miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGAACTTTACCACGAAAAGG

selected species: Ciona intestinalis



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Ciona intestinalis GSM343286 TGAACTTTACCACGAAAAGG TTTTCAGGTAGTTCACA up 2 3


Secondary structure

GCAATAAAGCTTCGGTTGATTTGAACTTTACCACGAAAAGGTCTGTCATATATAACACAGACTTTTCAGGTAGTTCACAAAAGCTGCGAGCCAAAGC
GCAATAAAGCTTCGGTTGAT 	1
---------------------TGAACTTTACCACGAAAAGGTCTG 	3
---------------------TGAACTTTACCACGAAAAGG 	473
---------------------TGAACTTTACCACGAAAAG 	5
-------------------------CTTTACCACGAAAAGGTCTG 	1
--------------------------TTTACCACGAAAAGGTCTGT 	6
---------------------------TTACCACGAAAAGGTCTGTC 	2
----------------------------------------------------------AGACTTTTCAGGTAGTTCAC 	220
----------------------------------------------------------AGACTTTTCAGGTAGTTCA 	1

Overlaps with: MNEST024862 MNEST024863
Overlaps with miRBase pre-miRNAs: cin-mir-1502b
HuntMi prediction: true miRNA