miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TCTTGTTAAAAAGCAGAGTCT

selected species: Mus musculus



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM527274-2107 TCTTGTTAAAAAGCAGAGTCT ATTCTGCATTTTTAGCAAGCTC up 1 1


Secondary structure

AAGATATTCGTCACCTAGGGATCTTGTTAAAAAGCAGAGTCTGATTGAGGGGCCAAGATTCTGCATTTTTAGCAAGCTCTCAAGTGATGCTAATGCT
---ATATTCGTCACCTAGGGAT 	1
---------------------TCTTGTTAAAAAGCAGAGTCT 	1012
---------------------TCTTGTTAAAAAGCAGAGTCTG 	1
---------------------TCTTGTTAAAAAGCAGAGTC 	25
---------------------TCTTGTTAAAAAGCAGAGT 	7
----------------------CTTGTTAAAAAGCAGAGTCT 	30
----------------------CTTGTTAAAAAGCAGAGTCTGA 	1
-------------------------------------------------------AGATTCTGCATTTTTAGCAAGC 	6
-------------------------------------------------------AGATTCTGCATTTTTAGCAAGCT 	6
--------------------------------------------------------GATTCTGCATTTTTAGCAAG 	1
---------------------------------------------------------ATTCTGCATTTTTAGCAAGCTC 	5
---------------------------------------------------------ATTCTGCATTTTTAGCAAG 	1
---------------------------------------------------------ATTCTGCATTTTTAGCAAGC 	25
---------------------------------------------------------ATTCTGCATTTTTAGCAAGCTCT 	1
---------------------------------------------------------ATTCTGCATTTTTAGCAAGCT 	34


Overlaps with: MNEST032209 MNEST032210
Overlaps with miRBase pre-miRNAs: mmu-mir-544
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM527280 TCTTGTTAAAAAGCAGAGTCT ATTCTGCATTTTTAGCAAGCTC up 1 1


Secondary structure

AAGATATTCGTCACCTAGGGATCTTGTTAAAAAGCAGAGTCTGATTGAGGGGCCAAGATTCTGCATTTTTAGCAAGCTCTCAAGTGATGCTAATGCT
-AGATATTCGTCACCTAGGGATCTT 	1
---------------------TCTTGTTAAAAAGCAGAGTCT 	327
---------------------TCTTGTTAAAAAGCAGAGTC 	8
---------------------TCTTGTTAAAAAGCAGAGT 	5
----------------------CTTGTTAAAAAGCAGAGTCT 	18
-----------------------TTGTTAAAAAGCAGAGTCT 	3
----------------------------------------------------CCAAGATTCTGCATTTTTAGC 	1
-------------------------------------------------------AGATTCTGCATTTTTAGCAAGC 	2
-------------------------------------------------------AGATTCTGCATTTTTAGCAAGCT 	3
--------------------------------------------------------GATTCTGCATTTTTAGCAAGCT 	1
---------------------------------------------------------ATTCTGCATTTTTAGCAAGCTCT 	1
---------------------------------------------------------ATTCTGCATTTTTAGCAAGCTC 	1
---------------------------------------------------------ATTCTGCATTTTTAGCAAGCT 	16
---------------------------------------------------------ATTCTGCATTTTTAGCAAGC 	8


Overlaps with: MNEST032209 MNEST032210
Overlaps with miRBase pre-miRNAs: mmu-mir-544
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM527276 TCTTGTTAAAAAGCAGAGTCT ATTCTGCATTTTTAGCAAGCTC up 1 1


Secondary structure

AAGATATTCGTCACCTAGGGATCTTGTTAAAAAGCAGAGTCTGATTGAGGGGCCAAGATTCTGCATTTTTAGCAAGCTCTCAAGTGATGCTAATGCT
---------------------TCTTGTTAAAAAGCAGAGTCT 	788
---------------------TCTTGTTAAAAAGCAGAGTC 	12
---------------------TCTTGTTAAAAAGCAGAGT 	8
---------------------TCTTGTTAAAAAGCAGAGTCTG 	1
----------------------CTTGTTAAAAAGCAGAGTCT 	21
-----------------------TTGTTAAAAAGCAGAGTCT 	2
---------------------------------------------------GCCAAGATTCTGCATTTTTAGCAAGC 	1
-----------------------------------------------------CAAGATTCTGCATTTTTAGCAAGCT 	1
-------------------------------------------------------AGATTCTGCATTTTTAGCAAGC 	1
-------------------------------------------------------AGATTCTGCATTTTTAGCAAGCT 	2
--------------------------------------------------------GATTCTGCATTTTTAGCAAGCT 	5
--------------------------------------------------------GATTCTGCATTTTTAGCAAGC 	2
---------------------------------------------------------ATTCTGCATTTTTAGCAAGCTCT 	2
---------------------------------------------------------ATTCTGCATTTTTAGCAAGCTC 	1
---------------------------------------------------------ATTCTGCATTTTTAGCAAGCT 	26
---------------------------------------------------------ATTCTGCATTTTTAGCAAGC 	11


