miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TGAAGCTGCCAGCATGATCTT

selected species: Glycine max



10 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Glycine max GSM543396 TGAAGCTGCCAGCATGATCTT GATCATGTGGCAGTTTCACC up 1 1


Secondary structure

CCATCATGCACCACTACCAGTTGAAGCTGCCAGCATGATCTTAACTTCCCTCACTTGCCGTGGAAAGATCAGATCATGTGGCAGTTTCACCTAGTAGTTGCTGGCCGCA
--------------------TTGAAGCTGCCAGCATGATCTT 	252
--------------------TTGAAGCTGCCAGCATGATCT 	20
---------------------TGAAGCTGCCAGCATGATCTTAA 	20
---------------------TGAAGCTGCCAGCATGATCTTA 	26636
---------------------TGAAGCTGCCAGCATGATCTT 	54054
---------------------TGAAGCTGCCAGCATGATCT 	1322
---------------------TGAAGCTGCCAGCATGATC 	1021
----------------------GAAGCTGCCAGCATGATCTT 	32
-------------------------------------------------------------------ATCAGATCATGTGGCAGTTTCACC 	114
--------------------------------------------------------------------TCAGATCATGTGGCAGTTTCACC 	143
--------------------------------------------------------------------TCAGATCATGTGGCAGTTTCA 	26
--------------------------------------------------------------------TCAGATCATGTGGCAGTTTCAC 	10
---------------------------------------------------------------------CAGATCATGTGGCAGTTTCACC 	29
----------------------------------------------------------------------AGATCATGTGGCAGTTTCACCT 	18
----------------------------------------------------------------------AGATCATGTGGCAGTTTCACC 	1794
----------------------------------------------------------------------AGATCATGTGGCAGTTTCAC 	46
-----------------------------------------------------------------------GATCATGTGGCAGTTTCACCT 	35
-----------------------------------------------------------------------GATCATGTGGCAGTTTCACC 	1038
------------------------------------------------------------------------ATCATGTGGCAGTTTCACCT 	22



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Glycine max GSM543396 TGAAGCTGCCAGCATGATCTT GATCATGTGGCAGTTTCACC up 1 1


Secondary structure

TATCTGTCTACCATCATGCACCACTACCAGTTGAAGCTGCCAGCATGATCTTAACTTCCCTCACTTGCTGTGGAAAGATCAGATCATGTGGCAGTTTCACCTAGTAGTTGTTGGCCGCATGAACCCTAG
------------------------------TTGAAGCTGCCAGCATGATCTT 	252
------------------------------TTGAAGCTGCCAGCATGATCT 	20
-------------------------------TGAAGCTGCCAGCATGATCTTAA 	20
-------------------------------TGAAGCTGCCAGCATGATCTTA 	26636
-------------------------------TGAAGCTGCCAGCATGATCTT 	54054
-------------------------------TGAAGCTGCCAGCATGATCT 	1322
-------------------------------TGAAGCTGCCAGCATGATC 	1021
--------------------------------GAAGCTGCCAGCATGATCTT 	32
-----------------------------------------------------------------------------ATCAGATCATGTGGCAGTTTCACC 	114
------------------------------------------------------------------------------TCAGATCATGTGGCAGTTTCACC 	143
------------------------------------------------------------------------------TCAGATCATGTGGCAGTTTCA 	26
------------------------------------------------------------------------------TCAGATCATGTGGCAGTTTCAC 	10
-------------------------------------------------------------------------------CAGATCATGTGGCAGTTTCACC 	29
--------------------------------------------------------------------------------AGATCATGTGGCAGTTTCACCT 	18
--------------------------------------------------------------------------------AGATCATGTGGCAGTTTCACC 	1794
--------------------------------------------------------------------------------AGATCATGTGGCAGTTTCAC 	46
---------------------------------------------------------------------------------GATCATGTGGCAGTTTCACCT 	35
---------------------------------------------------------------------------------GATCATGTGGCAGTTTCACC 	1038
----------------------------------------------------------------------------------ATCATGTGGCAGTTTCACCT 	22


