miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGAAGCTGCCAGCATGATCTGA

selected species: Brachypodium distachyon



8 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Brachypodium distachyon GSM506620-12051 TGAAGCTGCCAGCATGATCTGA AGGTCATGCTGGAGTTTCATC up 0 1


Secondary structure

GAAAGGGTATCATGTGCACCATACAAGCTGGTGAAGCTGCCAGCATGATCTGATCTGACCATATATCTAGATTGGCATGGATGGATATGTGATATGATCTGATCAGGTCATGCTGGAGTTTCATCTGCTGGTTGGGAGCACGATCGAAAACCC
-------------------------------TGAAGCTGCCAGCATGATCTGATC 	6
-------------------------------TGAAGCTGCCAGCATGATCTGAT 	15
-------------------------------TGAAGCTGCCAGCATGATCTGA 	28334
-------------------------------TGAAGCTGCCAGCATGATCTG 	847
-------------------------------TGAAGCTGCCAGCATGATCT 	371
-------------------------------TGAAGCTGCCAGCATGATC 	3
--------------------------------GAAGCTGCCAGCATGATCTGAT 	2
--------------------------------GAAGCTGCCAGCATGATCTGA 	22
---------------------------------AAGCTGCCAGCATGATCTGATCTGA 	3
---------------------------------AAGCTGCCAGCATGATCTGATCTG 	2
---------------------------------AAGCTGCCAGCATGATCTGA 	36
---------------------------------AAGCTGCCAGCATGATCTG 	1
----------------------------------AGCTGCCAGCATGATCTGATCTGA 	1
----------------------------------AGCTGCCAGCATGATCTGA 	14
-----------------------------------GCTGCCAGCATGATCTGATC 	1
----------------------------------------------------------------------------ATGGATGGATATGTGATAT 	1
--------------------------------------------------------------------------------------------------------AGGTCATGCTGGAGTTTCATC 	4
-----------------------------------------------------------------------------------------------------------TCATGCTGGAGTTTCATCTGC 	11
------------------------------------------------------------------------------------------------------------CATGCTGGAGTTTCATCTGCT 	1
------------------------------------------------------------------------------------------------------------------GGAGTTTCATCTGCTGGTTGG 	1
--------------------------------------------------------------------------------------------------------------------AGTTTCATCTGCTGGTTGGG 	1
-----------------------------------------------------------------------------------------------------------------------------TGCTGGTTGGGAGCACGATC 	5



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Brachypodium distachyon GSM506620-12051 TGAAGCTGCCAGCATGATCTGA AGATCATGTTGCAGCTTCACT up 0 1


Secondary structure

ATGGACGGCTCAATTTGATGGTGTGAGAGGTTGAAGCTGCCAGCATGATCTGATCACCGTCCAACGTAACCGAACACATGTCGATCGACTTCCGATTGCGCCGGTTATCTTGGTAGGAATATATATATATGAGCTTCCATTGCAAGGGTTCTTCAGATCATGTTGCAGCTTCACTCTCTCATCACCACCGAAAGATCCAAATT
-------------------------------TGAAGCTGCCAGCATGATCTGATC 	6
-------------------------------TGAAGCTGCCAGCATGATCTGAT 	15
-------------------------------TGAAGCTGCCAGCATGATCTGA 	28334
-------------------------------TGAAGCTGCCAGCATGATCTG 	847
-------------------------------TGAAGCTGCCAGCATGATCT 	371
-------------------------------TGAAGCTGCCAGCATGATC 	3
--------------------------------GAAGCTGCCAGCATGATCTGAT 	2
--------------------------------GAAGCTGCCAGCATGATCTGA 	22
---------------------------------AAGCTGCCAGCATGATCTGA 	36
---------------------------------AAGCTGCCAGCATGATCTG 	1
----------------------------------AGCTGCCAGCATGATCTGATCA 	1
----------------------------------AGCTGCCAGCATGATCTGA 	14
-----------------------------------GCTGCCAGCATGATCTGATCA 	1
-----------------------------------GCTGCCAGCATGATCTGATC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------CTTCAGATCATGTTGCAGCTT 	3
-------------------------------------------------------------------------------------------------------------------------------------------------------TTCAGATCATGTTGCAGCTTC 	3
-------------------------------------------------------------------------------------------------------------------------------------------------------TTCAGATCATGTTGCAGCTT 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------TCAGATCATGTTGCAGCTTCA 	4
--------------------------------------------------------------------------------------------------------------------------------------------------------TCAGATCATGTTGCAGCTTC 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Brachypodium distachyon GSM506620-12051 TGAAGCTGCCAGCATGATCTGA AGATCATGCTGTGCAGTTTCATC up 0 1


