miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TGAAGCTGCCAGCATGATCTA

selected species: Brachypodium distachyon

6 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Brachypodium distachyon	GSM506620-12051	TGAAGCTGCCAGCATGATCTA	GATCATGCCTGACAGCCTCATT	up	2	1

Secondary structure

TGGGATGCTCATGTGAAAGAGTGAAGCTGCCAGCATGATCTAGCTTTGATCCAATGTATGTCTCTACGTGTGGATCCTTGTTAGATCATGCCTGACAGCCTCATTTCTTCGCAAACGTTTGGG
---------------------TGAAGCTGCCAGCATGATCTAGCT 	1
---------------------TGAAGCTGCCAGCATGATCTAGC 	2
---------------------TGAAGCTGCCAGCATGATCTAG 	8
---------------------TGAAGCTGCCAGCATGATCTA 	6554
---------------------TGAAGCTGCCAGCATGATCT 	371
---------------------TGAAGCTGCCAGCATGATC 	3
----------------------GAAGCTGCCAGCATGATCTAG 	1
----------------------GAAGCTGCCAGCATGATCTA 	6
-----------------------AAGCTGCCAGCATGATCTA 	6
------------------------------------------------------TGTATGTCTCTACGTGTGGATCC 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Brachypodium distachyon	GSM506620-12051	TGAAGCTGCCAGCATGATCTA	GATCATGCTGTGACAGTTTCACT	up	1	2

Secondary structure

CCATCCAACATCCAGTGCCCAAGAGAAAGCGTGAAGCTGCCAGCATGATCTATCTGACTTGTGGTGGCAAGTGCCACAGCAAATTCAGCAACGCCGTGGCTTCGGGGCCGGCAGTGTGGTTAGATCATGCTGTGACAGTTTCACTCTTTCCCCTGTTGGGCACACATAGGGAG
-------------------------------TGAAGCTGCCAGCATGATCTATCT 	1
-------------------------------TGAAGCTGCCAGCATGATCTAT 	8
-------------------------------TGAAGCTGCCAGCATGATCTA 	6554
-------------------------------TGAAGCTGCCAGCATGATCT 	371
-------------------------------TGAAGCTGCCAGCATGATC 	3
--------------------------------GAAGCTGCCAGCATGATCTAT 	1
--------------------------------GAAGCTGCCAGCATGATCTA 	6
---------------------------------AAGCTGCCAGCATGATCTA 	6
-----------------------------------------------------------------------------------------------------------------------TTAGATCATGCTGTGACAGTTTC 	3
-----------------------------------------------------------------------------------------------------------------------TTAGATCATGCTGTGACAGTTT 	3

Overlaps with: MNEST041749 MNEST048308
Overlaps with miRBase pre-miRNAs: bdi-MIR167a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Brachypodium distachyon	GSM506620-12051	TGAAGCTGCCAGCATGATCTA	GGTCATGCTGCGGCAGCCTCACT	up	1	2

Secondary structure

GTGCTACTTACTTACTGCCCGAGGGAACGAGTGAAGCTGCCAGCATGATCTAGCTCAGCGTGATCAAGCAAGATTCACACATACACGTGTGGTTTTTTTGAGCTATAGCTCGATTGATCTTGAGGTCATGCCTTGCTAGGTCATGCTGCGGCAGCCTCACTTCTTCCCGCCGTTTGGGCATGCACAGCT
-------------------------------TGAAGCTGCCAGCATGATCTAGCT 	1
-------------------------------TGAAGCTGCCAGCATGATCTAGC 	2
-------------------------------TGAAGCTGCCAGCATGATCTAG 	8
-------------------------------TGAAGCTGCCAGCATGATCTA 	6554
-------------------------------TGAAGCTGCCAGCATGATCT 	371
-------------------------------TGAAGCTGCCAGCATGATC 	3
--------------------------------GAAGCTGCCAGCATGATCTAG 	1
--------------------------------GAAGCTGCCAGCATGATCTA 	6
---------------------------------AAGCTGCCAGCATGATCTA 	6
-------------------------------------TGCCAGCATGATCTAGCTCAG 	2
-------------------------------------TGCCAGCATGATCTAGCTCA 	6
-------------------------------------TGCCAGCATGATCTAGCTC 	1
-------------------------------------------------------------------------------------------------------------------------------------TGCTAGGTCATGCTGCGGCAGC 	1
------------------------------------------------------------------------------------------------------------------------------------------GGTCATGCTGCGGCAGCCTCACT 	2

