miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGAAGCTGCCAGCATGATCTC

selected species: Vitis vinifera



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Vitis vinifera GSM458930-2718 TGAAGCTGCCAGCATGATCTC GATCATGTGGTAGCCTCACC up 2 1


Secondary structure

CCAGTAGCAGTTGAAGCTGCCAGCATGATCTCAACTTCCCTATACAAGTCAAGGAAAGATCAGATCATGTGGTAGCCTCACCTGTTGATG
-------CAGTTGAAGCTGCCAGCATGAT 	12
----------TTGAAGCTGCCAGCATGATCTC 	1
----------TTGAAGCTGCCAGCATGATCT 	13
----------TTGAAGCTGCCAGCATGATC 	2
-----------TGAAGCTGCCAGCATGATCTCAAC 	8
-----------TGAAGCTGCCAGCATGATCTCAA 	5
-----------TGAAGCTGCCAGCATGATCTCA 	1512
-----------TGAAGCTGCCAGCATGATCTC 	13398
-----------TGAAGCTGCCAGCATGATCT 	509
-----------TGAAGCTGCCAGCATGATC 	357
------------GAAGCTGCCAGCATGATCTCA 	5
------------GAAGCTGCCAGCATGATCTC 	18
------------GAAGCTGCCAGCATGATCT 	3
-------------AAGCTGCCAGCATGATCTC 	2
--------------AGCTGCCAGCATGATCTCA 	1
--------------------------------------------------------------GATCATGTGGTAGCCTCACC 	1
-----------------------------------------------------------------CATGTGGTAGCCTCACCTGTT 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Vitis vinifera GSM458929-2717 TGAAGCTGCCAGCATGATCTC GATCATGTGGTAGCCTCACC up 2 1


Secondary structure

CCAGTAGCAGTTGAAGCTGCCAGCATGATCTCAACTTCCCTATACAAGTCAAGGAAAGATCAGATCATGTGGTAGCCTCACCTGTTGATG
-------CAGTTGAAGCTGCCAGCATGAT 	10
---------GTTGAAGCTGCCAGCATGATCT 	1
----------TTGAAGCTGCCAGCATGATCTC 	2
----------TTGAAGCTGCCAGCATGATCT 	54
----------TTGAAGCTGCCAGCATGATC 	18
----------TTGAAGCTGCCAGCATGAT 	1
-----------TGAAGCTGCCAGCATGATCTCAAC 	1
-----------TGAAGCTGCCAGCATGATCTCA 	288
-----------TGAAGCTGCCAGCATGATCTC 	2577
-----------TGAAGCTGCCAGCATGATCT 	320
-----------TGAAGCTGCCAGCATGATC 	154
------------GAAGCTGCCAGCATGATCTC 	12
------------GAAGCTGCCAGCATGATCT 	2
-----------------------------------------------------------TCAGATCATGTGGTAGCCTC 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Vitis vinifera GSM458928-2716 TGAAGCTGCCAGCATGATCTC GATCATGTGGTAGCCTCACC up 2 1


Secondary structure

CCAGTAGCAGTTGAAGCTGCCAGCATGATCTCAACTTCCCTATACAAGTCAAGGAAAGATCAGATCATGTGGTAGCCTCACCTGTTGATG
-----------TGAAGCTGCCAGCATGATCTCA 	2
-----------TGAAGCTGCCAGCATGATCTC 	45
-----------TGAAGCTGCCAGCATGATCT 	2



HuntMi prediction: true miRNA