miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGAAACTTGCAAGAACGGGC

selected species: Ciona intestinalis



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Ciona intestinalis GSM343284-14444 TGAAACTTGCAAGAACGGGCCT TCCTTTCCAACAGGTTTCTAG up 6 0


Secondary structure

TGCAGTTCATTTGAAACTTGCAAGAACGGGCCTTGTTCTAACAAGTCCTTTCCAACAGGTTTCTAGTGAACCCC
-----------TGAAACTTGCAAGAACGGGCCTT 	63
-----------TGAAACTTGCAAGAACGGGCCT 	535
-----------TGAAACTTGCAAGAACGGGCC 	41
-----------TGAAACTTGCAAGAACGGGC 	177
-----------TGAAACTTGCAAGAACGGG 	96

Overlaps with: MNEST024886 MNEST024887
Overlaps with miRBase pre-miRNAs: cin-mir-4000d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Ciona intestinalis GSM343286 TGAAACTTGCAAGAACGGGC CCTTTCCAACAGGTTTCTAG up 5 0


Secondary structure

TGCAGTTCATTTGAAACTTGCAAGAACGGGCCTTGTTCTAACAAGTCCTTTCCAACAGGTTTCTAGTGAACCCC
-----------TGAAACTTGCAAGAACGGGC 	32

Overlaps with: MNEST024886 MNEST024887
Overlaps with miRBase pre-miRNAs: cin-mir-4000d
HuntMi prediction: true miRNA