miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TGAAACCGTCCAAAACTGAGGC

selected species: Drosophila melanogaster



11 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Drosophila melanogaster GSM360257-14325 TGAAACCGTCCAAAACTGAGGC CTTAGTTTTCGACGTGTTTTGGT down 2 1


Secondary structure

TCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGGAGTTCTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGTGA
----------------------------------------------------------TGAAACCGTCCAAAACTGAGGC 	5

Overlaps with: MNEST036489 MNEST036490
Overlaps with miRBase pre-miRNAs: dme-mir-957
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Drosophila melanogaster GSM399107-16288 TGAAACCGTCCAAAACTGAGGC CTTAGTTTTCGACGTGTTTTGGT down 2 1


Secondary structure

TCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGGAGTTCTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGTGA
----------------------------------------------------------TGAAACCGTCCAAAACTGAGGCC 	2
----------------------------------------------------------TGAAACCGTCCAAAACTGAGGC 	177
----------------------------------------------------------TGAAACCGTCCAAAACTGAG 	4
----------------------------------------------------------TGAAACCGTCCAAAACTGAGG 	140

Overlaps with: MNEST036489 MNEST036490
Overlaps with miRBase pre-miRNAs: dme-mir-957
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Drosophila melanogaster GSM466487_wt_total TGAAACCGTCCAAAACTGAGGC CTTAGTTTTCGACGTGTTTTGGT down 2 1


Secondary structure

TCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGGAGTTCTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGTGA
------------CTTAGTTTTCGACGTGTTTTG 	1
------------CTTAGTTTTCGACGTGTTTTGGT 	13
------------CTTAGTTTTCGACGTGTTTTGG 	1
----------------------------------------------------------TGAAACCGTCCAAAACTGAGGCC 	7
----------------------------------------------------------TGAAACCGTCCAAAACTGAGGC 	1795
----------------------------------------------------------TGAAACCGTCCAAAACTGAGG 	1541
----------------------------------------------------------TGAAACCGTCCAAAACTGA 	9
----------------------------------------------------------TGAAACCGTCCAAAACTGAG 	148
-----------------------------------------------------------GAAACCGTCCAAAACTGAGG 	58
-----------------------------------------------------------GAAACCGTCCAAAACTGAG 	6
-----------------------------------------------------------GAAACCGTCCAAAACTGAGGC 	74
------------------------------------------------------------AAACCGTCCAAAACTGAGG 	1
------------------------------------------------------------AAACCGTCCAAAACTGAGGC 	4
-------------------------------------------------------------AACCGTCCAAAACTGAGGC 	1

Overlaps with: MNEST036489 MNEST036490
Overlaps with miRBase pre-miRNAs: dme-mir-957
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Drosophila melanogaster GSM399105-16286 TGAAACCGTCCAAAACTGAGGC CTTAGTTTTCGACGTGTTTTGGT down 2 1


Secondary structure

TCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGGAGTTCTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGTGA
----------------------------------------------------------TGAAACCGTCCAAAACTGAGGC 	32
----------------------------------------------------------TGAAACCGTCCAAAACTGAGG 	5

Overlaps with: MNEST036489 MNEST036490
Overlaps with miRBase pre-miRNAs: dme-mir-957
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Drosophila melanogaster GSM360262-14327 TGAAACCGTCCAAAACTGAGGC CTTAGTTTTCGACGTGTTTTGGT down 2 1


Secondary structure

TCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGGAGTTCTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGTGA
----------------------------------------------------------TGAAACCGTCCAAAACTGAGGC 	50
----------------------------------------------------------TGAAACCGTCCAAAACTGAG 	2
----------------------------------------------------------TGAAACCGTCCAAAACTGAGG 	6

Overlaps with: MNEST036489 MNEST036490
Overlaps with miRBase pre-miRNAs: dme-mir-957
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Drosophila melanogaster GSM466496_r2d2_homozygotes_untreated TGAAACCGTCCAAAACTGAGGC CTTAGTTTTCGACGTGTTTTGGT down 2 1