Overlaps with: MNEST032209 MNEST032210
Overlaps with miRBase pre-miRNAs: mmu-mir-544
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Mus musculus GSM527277-2110 TCTTGTTAAAAAGCAGAGTCT ATTCTGCATTTTTAGCAAGCTC up 1 1


Secondary structure

AAGATATTCGTCACCTAGGGATCTTGTTAAAAAGCAGAGTCTGATTGAGGGGCCAAGATTCTGCATTTTTAGCAAGCTCTCAAGTGATGCTAATGCT
---------------------TCTTGTTAAAAAGCAGAGTCT 	893
---------------------TCTTGTTAAAAAGCAGAGTCTGA 	1
---------------------TCTTGTTAAAAAGCAGAGTC 	24
---------------------TCTTGTTAAAAAGCAGAGT 	15
----------------------CTTGTTAAAAAGCAGAGTCT 	28
-----------------------TTGTTAAAAAGCAGAGTCT 	2
----------------------------------------------------CCAAGATTCTGCATTTTTAGCAAGCT 	1
------------------------------------------------------AAGATTCTGCATTTTTAGCAAGC 	1
------------------------------------------------------AAGATTCTGCATTTTTAGCAAGCT 	1
-------------------------------------------------------AGATTCTGCATTTTTAGCAAGC 	5
-------------------------------------------------------AGATTCTGCATTTTTAGCAAGCT 	7
--------------------------------------------------------GATTCTGCATTTTTAGCAAGCT 	4
--------------------------------------------------------GATTCTGCATTTTTAGCAAGC 	7
---------------------------------------------------------ATTCTGCATTTTTAGCAAGC 	17
---------------------------------------------------------ATTCTGCATTTTTAGCAAGCTC 	5
---------------------------------------------------------ATTCTGCATTTTTAGCAAG 	2
---------------------------------------------------------ATTCTGCATTTTTAGCAAGCT 	32


Overlaps with: MNEST032209 MNEST032210
Overlaps with miRBase pre-miRNAs: mmu-mir-544
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Mus musculus GSM527279-2112 TCTTGTTAAAAAGCAGAGTCT ATTCTGCATTTTTAGCAAGCTC up 1 1


Secondary structure

AAGATATTCGTCACCTAGGGATCTTGTTAAAAAGCAGAGTCTGATTGAGGGGCCAAGATTCTGCATTTTTAGCAAGCTCTCAAGTGATGCTAATGCT
---ATATTCGTCACCTAGGGAT 	1
---------------------TCTTGTTAAAAAGCAGAGTCT 	1110
---------------------TCTTGTTAAAAAGCAGAGTC 	27
---------------------TCTTGTTAAAAAGCAGAGT 	16
----------------------CTTGTTAAAAAGCAGAGTCT 	40
-----------------------TTGTTAAAAAGCAGAGTCT 	6
------------------------------------------------------AAGATTCTGCATTTTTAGCAAGCT 	1
-------------------------------------------------------AGATTCTGCATTTTTAGCAAGC 	4
-------------------------------------------------------AGATTCTGCATTTTTAGCAAGCT 	14
--------------------------------------------------------GATTCTGCATTTTTAGCAAGCT 	6
--------------------------------------------------------GATTCTGCATTTTTAGCAAGC 	6
---------------------------------------------------------ATTCTGCATTTTTAGCAAGCTC 	6
---------------------------------------------------------ATTCTGCATTTTTAGCAAG 	2
---------------------------------------------------------ATTCTGCATTTTTAGCAAGC 	23
---------------------------------------------------------ATTCTGCATTTTTAGCAAGCTCT 	1
---------------------------------------------------------ATTCTGCATTTTTAGCAAGCT 	60
-----------------------------------------------------------TCTGCATTTTTAGCAAGCT 	1


Overlaps with: MNEST032209 MNEST032210
Overlaps with miRBase pre-miRNAs: mmu-mir-544
HuntMi prediction: true miRNA