Overlaps with: MNEST040446
Overlaps with miRBase pre-miRNAs: gma-MIR167f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Glycine max GSM852280 TGAAGCTGCCAGCATGATCTTA AGATCATGTGGCAGTTTCACC up 2 1


Secondary structure

CCATCATGCACCACTACCAGTTGAAGCTGCCAGCATGATCTTAACTTCCCTCACTTGCCGTGGAAAGATCAGATCATGTGGCAGTTTCACCTAGTAGTTGCTGGCCGCA
--------------TACCAGTTGAAGCTGCCAGC 	2
---------------ACCAGTTGAAGCTGCCAGCATGA 	3
---------------------TGAAGCTGCCAGCATGATCTTAAC 	26
---------------------TGAAGCTGCCAGCATGATCTTA 	5464
---------------------TGAAGCTGCCAGCATGATCTTAA 	5
----------------------GAAGCTGCCAGCATGATCTT 	1
----------------------GAAGCTGCCAGCATGATCTTA 	3
----------------------GAAGCTGCCAGCATGATCTTA 	3
----------------------GAAGCTGCCAGCATGATCTT 	1
----------------------GAAGCTGCCAGCATGATCT 	1
-----------------------AAGCTGCCAGCATGATCTT 	4
-----------------------AAGCTGCCAGCATGATCTTA 	1
-----------------------AAGCTGCCAGCATGATCTTA 	1
------------------------------------------------------------TGGAAAGATCAGATCATGTGGCA 	4
-------------------------------------------------------------------ATCAGATCATGTGGCAGTTTCACC 	286
--------------------------------------------------------------------TCAGATCATGTGGCAGTTTCACC 	1
--------------------------------------------------------------------TCAGATCATGTGGCAGTTTCACC 	1
---------------------------------------------------------------------CAGATCATGTGGCAGTTTCACC 	3
---------------------------------------------------------------------CAGATCATGTGGCAGTTTCACCT 	1
----------------------------------------------------------------------AGATCATGTGGCAGTTTCACC 	1326
----------------------------------------------------------------------AGATCATGTGGCAGTTTCAC 	32
----------------------------------------------------------------------AGATCATGTGGCAGTTTCACCT 	8
-----------------------------------------------------------------------GATCATGTGGCAGTTTCACCT 	22
-----------------------------------------------------------------------GATCATGTGGCAGTTTCACC 	4
-----------------------------------------------------------------------GATCATGTGGCAGTTTCAC 	4
-----------------------------------------------------------------------GATCATGTGGCAGTTTCACC 	4
------------------------------------------------------------------------ATCATGTGGCAGTTTCACC 	1
------------------------------------------------------------------------ATCATGTGGCAGTTTCACCT 	1
------------------------------------------------------------------------ATCATGTGGCAGTTTCACC 	1
------------------------------------------------------------------------ATCATGTGGCAGTTTCACC 	1
-------------------------------------------------------------------------TCATGTGGCAGTTTCACCTAG 	2
----------------------------------------------------------------------------TGTGGCAGTTTCACCTAGTAG 	15
----------------------------------------------------------------------------TGTGGCAGTTTCACCTAGTAGT 	1
----------------------------------------------------------------------------------------ACCTAGTAGTTGCTGGCCGC 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Glycine max GSM852280 TGAAGCTGCCAGCATGATCTTA AGATCATGTGGCAGTTTCACC up 2 1