Secondary structure

TCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGGAGTTCTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGTGA
------------CTTAGTTTTCGACGTGTTTTGGT 	21
-------------TTAGTTTTCGACGTGTTTTGGT 	1
----------------------------------------------------------TGAAACCGTCCAAAACTGAGGCC 	4
----------------------------------------------------------TGAAACCGTCCAAAACTGAGGC 	2927
----------------------------------------------------------TGAAACCGTCCAAAACTGAGG 	2228
----------------------------------------------------------TGAAACCGTCCAAAACTGA 	38
----------------------------------------------------------TGAAACCGTCCAAAACTGAG 	296
-----------------------------------------------------------GAAACCGTCCAAAACTGAGG 	120
-----------------------------------------------------------GAAACCGTCCAAAACTGAGGCC 	2
-----------------------------------------------------------GAAACCGTCCAAAACTGAG 	41
-----------------------------------------------------------GAAACCGTCCAAAACTGAGGC 	228
------------------------------------------------------------AAACCGTCCAAAACTGAGGC 	7

Overlaps with: MNEST036489 MNEST036490
Overlaps with miRBase pre-miRNAs: dme-mir-957
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Drosophila melanogaster GSM286605-9793 TGAAACCGTCCAAAACTGAGGC CTTAGTTTTCGACGTGTTTTGGT down 2 1


Secondary structure

TCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGGAGTTCTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGTGA
----------------------------------------------------------TGAAACCGTCCAAAACTGAGGC 	8
----------------------------------------------------------TGAAACCGTCCAAAACTGAGG 	6
----------------------------------------------------------TGAAACCGTCCAAAACTGAG 	2

Overlaps with: MNEST036489 MNEST036490
Overlaps with miRBase pre-miRNAs: dme-mir-957
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Drosophila melanogaster GSM360260-14326 TGAAACCGTCCAAAACTGAGGC CTTAGTTTTCGACGTGTTTTGGT down 2 1


Secondary structure

TCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGGAGTTCTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGTGA
------------CTTAGTTTTCGACGTGTTTTGG 	2
----------------------------------------------------------TGAAACCGTCCAAAACTGAGGC 	73
----------------------------------------------------------TGAAACCGTCCAAAACTGAG 	1
----------------------------------------------------------TGAAACCGTCCAAAACTGAGG 	5

Overlaps with: MNEST036489 MNEST036490
Overlaps with miRBase pre-miRNAs: dme-mir-957
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Drosophila melanogaster GSM322543-14323 TGAAACCGTCCAAAACTGAGGC CTTAGTTTTCGACGTGTTTTGGT down 2 1


Secondary structure

TCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGGAGTTCTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGTGA
------------CTTAGTTTTCGACGTGTTTTGGT 	9
----------------------------------------------------------TGAAACCGTCCAAAACTGAGGCC 	11
----------------------------------------------------------TGAAACCGTCCAAAACTGA 	5
----------------------------------------------------------TGAAACCGTCCAAAACTGAGGC 	2265
----------------------------------------------------------TGAAACCGTCCAAAACTGAGG 	1157
----------------------------------------------------------TGAAACCGTCCAAAACTGAG 	154
-----------------------------------------------------------GAAACCGTCCAAAACTGAGG 	6
-----------------------------------------------------------GAAACCGTCCAAAACTGAG 	1
-----------------------------------------------------------GAAACCGTCCAAAACTGAGGC 	9

Overlaps with: MNEST036489 MNEST036490
Overlaps with miRBase pre-miRNAs: dme-mir-957
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Drosophila melanogaster GSM286604-9792 TGAAACCGTCCAAAACTGAGGC CTTAGTTTTCGACGTGTTTTGGT down 2 1


Secondary structure

TCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGGAGTTCTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGTGA
----------------------------------------------------------TGAAACCGTCCAAAACTGAGGC 	35
----------------------------------------------------------TGAAACCGTCCAAAACTGAG 	2
----------------------------------------------------------TGAAACCGTCCAAAACTGAGG 	32

Overlaps with: MNEST036489 MNEST036490
Overlaps with miRBase pre-miRNAs: dme-mir-957
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Drosophila melanogaster GSM322208-14317 TGAAACCGTCCAAAACTGAGGC CTTAGTTTTCGACGTGTTTTGGT down 2 1


Secondary structure

TCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGGAGTTCTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGTGA
----------------------------------------------------------TGAAACCGTCCAAAACTGAGGC 	5
----------------------------------------------------------TGAAACCGTCCAAAACTGAGG 	1
----------------------------------------------------------TGAAACCGTCCAAAACTGAG 	1

Overlaps with: MNEST036489 MNEST036490
Overlaps with miRBase pre-miRNAs: dme-mir-957
HuntMi prediction: true miRNA