miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGAAGCTGCCAGCATGATCTA

selected species: Vitis vinifera



12 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Vitis vinifera GSM458927 TGAAGCTGCCAGCATGATCTAA AGATCATGTGGCAGTTTCACC up 2 1


Secondary structure

TTCTTCTTCTAATGGGTGCACCACTATCAGTTGAAGCTGCCAGCATGATCTAAACTTGCTTCCCTTTGTGAACAGAGATCAGATCATGTGGCAGTTTCACCTGTTGTTGGTAGCACAAGAAACCCTAAT
---------------------------CAGTTGAAGCTGCCAGCATGATC 	1
---------------------------CAGTTGAAGCTGCCAGCATGAT 	27
---------------------------CAGTTGAAGCTGCCAGCATGA 	2
----------------------------AGTTGAAGCTGCCAGCATGA 	1
-----------------------------GTTGAAGCTGCCAGCATGATCT 	1
-----------------------------GTTGAAGCTGCCAGCATGATC 	1
------------------------------TTGAAGCTGCCAGCATGATCTAA 	15
------------------------------TTGAAGCTGCCAGCATGATCTA 	508
------------------------------TTGAAGCTGCCAGCATGATCT 	34
------------------------------TTGAAGCTGCCAGCATGATC 	11
-------------------------------TGAAGCTGCCAGCATGATCTAAAC 	6
-------------------------------TGAAGCTGCCAGCATGATCTAAA 	258
-------------------------------TGAAGCTGCCAGCATGATCTAA 	36853
-------------------------------TGAAGCTGCCAGCATGATCTA 	13556
-------------------------------TGAAGCTGCCAGCATGATCT 	278
-------------------------------TGAAGCTGCCAGCATGATC 	114
--------------------------------GAAGCTGCCAGCATGATCTAAA 	4
--------------------------------GAAGCTGCCAGCATGATCTAA 	165
--------------------------------GAAGCTGCCAGCATGATCTA 	62
--------------------------------GAAGCTGCCAGCATGATCT 	2
---------------------------------AAGCTGCCAGCATGATCTAA 	3
----------------------------------AGCTGCCAGCATGATCTAA 	8
-----------------------------------------------------------------------------ATCAGATCATGTGGCAGTTTCACC 	3
------------------------------------------------------------------------------TCAGATCATGTGGCAGTTTCA 	1
------------------------------------------------------------------------------TCAGATCATGTGGCAGTTTC 	1
-------------------------------------------------------------------------------CAGATCATGTGGCAGTTTCACC 	2
-------------------------------------------------------------------------------CAGATCATGTGGCAGTTTCAC 	159
-------------------------------------------------------------------------------CAGATCATGTGGCAGTTTCA 	4
--------------------------------------------------------------------------------AGATCATGTGGCAGTTTCACC 	45
--------------------------------------------------------------------------------AGATCATGTGGCAGTTTCAC 	10
--------------------------------------------------------------------------------AGATCATGTGGCAGTTTCA 	1
---------------------------------------------------------------------------------GATCATGTGGCAGTTTCACC 	38
---------------------------------------------------------------------------------GATCATGTGGCAGTTTCAC 	1


Overlaps with: MNEST041595 MNEST054801
Overlaps with miRBase pre-miRNAs: vvi-MIR167e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Vitis vinifera GSM458927 TGAAGCTGCCAGCATGATCTAA AGATCATGTGGCAGTTTCACC up 1 1


