------------CCCCTAAATGTTGGCAAGA 	4
-------------------------------------------------------------------------------------------------------------CCCTAAATGTTGGCAAGACC 	9
-------------------------------------------------------------------------------------------------------------CCCTAAATGTTGGCAAGAC 	1
--------------------------------------------------------------------------------------------------------------CCTAAATGTTGGCAAGACCTA 	1
---------------------------------------------------------------------------------------------------------------CTAAATGTTGGCAAGACCTAA 	1


Overlaps with: MNEST039571 MNEST051449
Overlaps with miRBase pre-miRNAs: ppt-MIR904b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Physcomitrella patens GSM313213 TCTTGTCAATGTTTAGGGGCA CCCCTAAATCTTGGCAAGACC up 3 0


Secondary structure

ATATTTGTGATGCTAATATGGTCTTGTCAATGTTTAGGGGCAAAGGCCTGATTATGCAGATGCTTGGTGTAAGCTTATGCTTGTACAACTTTTGCTATTGGCCTCCACCCCTAAATCTTGGCAAGACCTAATTAGCCCACAACATT
--------------AATATGGTCTTGTCAATGTTT 	1
------------------TGGTCTTGTCAATGTTTAGGG 	5
--------------------GTCTTGTCAATGTTTAGGGGCA 	1
---------------------TCTTGTCAATGTTTAGGGGCAAAG 	11
---------------------TCTTGTCAATGTTTAGGGGCAA 	433
---------------------TCTTGTCAATGTTTAGGGG 	9
---------------------TCTTGTCAATGTTTAGGGGCAAA 	8
---------------------TCTTGTCAATGTTTAGGGGC 	16
---------------------TCTTGTCAATGTTTAGGGGCA 	7094
----------------------CTTGTCAATGTTTAGGGGCAA 	110
----------------------CTTGTCAATGTTTAGGGGCAAAG 	4
----------------------CTTGTCAATGTTTAGGGGC 	8
----------------------CTTGTCAATGTTTAGGGGCAAA 	3
----------------------CTTGTCAATGTTTAGGGGCA 	2635
-----------------------TTGTCAATGTTTAGGGGCA 	80
-----------------------TTGTCAATGTTTAGGGGCAAAG 	1
-----------------------TTGTCAATGTTTAGGGGCAA 	36
-----------------------------------------------------------------------------------------------------------CCCCTAAATCTTGGCAAGACC 	149
-----------------------------------------------------------------------------------------------------------CCCCTAAATCTTGGCAAGAC 	10
------------------------------------------------------------------------------------------------------------CCCTAAATCTTGGCAAGACC 	11
------------------------------------------------------------------------------------------------------------CCCTAAATCTTGGCAAGAC 	2
--------------------------------------------------------------------------------------------------------------CTAAATCTTGGCAAGACCTAA 	3
---------------------------------------------------------------------------------------------------------------TAAATCTTGGCAAGACCTAA 	1


Overlaps with: MNEST039570 MNEST051448
Overlaps with miRBase pre-miRNAs: ppt-MIR904a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Physcomitrella patens GSM313215 TCTTGTCAATGTTTAGGGGCA CCCCTAAATGTTGGCAAGACC up 2 0