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Brachypodium distachyon	GSM506621-23192	TGAAGCTGCCAGCATGATCTA	GATCATGCCTGACAGCCTCATT	up	2	1

Secondary structure

TGGGATGCTCATGTGAAAGAGTGAAGCTGCCAGCATGATCTAGCTTTGATCCAATGTATGTCTCTACGTGTGGATCCTTGTTAGATCATGCCTGACAGCCTCATTTCTTCGCAAACGTTTGGG
---------------------TGAAGCTGCCAGCATGATC 	56
---------------------TGAAGCTGCCAGCATGATCT 	161
---------------------TGAAGCTGCCAGCATGATCTA 	3142
---------------------TGAAGCTGCCAGCATGATCTAG 	1
----------------------GAAGCTGCCAGCATGATCTA 	15
----------------------GAAGCTGCCAGCATGATCT 	1
------------------------------------------------------------------------------------ATCATGCCTGACAGCCTCATT 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Brachypodium distachyon	GSM506621-23192	TGAAGCTGCCAGCATGATCTA	GATCATGCTGTGACAGTTTCACT	up	1	2

Secondary structure

CCATCCAACATCCAGTGCCCAAGAGAAAGCGTGAAGCTGCCAGCATGATCTATCTGACTTGTGGTGGCAAGTGCCACAGCAAATTCAGCAACGCCGTGGCTTCGGGGCCGGCAGTGTGGTTAGATCATGCTGTGACAGTTTCACTCTTTCCCCTGTTGGGCACACATAGGGAG
-------------------------------TGAAGCTGCCAGCATGATCTATC 	1
-------------------------------TGAAGCTGCCAGCATGATCTAT 	9
-------------------------------TGAAGCTGCCAGCATGATC 	56
-------------------------------TGAAGCTGCCAGCATGATCT 	161
-------------------------------TGAAGCTGCCAGCATGATCTA 	3142
--------------------------------GAAGCTGCCAGCATGATCTA 	15
--------------------------------GAAGCTGCCAGCATGATCT 	1
---------------------------------------------------------------------------------------------------------------------------ATCATGCTGTGACAGTTTCACT 	1

Overlaps with: MNEST041749 MNEST048308
Overlaps with miRBase pre-miRNAs: bdi-MIR167a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Brachypodium distachyon	GSM506621-23192	TGAAGCTGCCAGCATGATCTA	GGTCATGCTGCGGCAGCCTCACT	up	1	2

Secondary structure

GTGCTACTTACTTACTGCCCGAGGGAACGAGTGAAGCTGCCAGCATGATCTAGCTCAGCGTGATCAAGCAAGATTCACACATACACGTGTGGTTTTTTTGAGCTATAGCTCGATTGATCTTGAGGTCATGCCTTGCTAGGTCATGCTGCGGCAGCCTCACTTCTTCCCGCCGTTTGGGCATGCACAGCT
-------------------------------TGAAGCTGCCAGCATGATC 	56
-------------------------------TGAAGCTGCCAGCATGATCT 	161
-------------------------------TGAAGCTGCCAGCATGATCTA 	3142
-------------------------------TGAAGCTGCCAGCATGATCTAG 	1
--------------------------------GAAGCTGCCAGCATGATCTA 	15
--------------------------------GAAGCTGCCAGCATGATCT 	1
---------------------------------------------------------------------------------------------------------------------------------------CTAGGTCATGCTGCGGCAGCCTCACT 	1
------------------------------------------------------------------------------------------------------------------------------------------GGTCATGCTGCGGCAGCCTCACT 	14
------------------------------------------------------------------------------------------------------------------------------------------GGTCATGCTGCGGCAGCCTCAC 	2

HuntMi prediction: true miRNA