Secondary structure

ATGATCCATCTTATCATGCACCAATAGCAGTTGAAGCTGCCAGCATGATCTAAGCTTTTCTGTTGCCCACCCTTTCTCCAGGAAAGACTAGATCATGTGGCAGTTTCACCTGTTGATGGAAGCATGAGAAACCCTAAT
---------------------------CAGTTGAAGCTGCCAGCATGATC 	1
---------------------------CAGTTGAAGCTGCCAGCATGAT 	27
---------------------------CAGTTGAAGCTGCCAGCATGA 	2
----------------------------AGTTGAAGCTGCCAGCATGA 	1
-----------------------------GTTGAAGCTGCCAGCATGATCT 	1
-----------------------------GTTGAAGCTGCCAGCATGATC 	1
------------------------------TTGAAGCTGCCAGCATGATCTAAGC 	1
------------------------------TTGAAGCTGCCAGCATGATCTAA 	15
------------------------------TTGAAGCTGCCAGCATGATCTA 	508
------------------------------TTGAAGCTGCCAGCATGATCT 	34
------------------------------TTGAAGCTGCCAGCATGATC 	11
-------------------------------TGAAGCTGCCAGCATGATCTAAGC 	56
-------------------------------TGAAGCTGCCAGCATGATCTAAG 	2005
-------------------------------TGAAGCTGCCAGCATGATCTAA 	36853
-------------------------------TGAAGCTGCCAGCATGATCTA 	13556
-------------------------------TGAAGCTGCCAGCATGATCT 	278
-------------------------------TGAAGCTGCCAGCATGATC 	114
--------------------------------GAAGCTGCCAGCATGATCTAAG 	4
--------------------------------GAAGCTGCCAGCATGATCTAA 	165
--------------------------------GAAGCTGCCAGCATGATCTA 	62
--------------------------------GAAGCTGCCAGCATGATCT 	2
---------------------------------AAGCTGCCAGCATGATCTAA 	3
----------------------------------AGCTGCCAGCATGATCTAA 	8
--------------------------------------------------------------------------------------ACTAGATCATGTGGCAGTTTCACC 	2
---------------------------------------------------------------------------------------CTAGATCATGTGGCAGTTTCACC 	1
---------------------------------------------------------------------------------------CTAGATCATGTGGCAGTTTCA 	8
---------------------------------------------------------------------------------------CTAGATCATGTGGCAGTTTC 	1
-----------------------------------------------------------------------------------------AGATCATGTGGCAGTTTCACC 	45
-----------------------------------------------------------------------------------------AGATCATGTGGCAGTTTCAC 	10
-----------------------------------------------------------------------------------------AGATCATGTGGCAGTTTCA 	1
------------------------------------------------------------------------------------------GATCATGTGGCAGTTTCACC 	38
------------------------------------------------------------------------------------------GATCATGTGGCAGTTTCAC 	1


Overlaps with: MNEST041592 MNEST054798
Overlaps with miRBase pre-miRNAs: vvi-MIR167b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Vitis vinifera GSM458927 TGAAGCTGCCAGCATGATCTA GGTCATGCCCTGACAGCCTCACT up 2 2


Secondary structure

CAGAGTCTCCAAGGGAATAAGTGAAGCTGCCAGCATGATCTAGCTTTGGCTAGGGATACAGAGAAAGAGAGAGATCAGAGCTAACCCTAGCTAGGTCATGCCCTGACAGCCTCACTCCTTCCTTCTTGAGGCCC
---------------------TGAAGCTGCCAGCATGATCTAG 	49
---------------------TGAAGCTGCCAGCATGATCTA 	13556
---------------------TGAAGCTGCCAGCATGATCT 	278
---------------------TGAAGCTGCCAGCATGATC 	114
----------------------GAAGCTGCCAGCATGATCTAG 	2
----------------------GAAGCTGCCAGCATGATCTA 	62
----------------------GAAGCTGCCAGCATGATCT 	2


Overlaps with: MNEST041594 MNEST054800
Overlaps with miRBase pre-miRNAs: vvi-MIR167d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Vitis vinifera GSM458930-2718 TGAAGCTGCCAGCATGATCTAA AGATCATGTGGCAGTTTCACC up 2 1