Secondary structure

TATTTTGTGATGCTAATACGGTCTTGTCAATGTTTAGGGGCAAAGGTGCAACTATGCAACATCCCTGGTGCGAGCTCTTGATCGCGTAAGTGTTGCTAGTGCCCTCCACCCCTAAATGTTGGCAAGACCTAATTGGCGCACAACATT
---------------------TCTTGTCAATGTTTAGGGG 	83
---------------------TCTTGTCAATGTTTAGGGGCAA 	97
---------------------TCTTGTCAATGTTTAGGGGC 	35
---------------------TCTTGTCAATGTTTAGGGGCAAA 	1
---------------------TCTTGTCAATGTTTAGGGGCA 	2348
----------------------CTTGTCAATGTTTAGGGGCAA 	86
----------------------CTTGTCAATGTTTAGGGGC 	7
----------------------CTTGTCAATGTTTAGGGGCA 	1339
----------------------CTTGTCAATGTTTAGGGGCAAA 	1
-----------------------TTGTCAATGTTTAGGGGCAAA 	2
-----------------------TTGTCAATGTTTAGGGGCA 	25
-----------------------TTGTCAATGTTTAGGGGCAA 	5
------------------------TGTCAATGTTTAGGGGCAA 	1
------------------------------------------AAGGTGCAACTATGCAACATCCCTGG 	1
-----------------------------------------------------------------------------------------------------------ACCCCTAAATGTTGGCAAG 	2
-----------------------------------------------------------------------------------------------------------ACCCCTAAATGTTGGCAAGACC 	2
-----------------------------------------------------------------------------------------------------------ACCCCTAAATGTTGGCAAGAC 	22
------------------------------------------------------------------------------------------------------------CCCCTAAATGTTGGCAAGAC 	22
------------------------------------------------------------------------------------------------------------CCCCTAAATGTTGGCAAGACC 	594
------------------------------------------------------------------------------------------------------------CCCCTAAATGTTGGCAAGACCT 	1
------------------------------------------------------------------------------------------------------------CCCCTAAATGTTGGCAAGA 	5
-------------------------------------------------------------------------------------------------------------CCCTAAATGTTGGCAAGACC 	19
--------------------------------------------------------------------------------------------------------------CCTAAATGTTGGCAAGACC 	1
---------------------------------------------------------------------------------------------------------------CTAAATGTTGGCAAGACCTAA 	1
----------------------------------------------------------------------------------------------------------------TAAATGTTGGCAAGACCTAAT 	1


Overlaps with: MNEST039571 MNEST051449
Overlaps with miRBase pre-miRNAs: ppt-MIR904b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Physcomitrella patens GSM313215 TCTTGTCAATGTTTAGGGGCA CCCCTAAATCTTGGCAAGACC up 3 0


Secondary structure

ATATTTGTGATGCTAATATGGTCTTGTCAATGTTTAGGGGCAAAGGCCTGATTATGCAGATGCTTGGTGTAAGCTTATGCTTGTACAACTTTTGCTATTGGCCTCCACCCCTAAATCTTGGCAAGACCTAATTAGCCCACAACATT
------------------TGGTCTTGTCAATGTTTAGGG 	2
---------------------TCTTGTCAATGTTTAGGGG 	83
---------------------TCTTGTCAATGTTTAGGGGCAA 	97
---------------------TCTTGTCAATGTTTAGGGGC 	35
---------------------TCTTGTCAATGTTTAGGGGCAAA 	1
---------------------TCTTGTCAATGTTTAGGGGCA 	2348
----------------------CTTGTCAATGTTTAGGGGCAA 	86
----------------------CTTGTCAATGTTTAGGGGC 	7
----------------------CTTGTCAATGTTTAGGGGCA 	1339
----------------------CTTGTCAATGTTTAGGGGCAAA 	1
-----------------------TTGTCAATGTTTAGGGGCAAA 	2
-----------------------TTGTCAATGTTTAGGGGCA 	25
-----------------------TTGTCAATGTTTAGGGGCAA 	5
------------------------TGTCAATGTTTAGGGGCAA 	1
----------------------------------TAGGGGCAAAGGCCTGATTATGC 	1
--------------------------------------------------------------------------------------------------------CCACCCCTAAATCTTGGCAAG 	2
----------------------------------------------------------------------------------------------------------ACCCCTAAATCTTGGCAAGACC 	3
----------------------------------------------------------------------------------------------------------ACCCCTAAATCTTGGCAAGAC 	3
-----------------------------------------------------------------------------------------------------------CCCCTAAATCTTGGCAAGACCT 	1
-----------------------------------------------------------------------------------------------------------CCCCTAAATCTTGGCAAGACC 	585
-----------------------------------------------------------------------------------------------------------CCCCTAAATCTTGGCAAGAC 	12
-----------------------------------------------------------------------------------------------------------CCCCTAAATCTTGGCAAGA 	2
------------------------------------------------------------------------------------------------------------CCCTAAATCTTGGCAAGAC 	1
------------------------------------------------------------------------------------------------------------CCCTAAATCTTGGCAAGACC 	25
--------------------------------------------------------------------------------------------------------------CTAAATCTTGGCAAGACCTAA 	24
---------------------------------------------------------------------------------------------------------------TAAATCTTGGCAAGACCTAAT 	2


