miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGAACTTTCCCAGGAATAAG

selected species: Ciona intestinalis



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Ciona intestinalis GSM343282-14442 TGAACTTTCCCAGGAATAAGTC CTTACTCCCGGGAGTTCTCG up 3 2


Secondary structure

GACTAAATTCATGAACTTTCCCAGGAATAAGTCTTTCTTTGTTATGTCAGACTTACTCCCGGGAGTTCTCGCCTCTTGT
-----------TGAACTTTCCCAGGAATAAGTC 	43
-----------TGAACTTTCCCAGGAATAAGT 	20
-----------TGAACTTTCCCAGGAATAAG 	4
--------------------------------------------------ACTTACTCCCGGGAGTTCTCG 	1


Overlaps with: MNEST024866 MNEST024867
Overlaps with miRBase pre-miRNAs: cin-mir-1502d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Ciona intestinalis GSM343286 TGAACTTTCCCAGGAATAAG TACTCCCGGGAGTTCTCG up 3 2


Secondary structure

GACTAAATTCATGAACTTTCCCAGGAATAAGTCTTTCTTTGTTATGTCAGACTTACTCCCGGGAGTTCTCGCCTCTTGT
-----------TGAACTTTCCCAGGAATAAGTCTT 	2
-----------TGAACTTTCCCAGGAATAAGTCT 	3
-----------TGAACTTTCCCAGGAATAAGT 	2
-----------TGAACTTTCCCAGGAATAAG 	3515
-----------TGAACTTTCCCAGGAATAA 	31
-------------AACTTTCCCAGGAATAAGTC 	2
--------------ACTTTCCCAGGAATAAGTCT 	2
-------------------------------------------------GACTTACTCCCGGGAGTTCT 	1
--------------------------------------------------ACTTACTCCCGGGAGTTCTC 	215
--------------------------------------------------ACTTACTCCCGGGAGTTCT 	1
---------------------------------------------------CTTACTCCCGGGAGTTCTCG 	1


Overlaps with: MNEST024866 MNEST024867
Overlaps with miRBase pre-miRNAs: cin-mir-1502d
HuntMi prediction: true miRNA