Secondary structure

TTCTTCTTCTAATGGGTGCACCACTATCAGTTGAAGCTGCCAGCATGATCTAAACTTGCTTCCCTTTGTGAACAGAGATCAGATCATGTGGCAGTTTCACCTGTTGTTGGTAGCACAAGAAACCCTAAT
---------------------------CAGTTGAAGCTGCCAGCATGAT 	12
------------------------------TTGAAGCTGCCAGCATGATCTAA 	2
------------------------------TTGAAGCTGCCAGCATGATCTA 	115
------------------------------TTGAAGCTGCCAGCATGATCT 	13
------------------------------TTGAAGCTGCCAGCATGATC 	2
-------------------------------TGAAGCTGCCAGCATGATCTAAAC 	2
-------------------------------TGAAGCTGCCAGCATGATCTAAA 	88
-------------------------------TGAAGCTGCCAGCATGATCTAA 	16297
-------------------------------TGAAGCTGCCAGCATGATCTA 	6227
-------------------------------TGAAGCTGCCAGCATGATCT 	509
-------------------------------TGAAGCTGCCAGCATGATC 	357
--------------------------------GAAGCTGCCAGCATGATCTAAA 	4
--------------------------------GAAGCTGCCAGCATGATCTAA 	53
--------------------------------GAAGCTGCCAGCATGATCTA 	13
--------------------------------GAAGCTGCCAGCATGATCT 	3
---------------------------------AAGCTGCCAGCATGATCTAA 	5
---------------------------------AAGCTGCCAGCATGATCTA 	1
----------------------------------AGCTGCCAGCATGATCTAA 	1
-----------------------------------------------------------------------------ATCAGATCATGTGGCAGTTTCACC 	4
------------------------------------------------------------------------------TCAGATCATGTGGCAGTTTCACC 	1
------------------------------------------------------------------------------TCAGATCATGTGGCAGTTTCAC 	1
------------------------------------------------------------------------------TCAGATCATGTGGCAGTTTCA 	2
-------------------------------------------------------------------------------CAGATCATGTGGCAGTTTCACC 	1
-------------------------------------------------------------------------------CAGATCATGTGGCAGTTTCAC 	188
-------------------------------------------------------------------------------CAGATCATGTGGCAGTTTCA 	5
--------------------------------------------------------------------------------AGATCATGTGGCAGTTTCACC 	39
--------------------------------------------------------------------------------AGATCATGTGGCAGTTTCAC 	16
---------------------------------------------------------------------------------GATCATGTGGCAGTTTCACC 	11


Overlaps with: MNEST041595 MNEST054801
Overlaps with miRBase pre-miRNAs: vvi-MIR167e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Vitis vinifera GSM458930-2718 TGAAGCTGCCAGCATGATCTAA AGATCATGTGGCAGTTTCACC up 1 1


Secondary structure

ATGATCCATCTTATCATGCACCAATAGCAGTTGAAGCTGCCAGCATGATCTAAGCTTTTCTGTTGCCCACCCTTTCTCCAGGAAAGACTAGATCATGTGGCAGTTTCACCTGTTGATGGAAGCATGAGAAACCCTAAT
---------------------------CAGTTGAAGCTGCCAGCATGAT 	12
------------------------------TTGAAGCTGCCAGCATGATCTAA 	2
------------------------------TTGAAGCTGCCAGCATGATCTA 	115
------------------------------TTGAAGCTGCCAGCATGATCT 	13
------------------------------TTGAAGCTGCCAGCATGATC 	2
-------------------------------TGAAGCTGCCAGCATGATCTAAGC 	19
-------------------------------TGAAGCTGCCAGCATGATCTAAG 	638
-------------------------------TGAAGCTGCCAGCATGATCTAA 	16297
-------------------------------TGAAGCTGCCAGCATGATCTA 	6227
-------------------------------TGAAGCTGCCAGCATGATCT 	509
-------------------------------TGAAGCTGCCAGCATGATC 	357
--------------------------------GAAGCTGCCAGCATGATCTAAG 	1
--------------------------------GAAGCTGCCAGCATGATCTAA 	53
--------------------------------GAAGCTGCCAGCATGATCTA 	13
--------------------------------GAAGCTGCCAGCATGATCT 	3
---------------------------------AAGCTGCCAGCATGATCTAA 	5
---------------------------------AAGCTGCCAGCATGATCTA 	1
----------------------------------AGCTGCCAGCATGATCTAA 	1
------------------------------------CTGCCAGCATGATCTAAGC 	1
--------------------------------------------------------------------------------------ACTAGATCATGTGGCAGTTTCACC 	15
---------------------------------------------------------------------------------------CTAGATCATGTGGCAGTTTCA 	8
-----------------------------------------------------------------------------------------AGATCATGTGGCAGTTTCACC 	39
-----------------------------------------------------------------------------------------AGATCATGTGGCAGTTTCAC 	16
------------------------------------------------------------------------------------------GATCATGTGGCAGTTTCACC 	11