Secondary structure

TATCTGTCTACCATCATGCACCACTACCAGTTGAAGCTGCCAGCATGATCTTAACTTCCCTCACTTGCTGTGGAAAGATCAGATCATGTGGCAGTTTCACCTAGTAGTTGTTGGCCGCATGAACCCTAG
------------------------TACCAGTTGAAGCTGCCAGC 	2
-------------------------ACCAGTTGAAGCTGCCAGCATGA 	3
-------------------------------TGAAGCTGCCAGCATGATCTTAAC 	26
-------------------------------TGAAGCTGCCAGCATGATCTTA 	5464
-------------------------------TGAAGCTGCCAGCATGATCTTAA 	5
--------------------------------GAAGCTGCCAGCATGATCTT 	1
--------------------------------GAAGCTGCCAGCATGATCTTA 	3
--------------------------------GAAGCTGCCAGCATGATCTTA 	3
--------------------------------GAAGCTGCCAGCATGATCTT 	1
--------------------------------GAAGCTGCCAGCATGATCT 	1
---------------------------------AAGCTGCCAGCATGATCTT 	4
---------------------------------AAGCTGCCAGCATGATCTTA 	1
---------------------------------AAGCTGCCAGCATGATCTTA 	1
----------------------------------------------------------------------TGGAAAGATCAGATCATGTGGCA 	4
-----------------------------------------------------------------------------ATCAGATCATGTGGCAGTTTCACC 	286
------------------------------------------------------------------------------TCAGATCATGTGGCAGTTTCACC 	1
------------------------------------------------------------------------------TCAGATCATGTGGCAGTTTCACC 	1
-------------------------------------------------------------------------------CAGATCATGTGGCAGTTTCACC 	3
-------------------------------------------------------------------------------CAGATCATGTGGCAGTTTCACCT 	1
--------------------------------------------------------------------------------AGATCATGTGGCAGTTTCACC 	1326
--------------------------------------------------------------------------------AGATCATGTGGCAGTTTCAC 	32
--------------------------------------------------------------------------------AGATCATGTGGCAGTTTCACCT 	8
---------------------------------------------------------------------------------GATCATGTGGCAGTTTCACCT 	22
---------------------------------------------------------------------------------GATCATGTGGCAGTTTCACC 	4
---------------------------------------------------------------------------------GATCATGTGGCAGTTTCAC 	4
---------------------------------------------------------------------------------GATCATGTGGCAGTTTCACC 	4
----------------------------------------------------------------------------------ATCATGTGGCAGTTTCACC 	1
----------------------------------------------------------------------------------ATCATGTGGCAGTTTCACCT 	1
----------------------------------------------------------------------------------ATCATGTGGCAGTTTCACC 	1
----------------------------------------------------------------------------------ATCATGTGGCAGTTTCACC 	1
-----------------------------------------------------------------------------------TCATGTGGCAGTTTCACCTAG 	2
--------------------------------------------------------------------------------------TGTGGCAGTTTCACCTAGTAG 	15
--------------------------------------------------------------------------------------TGTGGCAGTTTCACCTAGTAGT 	1


Overlaps with: MNEST040446
Overlaps with miRBase pre-miRNAs: gma-MIR167f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Glycine max GSM543394 TGAAGCTGCCAGCATGATCTT GATCATGTGGCAGTTTCACC up 1 1


Secondary structure

CCATCATGCACCACTACCAGTTGAAGCTGCCAGCATGATCTTAACTTCCCTCACTTGCCGTGGAAAGATCAGATCATGTGGCAGTTTCACCTAGTAGTTGCTGGCCGCA
--------------------TTGAAGCTGCCAGCATGATCTTA 	21
--------------------TTGAAGCTGCCAGCATGATCTT 	2749
--------------------TTGAAGCTGCCAGCATGATCT 	204
--------------------TTGAAGCTGCCAGCATGATC 	11
---------------------TGAAGCTGCCAGCATGATCTTAAC 	11
---------------------TGAAGCTGCCAGCATGATCTTAA 	57
---------------------TGAAGCTGCCAGCATGATCTTA 	182394
---------------------TGAAGCTGCCAGCATGATCTT 	216047
---------------------TGAAGCTGCCAGCATGATCT 	2611
---------------------TGAAGCTGCCAGCATGATC 	1007
----------------------GAAGCTGCCAGCATGATCTTA 	595
----------------------GAAGCTGCCAGCATGATCTT 	872
----------------------GAAGCTGCCAGCATGATCT 	23
-----------------------AAGCTGCCAGCATGATCTTA 	24
-----------------------AAGCTGCCAGCATGATCTT 	26
-------------------------------------------------------------------ATCAGATCATGTGGCAGTTTCACC 	17
----------------------------------------------------------------------AGATCATGTGGCAGTTTCACC 	42
-----------------------------------------------------------------------GATCATGTGGCAGTTTCACC 	17



