miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGAAACTTGCGTGGAACGGG

selected species: Ciona intestinalis



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Ciona intestinalis GSM343286 TGAAACTTGCGTGGAACGGG CGTTGTAAACATGTTTCGAA up 5 0


Secondary structure

AAAACATTTCTGTTCTCATTTTGAAACTTGCGTGGAACGGGCCACTCTGCCAGGCCGTTGTAAACATGTTTCGAAATGCGTTTGAGATCTTTT
--------------------TTGAAACTTGCGTGGAACGG 	3
---------------------TGAAACTTGCGTGGAACGGG 	485
---------------------TGAAACTTGCGTGGAACGG 	11
----------------------GAAACTTGCGTGGAACGGGC 	1
--------------------------CTTGCGTGGAACGGGCCACT 	2

Overlaps with: MNEST024884 MNEST024885
Overlaps with miRBase pre-miRNAs: cin-mir-4000c
HuntMi prediction: true miRNA