Overlaps with: MNEST041592 MNEST054798
Overlaps with miRBase pre-miRNAs: vvi-MIR167b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Vitis vinifera GSM458930-2718 TGAAGCTGCCAGCATGATCTA GGTCATGCCCTGACAGCCTCACT up 2 2


Secondary structure

CAGAGTCTCCAAGGGAATAAGTGAAGCTGCCAGCATGATCTAGCTTTGGCTAGGGATACAGAGAAAGAGAGAGATCAGAGCTAACCCTAGCTAGGTCATGCCCTGACAGCCTCACTCCTTCCTTCTTGAGGCCC
---------------------TGAAGCTGCCAGCATGATCTAG 	26
---------------------TGAAGCTGCCAGCATGATCTA 	6227
---------------------TGAAGCTGCCAGCATGATCT 	509
---------------------TGAAGCTGCCAGCATGATC 	357
----------------------GAAGCTGCCAGCATGATCTA 	13
----------------------GAAGCTGCCAGCATGATCT 	3
-----------------------AAGCTGCCAGCATGATCTA 	1


Overlaps with: MNEST041594 MNEST054800
Overlaps with miRBase pre-miRNAs: vvi-MIR167d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Vitis vinifera GSM458929-2717 TGAAGCTGCCAGCATGATCTAA AGATCATGTGGCAGTTTCACC up 2 1


Secondary structure

TTCTTCTTCTAATGGGTGCACCACTATCAGTTGAAGCTGCCAGCATGATCTAAACTTGCTTCCCTTTGTGAACAGAGATCAGATCATGTGGCAGTTTCACCTGTTGTTGGTAGCACAAGAAACCCTAAT
---------------------------CAGTTGAAGCTGCCAGCATGAT 	10
-----------------------------GTTGAAGCTGCCAGCATGATCTA 	1
-----------------------------GTTGAAGCTGCCAGCATGATCT 	1
------------------------------TTGAAGCTGCCAGCATGATCTA 	219
------------------------------TTGAAGCTGCCAGCATGATCT 	54
------------------------------TTGAAGCTGCCAGCATGATC 	18
------------------------------TTGAAGCTGCCAGCATGAT 	1
-------------------------------TGAAGCTGCCAGCATGATCTAAAC 	2
-------------------------------TGAAGCTGCCAGCATGATCTAAA 	33
-------------------------------TGAAGCTGCCAGCATGATCTAA 	7754
-------------------------------TGAAGCTGCCAGCATGATCTA 	5235
-------------------------------TGAAGCTGCCAGCATGATCT 	320
-------------------------------TGAAGCTGCCAGCATGATC 	154
--------------------------------GAAGCTGCCAGCATGATCTAAA 	1
--------------------------------GAAGCTGCCAGCATGATCTAA 	23
--------------------------------GAAGCTGCCAGCATGATCTA 	15
--------------------------------GAAGCTGCCAGCATGATCT 	2
-------------------------------------------------------------------------------CAGATCATGTGGCAGTTTCAC 	52
-------------------------------------------------------------------------------CAGATCATGTGGCAGTTTCA 	2
--------------------------------------------------------------------------------AGATCATGTGGCAGTTTCACC 	23
--------------------------------------------------------------------------------AGATCATGTGGCAGTTTCAC 	3
--------------------------------------------------------------------------------AGATCATGTGGCAGTTTCA 	1
---------------------------------------------------------------------------------GATCATGTGGCAGTTTCACC 	9
---------------------------------------------------------------------------------GATCATGTGGCAGTTTCAC 	1