Overlaps with: MNEST039570 MNEST051448
Overlaps with miRBase pre-miRNAs: ppt-MIR904a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Physcomitrella patens GSM115096 TCTTGTCAATGTTTAGGGGCA CCCCTAAATGTTGGCAAGACC up 2 0


Secondary structure

TATTTTGTGATGCTAATACGGTCTTGTCAATGTTTAGGGGCAAAGGTGCAACTATGCAACATCCCTGGTGCGAGCTCTTGATCGCGTAAGTGTTGCTAGTGCCCTCCACCCCTAAATGTTGGCAAGACCTAATTGGCGCACAACATT
-------------------GGTCTTGTCAATGTTTAGGGG 	1
-------------------GGTCTTGTCAATGTTTAGGG 	1
---------------------TCTTGTCAATGTTTAGGGGC 	21
---------------------TCTTGTCAATGTTTAGGGGCAA 	24
---------------------TCTTGTCAATGTTTAGGGGCA 	960
----------------------CTTGTCAATGTTTAGGGGCA 	192
----------------------CTTGTCAATGTTTAGGGGCAA 	6
----------------------CTTGTCAATGTTTAGGGGC 	1
-----------------------TTGTCAATGTTTAGGGGCAA 	5
-----------------------TTGTCAATGTTTAGGGGCA 	9
------------------------TGTCAATGTTTAGGGGCAA 	1
---------------------------------------------------------------------------------------------------------CCACCCCTAAATGTTGGCAAGACC 	1
-----------------------------------------------------------------------------------------------------------ACCCCTAAATGTTGGCAAGAC 	9
-----------------------------------------------------------------------------------------------------------ACCCCTAAATGTTGGCAAGACC 	3
------------------------------------------------------------------------------------------------------------CCCCTAAATGTTGGCAAGACC 	631
------------------------------------------------------------------------------------------------------------CCCCTAAATGTTGGCAAGAC 	9
------------------------------------------------------------------------------------------------------------CCCCTAAATGTTGGCAAGA 	2
-------------------------------------------------------------------------------------------------------------CCCTAAATGTTGGCAAGACC 	141
-------------------------------------------------------------------------------------------------------------CCCTAAATGTTGGCAAGAC 	14
--------------------------------------------------------------------------------------------------------------CCTAAATGTTGGCAAGACC 	1


Overlaps with: MNEST039571 MNEST051449
Overlaps with miRBase pre-miRNAs: ppt-MIR904b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Physcomitrella patens GSM115096 TCTTGTCAATGTTTAGGGGCA CCCCTAAATCTTGGCAAGACC up 3 0


Secondary structure

ATATTTGTGATGCTAATATGGTCTTGTCAATGTTTAGGGGCAAAGGCCTGATTATGCAGATGCTTGGTGTAAGCTTATGCTTGTACAACTTTTGCTATTGGCCTCCACCCCTAAATCTTGGCAAGACCTAATTAGCCCACAACATT
-----TGTGATGCTAATATGGTCTTGTC 	3
------------------TGGTCTTGTCAATGTTTAGGG 	45
-------------------GGTCTTGTCAATGTTTAGGGG 	1
-------------------GGTCTTGTCAATGTTTAGGG 	1
---------------------TCTTGTCAATGTTTAGGGGC 	21
---------------------TCTTGTCAATGTTTAGGGGCAA 	24
---------------------TCTTGTCAATGTTTAGGGGCA 	960
----------------------CTTGTCAATGTTTAGGGGCA 	192
----------------------CTTGTCAATGTTTAGGGGCAA 	6
----------------------CTTGTCAATGTTTAGGGGC 	1
-----------------------TTGTCAATGTTTAGGGGCAA 	5
-----------------------TTGTCAATGTTTAGGGGCA 	9
------------------------TGTCAATGTTTAGGGGCAA 	1
--------------------------------------------------------------------------------------------------------CCACCCCTAAATCTTGGCAAGACC 	2
----------------------------------------------------------------------------------------------------------ACCCCTAAATCTTGGCAAGAC 	2
----------------------------------------------------------------------------------------------------------ACCCCTAAATCTTGGCAAGACC 	2
-----------------------------------------------------------------------------------------------------------CCCCTAAATCTTGGCAAGACC 	466
-----------------------------------------------------------------------------------------------------------CCCCTAAATCTTGGCAAGAC 	8
-----------------------------------------------------------------------------------------------------------CCCCTAAATCTTGGCAAGA 	1
------------------------------------------------------------------------------------------------------------CCCTAAATCTTGGCAAGACC 	103
------------------------------------------------------------------------------------------------------------CCCTAAATCTTGGCAAGAC 	7
--------------------------------------------------------------------------------------------------------------CTAAATCTTGGCAAGACCTAAT 	1
--------------------------------------------------------------------------------------------------------------CTAAATCTTGGCAAGACCTAA 	9
---------------------------------------------------------------------------------------------------------------TAAATCTTGGCAAGACCTA 	1
---------------------------------------------------------------------------------------------------------------TAAATCTTGGCAAGACCTAA 	1


