miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TGAAGCTGCCAGCATGATCTA

selected species: Solanum lycopersicum



8 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Solanum lycopersicum GSM304985 TGAAGCTGCCAGCATGATCTA GATCATGTGGCAGCCTTACC up 2 1


Secondary structure

ACCACTACTTACATCGTGCAGCACTAGCAGTTGAAGCTGCCAGCATGATCTAAACTTTCCTTTTAGTTCAAATATAATTCGAGGAAAGATCAGATCATGTGGCAGCCTTACCTGTCAATGCCATCACGAATTATTAAACA
-------------------------------TGAAGCTGCCAGCATGATCTAAA 	8
-------------------------------TGAAGCTGCCAGCATGATCTAA 	57
-------------------------------TGAAGCTGCCAGCATGATCTA 	205
-------------------------------TGAAGCTGCCAGCATGATCT 	21
-------------------------------TGAAGCTGCCAGCATGATC 	44
----------------------------------AGCTGCCAGCATGATCTAA 	1


Overlaps with: MNEST041533 MNEST054545
Overlaps with miRBase pre-miRNAs: sly-MIR167
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Solanum lycopersicum GSM304985 TGAAGCTGCCAGCATGATCTA GATCATGTGGTTGCTTCACC up 2 1


Secondary structure

ATAGCGTAGACTACTATCAGTTGAAGCTGCCAGCATGATCTAAACTTACCTATAAATTTATATTAAGGCAAGATCAGATCATGTGGTTGCTTCACCTGTTAGTTCGTACTACGA
---------------------TGAAGCTGCCAGCATGATCTAAA 	8
---------------------TGAAGCTGCCAGCATGATCTAA 	57
---------------------TGAAGCTGCCAGCATGATCTA 	205
---------------------TGAAGCTGCCAGCATGATCT 	21
---------------------TGAAGCTGCCAGCATGATC 	44
------------------------AGCTGCCAGCATGATCTAA 	1
------------------------------------------------------------------------ATCAGATCATGTGGTTGCTTC 	1
-------------------------------------------------------------------------TCAGATCATGTGGTTGCTTCA 	1
-------------------------------------------------------------------------TCAGATCATGTGGTTGCTTC 	1
--------------------------------------------------------------------------CAGATCATGTGGTTGCTTCA 	1
---------------------------------------------------------------------------AGATCATGTGGTTGCTTCACC 	5
---------------------------------------------------------------------------AGATCATGTGGTTGCTTCA 	3
----------------------------------------------------------------------------GATCATGTGGTTGCTTCACC 	2
----------------------------------------------------------------------------GATCATGTGGTTGCTTCAC 	1


Overlaps with: MNEST045267
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Solanum lycopersicum GSM304985 TGAAGCTGCCAGCATGATCTA GGTCATGCTCGGACAGCCTCACT up 1 2


Secondary structure

ATATGTGATTTAAGTTTGTTATTTGTATGAAAGGGTCTAGAGTGGAACAAGTGAAGCTGCCAGCATGATCTAAACTTGGCCATTTATAAAGAAAATGGGTGACTAAGGTTAGGTCATGCTCGGACAGCCTCACTCCTTCCTTTCTTGATAACGGATTATGAAAAAACATTATCTTAATTTAT
---------------------------------------------------TGAAGCTGCCAGCATGATCTAAA 	8
---------------------------------------------------TGAAGCTGCCAGCATGATCTAA 	57
---------------------------------------------------TGAAGCTGCCAGCATGATCTA 	205
---------------------------------------------------TGAAGCTGCCAGCATGATCT 	21
---------------------------------------------------TGAAGCTGCCAGCATGATC 	44
------------------------------------------------------AGCTGCCAGCATGATCTAA 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Solanum lycopersicum GSM304985 TGAAGCTGCCAGCATGATCTA GATCATGTGGCAGCATCACC up 2 1


Secondary structure

GGATCGTGAACCACTAGCAGTTGAAGCTGCCAGCATGATCTAAACTTTTCTATTGCTCCGTACGAGGAAAGATCAGATCATGTGGCAGCATCACCTGTTGATGGTTTCGCGGA
---------------------TGAAGCTGCCAGCATGATCTAAA 	8
---------------------TGAAGCTGCCAGCATGATCTAA 	57
---------------------TGAAGCTGCCAGCATGATCTA 	205
---------------------TGAAGCTGCCAGCATGATCT 	21
---------------------TGAAGCTGCCAGCATGATC 	44
------------------------AGCTGCCAGCATGATCTAA 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Solanum lycopersicum GSM304986 TGAAGCTGCCAGCATGATCTA GATCATGTGGCAGCCTTACC up 2 1