Overlaps with: MNEST041595 MNEST054801
Overlaps with miRBase pre-miRNAs: vvi-MIR167e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Vitis vinifera GSM458929-2717 TGAAGCTGCCAGCATGATCTAA AGATCATGTGGCAGTTTCACC up 1 1


Secondary structure

ATGATCCATCTTATCATGCACCAATAGCAGTTGAAGCTGCCAGCATGATCTAAGCTTTTCTGTTGCCCACCCTTTCTCCAGGAAAGACTAGATCATGTGGCAGTTTCACCTGTTGATGGAAGCATGAGAAACCCTAAT
---------------------------CAGTTGAAGCTGCCAGCATGAT 	10
-----------------------------GTTGAAGCTGCCAGCATGATCTA 	1
-----------------------------GTTGAAGCTGCCAGCATGATCT 	1
------------------------------TTGAAGCTGCCAGCATGATCTAAG 	2
------------------------------TTGAAGCTGCCAGCATGATCTA 	219
------------------------------TTGAAGCTGCCAGCATGATCT 	54
------------------------------TTGAAGCTGCCAGCATGATC 	18
------------------------------TTGAAGCTGCCAGCATGAT 	1
-------------------------------TGAAGCTGCCAGCATGATCTAAGC 	8
-------------------------------TGAAGCTGCCAGCATGATCTAAG 	646
-------------------------------TGAAGCTGCCAGCATGATCTAA 	7754
-------------------------------TGAAGCTGCCAGCATGATCTA 	5235
-------------------------------TGAAGCTGCCAGCATGATCT 	320
-------------------------------TGAAGCTGCCAGCATGATC 	154
--------------------------------GAAGCTGCCAGCATGATCTAAG 	2
--------------------------------GAAGCTGCCAGCATGATCTAA 	23
--------------------------------GAAGCTGCCAGCATGATCTA 	15
--------------------------------GAAGCTGCCAGCATGATCT 	2
--------------------------------------------------------------------------------------ACTAGATCATGTGGCAGTTTCACC 	5
--------------------------------------------------------------------------------------ACTAGATCATGTGGCAGTTTC 	1
---------------------------------------------------------------------------------------CTAGATCATGTGGCAGTTTCACC 	3
---------------------------------------------------------------------------------------CTAGATCATGTGGCAGTTTCA 	16
-----------------------------------------------------------------------------------------AGATCATGTGGCAGTTTCACC 	23
-----------------------------------------------------------------------------------------AGATCATGTGGCAGTTTCAC 	3
-----------------------------------------------------------------------------------------AGATCATGTGGCAGTTTCA 	1
------------------------------------------------------------------------------------------GATCATGTGGCAGTTTCACC 	9
------------------------------------------------------------------------------------------GATCATGTGGCAGTTTCAC 	1


Overlaps with: MNEST041592 MNEST054798
Overlaps with miRBase pre-miRNAs: vvi-MIR167b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Vitis vinifera GSM458929-2717 TGAAGCTGCCAGCATGATCTA GGTCATGCCCTGACAGCCTCACT up 2 2