Overlaps with: MNEST039570 MNEST051448
Overlaps with miRBase pre-miRNAs: ppt-MIR904a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Physcomitrella patens GSM313216 TCTTGTCAATGTTTAGGGGCA CCCCTAAATGTTGGCAAGACC up 2 0


Secondary structure

TATTTTGTGATGCTAATACGGTCTTGTCAATGTTTAGGGGCAAAGGTGCAACTATGCAACATCCCTGGTGCGAGCTCTTGATCGCGTAAGTGTTGCTAGTGCCCTCCACCCCTAAATGTTGGCAAGACCTAATTGGCGCACAACATT
---------------------TCTTGTCAATGTTTAGGGGCAA 	153
---------------------TCTTGTCAATGTTTAGGGGCAAAG 	7
---------------------TCTTGTCAATGTTTAGGGGC 	102
---------------------TCTTGTCAATGTTTAGGGG 	12
---------------------TCTTGTCAATGTTTAGGGGCAAA 	5
---------------------TCTTGTCAATGTTTAGGGGCA 	3605
----------------------CTTGTCAATGTTTAGGGGCAA 	47
----------------------CTTGTCAATGTTTAGGGGCAAAG 	1
----------------------CTTGTCAATGTTTAGGGGCA 	964
----------------------CTTGTCAATGTTTAGGGGC 	25
-----------------------TTGTCAATGTTTAGGGGCA 	25
-----------------------TTGTCAATGTTTAGGGGCAAA 	1
-----------------------TTGTCAATGTTTAGGGGCAA 	8
-----------------------------------------------------------------------------------------------------------ACCCCTAAATGTTGGCAAGA 	1
-----------------------------------------------------------------------------------------------------------ACCCCTAAATGTTGGCAAGAC 	12
-----------------------------------------------------------------------------------------------------------ACCCCTAAATGTTGGCAAGACC 	2
------------------------------------------------------------------------------------------------------------CCCCTAAATGTTGGCAAGACC 	379
------------------------------------------------------------------------------------------------------------CCCCTAAATGTTGGCAAGAC 	21
------------------------------------------------------------------------------------------------------------CCCCTAAATGTTGGCAAGA 	7
-------------------------------------------------------------------------------------------------------------CCCTAAATGTTGGCAAGAC 	1
-------------------------------------------------------------------------------------------------------------CCCTAAATGTTGGCAAGACC 	23
--------------------------------------------------------------------------------------------------------------CCTAAATGTTGGCAAGACC 	2
---------------------------------------------------------------------------------------------------------------CTAAATGTTGGCAAGACCTAA 	1


Overlaps with: MNEST039571 MNEST051449
Overlaps with miRBase pre-miRNAs: ppt-MIR904b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Physcomitrella patens GSM313216 TCTTGTCAATGTTTAGGGGCA CCCCTAAATCTTGGCAAGACC up 3 0