Secondary structure

TGTGGTGCATCTTCTAGGAGCTGAAGCTGCCAGCATGATCTGACGAGAGTTCCTCGTCTGATAGCAATGTTTAATTCTCTTGTCATGACTAATGATCAGATCATGCTGTGCAGTTTCATCTGCTTGTGGATGCACAAG
--------------------CTGAAGCTGCCAGCATGATCTGA 	4
--------------------CTGAAGCTGCCAGCATGATCTG 	2
--------------------CTGAAGCTGCCAGCATGATCT 	1
---------------------TGAAGCTGCCAGCATGATCTGAC 	8
---------------------TGAAGCTGCCAGCATGATCTGA 	28334
---------------------TGAAGCTGCCAGCATGATCTG 	847
---------------------TGAAGCTGCCAGCATGATCT 	371
---------------------TGAAGCTGCCAGCATGATC 	3
----------------------GAAGCTGCCAGCATGATCTGA 	22
-----------------------AAGCTGCCAGCATGATCTGAC 	1
-----------------------AAGCTGCCAGCATGATCTGA 	36
-----------------------AAGCTGCCAGCATGATCTG 	1
------------------------AGCTGCCAGCATGATCTGA 	14


Overlaps with: MNEST041751
Overlaps with miRBase pre-miRNAs: bdi-MIR167c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Brachypodium distachyon GSM506620-12051 TGAAGCTGCCAGCATGATCTGA AGATCATCTGGCAGCTTCATT up 1 1


Secondary structure

CCACAAGTAGATGAAGCTGCCAGCATGATCTGAACTCCACGCACCACATGTGTATCTTGGTGCTGTGTACTCGATCTTCAGATTGATTACATGCACGCATGAGAAACTGTGCAGGCGATCTGCAGATCATCTGGCAGCTTCATTTTCTCATG
-----------TGAAGCTGCCAGCATGATCTGAA 	81
-----------TGAAGCTGCCAGCATGATCTGA 	28334
-----------TGAAGCTGCCAGCATGATCTG 	847
-----------TGAAGCTGCCAGCATGATCT 	371
-----------TGAAGCTGCCAGCATGATC 	3
------------GAAGCTGCCAGCATGATCTGA 	22
-------------AAGCTGCCAGCATGATCTGA 	36
-------------AAGCTGCCAGCATGATCTG 	1
--------------AGCTGCCAGCATGATCTGA 	14



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Brachypodium distachyon GSM506621-23192 TGAAGCTGCCAGCATGATCTGA AGGTCATGCTGGAGTTTCATC up 0 1


Secondary structure

GAAAGGGTATCATGTGCACCATACAAGCTGGTGAAGCTGCCAGCATGATCTGATCTGACCATATATCTAGATTGGCATGGATGGATATGTGATATGATCTGATCAGGTCATGCTGGAGTTTCATCTGCTGGTTGGGAGCACGATCGAAAACCC
-------------------------------TGAAGCTGCCAGCATGATCTGA 	4607
-------------------------------TGAAGCTGCCAGCATGATC 	56
-------------------------------TGAAGCTGCCAGCATGATCT 	161
-------------------------------TGAAGCTGCCAGCATGATCTG 	707
-------------------------------TGAAGCTGCCAGCATGATCTGAT 	8
--------------------------------GAAGCTGCCAGCATGATCT 	1
--------------------------------GAAGCTGCCAGCATGATCTGA 	30
--------------------------------GAAGCTGCCAGCATGATCTG 	2
---------------------------------AAGCTGCCAGCATGATCTGA 	3
--------------------------------------------ATGATCTGATCTGACCATATA 	2
---------------------------------------------------------------------------CATGGATGGATATGTGATATGAT 	1
--------------------------------------------------------------------------------------------------------AGGTCATGCTGGAGTTTCATC 	8
--------------------------------------------------------------------------------------------------------AGGTCATGCTGGAGTTTCATCT 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Brachypodium distachyon GSM506621-23192 TGAAGCTGCCAGCATGATCTGA AGATCATGTTGCAGCTTCACT up 0 1