Secondary structure

CAGAGTCTCCAAGGGAATAAGTGAAGCTGCCAGCATGATCTAGCTTTGGCTAGGGATACAGAGAAAGAGAGAGATCAGAGCTAACCCTAGCTAGGTCATGCCCTGACAGCCTCACTCCTTCCTTCTTGAGGCCC
--------------------GTGAAGCTGCCAGCATGATCTA 	1
---------------------TGAAGCTGCCAGCATGATCTAGC 	1
---------------------TGAAGCTGCCAGCATGATCTAG 	7
---------------------TGAAGCTGCCAGCATGATCTA 	5235
---------------------TGAAGCTGCCAGCATGATCT 	320
---------------------TGAAGCTGCCAGCATGATC 	154
----------------------GAAGCTGCCAGCATGATCTA 	15
----------------------GAAGCTGCCAGCATGATCT 	2


Overlaps with: MNEST041594 MNEST054800
Overlaps with miRBase pre-miRNAs: vvi-MIR167d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Vitis vinifera GSM458928-2716 TGAAGCTGCCAGCATGATCTAA AGATCATGTGGCAGTTTCACC up 2 1


Secondary structure

TTCTTCTTCTAATGGGTGCACCACTATCAGTTGAAGCTGCCAGCATGATCTAAACTTGCTTCCCTTTGTGAACAGAGATCAGATCATGTGGCAGTTTCACCTGTTGTTGGTAGCACAAGAAACCCTAAT
------------------------------TTGAAGCTGCCAGCATGATCTA 	1
-------------------------------TGAAGCTGCCAGCATGATCTAA 	135
-------------------------------TGAAGCTGCCAGCATGATCTA 	128
-------------------------------TGAAGCTGCCAGCATGATCT 	2
-------------------------------------------------------------------------------CAGATCATGTGGCAGTTTCAC 	2
--------------------------------------------------------------------------------AGATCATGTGGCAGTTTCAC 	3
---------------------------------------------------------------------------------GATCATGTGGCAGTTTCACC 	1


Overlaps with: MNEST041595 MNEST054801
Overlaps with miRBase pre-miRNAs: vvi-MIR167e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Vitis vinifera GSM458928-2716 TGAAGCTGCCAGCATGATCTAA AGATCATGTGGCAGTTTCACC up 1 1


Secondary structure

ATGATCCATCTTATCATGCACCAATAGCAGTTGAAGCTGCCAGCATGATCTAAGCTTTTCTGTTGCCCACCCTTTCTCCAGGAAAGACTAGATCATGTGGCAGTTTCACCTGTTGATGGAAGCATGAGAAACCCTAAT
------------------------------TTGAAGCTGCCAGCATGATCTA 	1
-------------------------------TGAAGCTGCCAGCATGATCTAAG 	10
-------------------------------TGAAGCTGCCAGCATGATCTAA 	135
-------------------------------TGAAGCTGCCAGCATGATCTA 	128
-------------------------------TGAAGCTGCCAGCATGATCT 	2
--------------------------------------------------------------------------------------ACTAGATCATGTGGCAGTTTCACC 	2
-----------------------------------------------------------------------------------------AGATCATGTGGCAGTTTCAC 	3
------------------------------------------------------------------------------------------GATCATGTGGCAGTTTCACC 	1


Overlaps with: MNEST041592 MNEST054798
Overlaps with miRBase pre-miRNAs: vvi-MIR167b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Vitis vinifera GSM458928-2716 TGAAGCTGCCAGCATGATCTA GGTCATGCCCTGACAGCCTCACT up 2 2


Secondary structure

CAGAGTCTCCAAGGGAATAAGTGAAGCTGCCAGCATGATCTAGCTTTGGCTAGGGATACAGAGAAAGAGAGAGATCAGAGCTAACCCTAGCTAGGTCATGCCCTGACAGCCTCACTCCTTCCTTCTTGAGGCCC
---------------------TGAAGCTGCCAGCATGATCTA 	128
---------------------TGAAGCTGCCAGCATGATCT 	2


Overlaps with: MNEST041594 MNEST054800
Overlaps with miRBase pre-miRNAs: vvi-MIR167d
HuntMi prediction: true miRNA