Secondary structure

ATATTTGTGATGCTAATATGGTCTTGTCAATGTTTAGGGGCAAAGGCCTGATTATGCAGATGCTTGGTGTAAGCTTATGCTTGTACAACTTTTGCTATTGGCCTCCACCCCTAAATCTTGGCAAGACCTAATTAGCCCACAACATT
------------------TGGTCTTGTCAATGTTTAGGG 	22
---------------------TCTTGTCAATGTTTAGGGGCAA 	153
---------------------TCTTGTCAATGTTTAGGGGCAAAG 	7
---------------------TCTTGTCAATGTTTAGGGGC 	102
---------------------TCTTGTCAATGTTTAGGGG 	12
---------------------TCTTGTCAATGTTTAGGGGCAAA 	5
---------------------TCTTGTCAATGTTTAGGGGCA 	3605
----------------------CTTGTCAATGTTTAGGGGCAA 	47
----------------------CTTGTCAATGTTTAGGGGCAAAG 	1
----------------------CTTGTCAATGTTTAGGGGCA 	964
----------------------CTTGTCAATGTTTAGGGGC 	25
-----------------------TTGTCAATGTTTAGGGGCA 	25
-----------------------TTGTCAATGTTTAGGGGCAAA 	1
-----------------------TTGTCAATGTTTAGGGGCAA 	8
--------------------------------------------------------------------------------------------------------CCACCCCTAAATCTTGGCAAGACC 	1
--------------------------------------------------------------------------------------------------------CCACCCCTAAATCTTGGCAAG 	3
----------------------------------------------------------------------------------------------------------ACCCCTAAATCTTGGCAAGAC 	1
-----------------------------------------------------------------------------------------------------------CCCCTAAATCTTGGCAAGACCT 	1
-----------------------------------------------------------------------------------------------------------CCCCTAAATCTTGGCAAGACC 	231
-----------------------------------------------------------------------------------------------------------CCCCTAAATCTTGGCAAGAC 	5
-----------------------------------------------------------------------------------------------------------CCCCTAAATCTTGGCAAGA 	1
------------------------------------------------------------------------------------------------------------CCCTAAATCTTGGCAAGACC 	28
------------------------------------------------------------------------------------------------------------CCCTAAATCTTGGCAAGAC 	1
--------------------------------------------------------------------------------------------------------------CTAAATCTTGGCAAGACCTAA 	11
---------------------------------------------------------------------------------------------------------------TAAATCTTGGCAAGACCTAAT 	1


Overlaps with: MNEST039570 MNEST051448
Overlaps with miRBase pre-miRNAs: ppt-MIR904a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Physcomitrella patens GSM313214 TCTTGTCAATGTTTAGGGGCA CCCCTAAATGTTGGCAAGACC up 2 0


Secondary structure

TATTTTGTGATGCTAATACGGTCTTGTCAATGTTTAGGGGCAAAGGTGCAACTATGCAACATCCCTGGTGCGAGCTCTTGATCGCGTAAGTGTTGCTAGTGCCCTCCACCCCTAAATGTTGGCAAGACCTAATTGGCGCACAACATT
---------------------TCTTGTCAATGTTTAGGGG 	180
---------------------TCTTGTCAATGTTTAGGGGCAAA 	4
---------------------TCTTGTCAATGTTTAGGGGCAA 	187
---------------------TCTTGTCAATGTTTAGGGGC 	58
---------------------TCTTGTCAATGTTTAGGGGCA 	3938
----------------------CTTGTCAATGTTTAGGGGCAA 	124
----------------------CTTGTCAATGTTTAGGGGC 	9
----------------------CTTGTCAATGTTTAGGGGCA 	1930
-----------------------TTGTCAATGTTTAGGGGCA 	37
-----------------------TTGTCAATGTTTAGGGGCAA 	11
-----------------------------------------------------------------------------------------------------------ACCCCTAAATGTTGGCAAGACC 	3
-----------------------------------------------------------------------------------------------------------ACCCCTAAATGTTGGCAAGA 	4
-----------------------------------------------------------------------------------------------------------ACCCCTAAATGTTGGCAAGAC 	30
------------------------------------------------------------------------------------------------------------CCCCTAAATGTTGGCAAGAC 	64
------------------------------------------------------------------------------------------------------------CCCCTAAATGTTGGCAAGACC 	970
------------------------------------------------------------------------------------------------------------CCCCTAAATGTTGGCAAGACCT 	1
------------------------------------------------------------------------------------------------------------CCCCTAAATGTTGGCAAGA 	15
-------------------------------------------------------------------------------------------------------------CCCTAAATGTTGGCAAGACC 	57
-------------------------------------------------------------------------------------------------------------CCCTAAATGTTGGCAAGAC 	6
--------------------------------------------------------------------------------------------------------------CCTAAATGTTGGCAAGACC 	1
---------------------------------------------------------------------------------------------------------------CTAAATGTTGGCAAGACCTAA 	3