Secondary structure

ATGGACGGCTCAATTTGATGGTGTGAGAGGTTGAAGCTGCCAGCATGATCTGATCACCGTCCAACGTAACCGAACACATGTCGATCGACTTCCGATTGCGCCGGTTATCTTGGTAGGAATATATATATATGAGCTTCCATTGCAAGGGTTCTTCAGATCATGTTGCAGCTTCACTCTCTCATCACCACCGAAAGATCCAAATT
-----------------------TGAGAGGTTGAAGCTGCCAGC 	1
-------------------------------TGAAGCTGCCAGCATGATCTGA 	4607
-------------------------------TGAAGCTGCCAGCATGATC 	56
-------------------------------TGAAGCTGCCAGCATGATCT 	161
-------------------------------TGAAGCTGCCAGCATGATCTG 	707
-------------------------------TGAAGCTGCCAGCATGATCTGAT 	8
--------------------------------GAAGCTGCCAGCATGATCT 	1
--------------------------------GAAGCTGCCAGCATGATCTGA 	30
--------------------------------GAAGCTGCCAGCATGATCTG 	2
---------------------------------AAGCTGCCAGCATGATCTGA 	3
------------------------------------------------------------------------------------------------------------------------------------------------------CTTCAGATCATGTTGCAGCTT 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------TTCAGATCATGTTGCAGCT 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------TCAGATCATGTTGCAGCTTCA 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------AGATCATGTTGCAGCTTCACT 	10



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Brachypodium distachyon GSM506621-23192 TGAAGCTGCCAGCATGATCTGA AGATCATGCTGTGCAGTTTCATC up 0 1


Secondary structure

TGTGGTGCATCTTCTAGGAGCTGAAGCTGCCAGCATGATCTGACGAGAGTTCCTCGTCTGATAGCAATGTTTAATTCTCTTGTCATGACTAATGATCAGATCATGCTGTGCAGTTTCATCTGCTTGTGGATGCACAAG
--------------------CTGAAGCTGCCAGCATGATCTG 	3
--------------------CTGAAGCTGCCAGCATGATCTGA 	1
---------------------TGAAGCTGCCAGCATGATCTGA 	4607
---------------------TGAAGCTGCCAGCATGATCTGACG 	2
---------------------TGAAGCTGCCAGCATGATC 	56
---------------------TGAAGCTGCCAGCATGATCT 	161
---------------------TGAAGCTGCCAGCATGATCTG 	707
---------------------TGAAGCTGCCAGCATGATCTGAC 	2
----------------------GAAGCTGCCAGCATGATCT 	1
----------------------GAAGCTGCCAGCATGATCTGA 	30
----------------------GAAGCTGCCAGCATGATCTG 	2
-----------------------AAGCTGCCAGCATGATCTGAC 	1
-----------------------AAGCTGCCAGCATGATCTGA 	3


Overlaps with: MNEST041751
Overlaps with miRBase pre-miRNAs: bdi-MIR167c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Brachypodium distachyon GSM506621-23192 TGAAGCTGCCAGCATGATCTGA AGATCATCTGGCAGCTTCATT up 1 1


Secondary structure

CCACAAGTAGATGAAGCTGCCAGCATGATCTGAACTCCACGCACCACATGTGTATCTTGGTGCTGTGTACTCGATCTTCAGATTGATTACATGCACGCATGAGAAACTGTGCAGGCGATCTGCAGATCATCTGGCAGCTTCATTTTCTCATG
-----------TGAAGCTGCCAGCATGATCTGA 	4607
-----------TGAAGCTGCCAGCATGATCTGAA 	74
-----------TGAAGCTGCCAGCATGATC 	56
-----------TGAAGCTGCCAGCATGATCT 	161
-----------TGAAGCTGCCAGCATGATCTG 	707
------------GAAGCTGCCAGCATGATCT 	1
------------GAAGCTGCCAGCATGATCTGA 	30
------------GAAGCTGCCAGCATGATCTGAA 	1
------------GAAGCTGCCAGCATGATCTG 	2
-------------AAGCTGCCAGCATGATCTGA 	3



HuntMi prediction: true miRNA