Secondary structure

ACCACTACTTACATCGTGCAGCACTAGCAGTTGAAGCTGCCAGCATGATCTAAACTTTCCTTTTAGTTCAAATATAATTCGAGGAAAGATCAGATCATGTGGCAGCCTTACCTGTCAATGCCATCACGAATTATTAAACA
-------------------------------TGAAGCTGCCAGCATGATCTAAA 	1
-------------------------------TGAAGCTGCCAGCATGATCTAA 	28
-------------------------------TGAAGCTGCCAGCATGATCTA 	175
-------------------------------TGAAGCTGCCAGCATGATCT 	23
-------------------------------TGAAGCTGCCAGCATGATC 	61


Overlaps with: MNEST041533 MNEST054545
Overlaps with miRBase pre-miRNAs: sly-MIR167
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Solanum lycopersicum GSM304986 TGAAGCTGCCAGCATGATCTA GATCATGTGGCAGCATCACC up 2 1


Secondary structure

GGATCGTGAACCACTAGCAGTTGAAGCTGCCAGCATGATCTAAACTTTTCTATTGCTCCGTACGAGGAAAGATCAGATCATGTGGCAGCATCACCTGTTGATGGTTTCGCGGA
---------------------TGAAGCTGCCAGCATGATCTAAA 	1
---------------------TGAAGCTGCCAGCATGATCTAA 	28
---------------------TGAAGCTGCCAGCATGATCTA 	175
---------------------TGAAGCTGCCAGCATGATCT 	23
---------------------TGAAGCTGCCAGCATGATC 	61
-------------------------------------------------------------------------CAGATCATGTGGCAGCATCA 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Solanum lycopersicum GSM304986 TGAAGCTGCCAGCATGATCTA GATCATGTGGTTGCTTCACC up 2 1


Secondary structure

ATAGCGTAGACTACTATCAGTTGAAGCTGCCAGCATGATCTAAACTTACCTATAAATTTATATTAAGGCAAGATCAGATCATGTGGTTGCTTCACCTGTTAGTTCGTACTACGA
---------------------TGAAGCTGCCAGCATGATCTAAA 	1
---------------------TGAAGCTGCCAGCATGATCTAA 	28
---------------------TGAAGCTGCCAGCATGATCTA 	175
---------------------TGAAGCTGCCAGCATGATCT 	23
---------------------TGAAGCTGCCAGCATGATC 	61
-------------------------------------------------------------------------TCAGATCATGTGGTTGCTTCA 	5
-------------------------------------------------------------------------TCAGATCATGTGGTTGCTTC 	2
---------------------------------------------------------------------------AGATCATGTGGTTGCTTCACC 	8
---------------------------------------------------------------------------AGATCATGTGGTTGCTTCA 	1
----------------------------------------------------------------------------GATCATGTGGTTGCTTCACC 	17
----------------------------------------------------------------------------GATCATGTGGTTGCTTCAC 	1


Overlaps with: MNEST045267
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Solanum lycopersicum GSM304986 TGAAGCTGCCAGCATGATCTA GGTCATGCTCGGACAGCCTCACT up 1 2


Secondary structure

ATATGTGATTTAAGTTTGTTATTTGTATGAAAGGGTCTAGAGTGGAACAAGTGAAGCTGCCAGCATGATCTAAACTTGGCCATTTATAAAGAAAATGGGTGACTAAGGTTAGGTCATGCTCGGACAGCCTCACTCCTTCCTTTCTTGATAACGGATTATGAAAAAACATTATCTTAATTTAT
--------------------------------------------------GTGAAGCTGCCAGCATGATCTA 	1
---------------------------------------------------TGAAGCTGCCAGCATGATCTAAA 	1
---------------------------------------------------TGAAGCTGCCAGCATGATCTAA 	28
---------------------------------------------------TGAAGCTGCCAGCATGATCTA 	175
---------------------------------------------------TGAAGCTGCCAGCATGATCT 	23
---------------------------------------------------TGAAGCTGCCAGCATGATC 	61



HuntMi prediction: true miRNA