Overlaps with: MNEST039571 MNEST051449
Overlaps with miRBase pre-miRNAs: ppt-MIR904b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Physcomitrella patens GSM313214 TCTTGTCAATGTTTAGGGGCA CCCCTAAATCTTGGCAAGACC up 3 0


Secondary structure

ATATTTGTGATGCTAATATGGTCTTGTCAATGTTTAGGGGCAAAGGCCTGATTATGCAGATGCTTGGTGTAAGCTTATGCTTGTACAACTTTTGCTATTGGCCTCCACCCCTAAATCTTGGCAAGACCTAATTAGCCCACAACATT
------------------TGGTCTTGTCAATGTTTAGGG 	5
---------------------TCTTGTCAATGTTTAGGGG 	180
---------------------TCTTGTCAATGTTTAGGGGCAAA 	4
---------------------TCTTGTCAATGTTTAGGGGCAA 	187
---------------------TCTTGTCAATGTTTAGGGGC 	58
---------------------TCTTGTCAATGTTTAGGGGCA 	3938
----------------------CTTGTCAATGTTTAGGGGCAA 	124
----------------------CTTGTCAATGTTTAGGGGC 	9
----------------------CTTGTCAATGTTTAGGGGCA 	1930
-----------------------TTGTCAATGTTTAGGGGCA 	37
-----------------------TTGTCAATGTTTAGGGGCAA 	11
------------------------------------------AAGGCCTGATTATGCAGAT 	1
------------------------------------------AAGGCCTGATTATGCAGATGCTTGGT 	1
----------------------------------------------------------------------------------------------------------ACCCCTAAATCTTGGCAAGACC 	2
----------------------------------------------------------------------------------------------------------ACCCCTAAATCTTGGCAAGAC 	3
----------------------------------------------------------------------------------------------------------ACCCCTAAATCTTGGCAAGA 	1
-----------------------------------------------------------------------------------------------------------CCCCTAAATCTTGGCAAGA 	7
-----------------------------------------------------------------------------------------------------------CCCCTAAATCTTGGCAAGACC 	797
-----------------------------------------------------------------------------------------------------------CCCCTAAATCTTGGCAAGAC 	20
------------------------------------------------------------------------------------------------------------CCCTAAATCTTGGCAAGACC 	75
------------------------------------------------------------------------------------------------------------CCCTAAATCTTGGCAAGAC 	1
-------------------------------------------------------------------------------------------------------------CCTAAATCTTGGCAAGACC 	2
--------------------------------------------------------------------------------------------------------------CTAAATCTTGGCAAGACCTA 	1
--------------------------------------------------------------------------------------------------------------CTAAATCTTGGCAAGACCTAA 	36
---------------------------------------------------------------------------------------------------------------TAAATCTTGGCAAGACCTAAT 	2
---------------------------------------------------------------------------------------------------------------TAAATCTTGGCAAGACCTAA 	10
-------------------------------------------------------------------------------------------------------------------TCTTGGCAAGACCTAATTAG 	1


Overlaps with: MNEST039570 MNEST051448
Overlaps with miRBase pre-miRNAs: ppt-MIR904a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Physcomitrella patens GSM313217 TCTTGTCAATGTTTAGGGGCA CCCCTAAATGTTGGCAAGACC up 2 0


Secondary structure

TATTTTGTGATGCTAATACGGTCTTGTCAATGTTTAGGGGCAAAGGTGCAACTATGCAACATCCCTGGTGCGAGCTCTTGATCGCGTAAGTGTTGCTAGTGCCCTCCACCCCTAAATGTTGGCAAGACCTAATTGGCGCACAACATT
-------------------GGTCTTGTCAATGTTTAGGG 	1
---------------------TCTTGTCAATGTTTAGGGGCAAAG 	2
---------------------TCTTGTCAATGTTTAGGGGCAA 	154
---------------------TCTTGTCAATGTTTAGGGG 	10
---------------------TCTTGTCAATGTTTAGGGGCA 	3438
---------------------TCTTGTCAATGTTTAGGGGC 	117
---------------------TCTTGTCAATGTTTAGGGGCAAA 	5
----------------------CTTGTCAATGTTTAGGGGCAA 	43
----------------------CTTGTCAATGTTTAGGGGCA 	925
----------------------CTTGTCAATGTTTAGGGGCAAA 	3
----------------------CTTGTCAATGTTTAGGGGCAAAG 	1
----------------------CTTGTCAATGTTTAGGGGC 	27
-----------------------TTGTCAATGTTTAGGGGCAA 	10
-----------------------TTGTCAATGTTTAGGGGCA 	33
---------------------------------------------------------------------------------------------------------CCACCCCTAAATGTTGGCAAGACC 	1
----------------------------------------------------------------------------------------------------------CACCCCTAAATGTTGGCAAGACC 	1
-----------------------------------------------------------------------------------------------------------ACCCCTAAATGTTGGCAAGACC 	4
-----------------------------------------------------------------------------------------------------------ACCCCTAAATGTTGGCAAGAC 	4
------------------------------------------------------------------------------------------------------------CCCCTAAATGTTGGCAAGAC 	22
------------------------------------------------------------------------------------------------------------CCCCTAAATGTTGGCAAGACC 	318
------------------------------------------------------------------------------------------------------------CCCCTAAATGTTGGCAAGACCT 	1
------------------------------------------------------------------------------------------------------------CCCCTAAATGTTGGCAAGA 	7
-------------------------------------------------------------------------------------------------------------CCCTAAATGTTGGCAAGACC 	27
---------------------------------------------------------------------------------------------------------------CTAAATGTTGGCAAGACCTAA 	1


Overlaps with: MNEST039571 MNEST051449
Overlaps with miRBase pre-miRNAs: ppt-MIR904b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
18 Physcomitrella patens GSM313217 TCTTGTCAATGTTTAGGGGCA CCCCTAAATCTTGGCAAGACC up 3 0


Secondary structure

ATATTTGTGATGCTAATATGGTCTTGTCAATGTTTAGGGGCAAAGGCCTGATTATGCAGATGCTTGGTGTAAGCTTATGCTTGTACAACTTTTGCTATTGGCCTCCACCCCTAAATCTTGGCAAGACCTAATTAGCCCACAACATT
-------------TAATATGGTCTTGTCAATGTT 	1
------------------TGGTCTTGTCAATGTTTAGGG 	28
------------------TGGTCTTGTCAATGTTTAGG 	1
-------------------GGTCTTGTCAATGTTTAGGG 	1
---------------------TCTTGTCAATGTTTAGGGGCAAAG 	2
---------------------TCTTGTCAATGTTTAGGGGCAA 	154
---------------------TCTTGTCAATGTTTAGGGG 	10
---------------------TCTTGTCAATGTTTAGGGGCA 	3438
---------------------TCTTGTCAATGTTTAGGGGC 	117
---------------------TCTTGTCAATGTTTAGGGGCAAA 	5
----------------------CTTGTCAATGTTTAGGGGCAA 	43
----------------------CTTGTCAATGTTTAGGGGCA 	925
----------------------CTTGTCAATGTTTAGGGGCAAA 	3
----------------------CTTGTCAATGTTTAGGGGCAAAG 	1
----------------------CTTGTCAATGTTTAGGGGC 	27
-----------------------TTGTCAATGTTTAGGGGCAA 	10
-----------------------TTGTCAATGTTTAGGGGCA 	33
--------------------------------------------------------------------------------------------------------CCACCCCTAAATCTTGGCAAGACC 	1
----------------------------------------------------------------------------------------------------------ACCCCTAAATCTTGGCAAGAC 	2
-----------------------------------------------------------------------------------------------------------CCCCTAAATCTTGGCAAGACCT 	1
-----------------------------------------------------------------------------------------------------------CCCCTAAATCTTGGCAAGACC 	229
-----------------------------------------------------------------------------------------------------------CCCCTAAATCTTGGCAAGAC 	7
------------------------------------------------------------------------------------------------------------CCCTAAATCTTGGCAAGACC 	24
--------------------------------------------------------------------------------------------------------------CTAAATCTTGGCAAGACCTAA 	5
---------------------------------------------------------------------------------------------------------------TAAATCTTGGCAAGACCTAA 	2


Overlaps with: MNEST039570 MNEST051448
Overlaps with miRBase pre-miRNAs: ppt-MIR904a
HuntMi prediction: true miRNA