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Glycine max GSM543394 TGAAGCTGCCAGCATGATCTT GATCATGTGGCAGTTTCACC up 1 1


Secondary structure

TATCTGTCTACCATCATGCACCACTACCAGTTGAAGCTGCCAGCATGATCTTAACTTCCCTCACTTGCTGTGGAAAGATCAGATCATGTGGCAGTTTCACCTAGTAGTTGTTGGCCGCATGAACCCTAG
------------------------------TTGAAGCTGCCAGCATGATCTTA 	21
------------------------------TTGAAGCTGCCAGCATGATCTT 	2749
------------------------------TTGAAGCTGCCAGCATGATCT 	204
------------------------------TTGAAGCTGCCAGCATGATC 	11
-------------------------------TGAAGCTGCCAGCATGATCTTAAC 	11
-------------------------------TGAAGCTGCCAGCATGATCTTAA 	57
-------------------------------TGAAGCTGCCAGCATGATCTTA 	182394
-------------------------------TGAAGCTGCCAGCATGATCTT 	216047
-------------------------------TGAAGCTGCCAGCATGATCT 	2611
-------------------------------TGAAGCTGCCAGCATGATC 	1007
--------------------------------GAAGCTGCCAGCATGATCTTA 	595
--------------------------------GAAGCTGCCAGCATGATCTT 	872
--------------------------------GAAGCTGCCAGCATGATCT 	23
---------------------------------AAGCTGCCAGCATGATCTTA 	24
---------------------------------AAGCTGCCAGCATGATCTT 	26
-----------------------------------------------------------------------------ATCAGATCATGTGGCAGTTTCACC 	17
--------------------------------------------------------------------------------AGATCATGTGGCAGTTTCACC 	42
---------------------------------------------------------------------------------GATCATGTGGCAGTTTCACC 	17


Overlaps with: MNEST040446
Overlaps with miRBase pre-miRNAs: gma-MIR167f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Glycine max GSM543393 TGAAGCTGCCAGCATGATCTT GATCATGTGGCAGTTTCACC up 1 1


Secondary structure

CCATCATGCACCACTACCAGTTGAAGCTGCCAGCATGATCTTAACTTCCCTCACTTGCCGTGGAAAGATCAGATCATGTGGCAGTTTCACCTAGTAGTTGCTGGCCGCA
--------------------TTGAAGCTGCCAGCATGATCTTA 	9
--------------------TTGAAGCTGCCAGCATGATCTT 	1843
--------------------TTGAAGCTGCCAGCATGATCT 	116
--------------------TTGAAGCTGCCAGCATGATC 	8
---------------------TGAAGCTGCCAGCATGATCTTAACT 	17
---------------------TGAAGCTGCCAGCATGATCTTAAC 	14
---------------------TGAAGCTGCCAGCATGATCTTAA 	71
---------------------TGAAGCTGCCAGCATGATCTTA 	119494
---------------------TGAAGCTGCCAGCATGATCTT 	162320
---------------------TGAAGCTGCCAGCATGATCT 	1618
---------------------TGAAGCTGCCAGCATGATC 	623
----------------------GAAGCTGCCAGCATGATCTTA 	349
----------------------GAAGCTGCCAGCATGATCTT 	560
----------------------GAAGCTGCCAGCATGATCT 	7
-----------------------AAGCTGCCAGCATGATCTTA 	13
-----------------------AAGCTGCCAGCATGATCTT 	14
-------------------------------------------------------------------ATCAGATCATGTGGCAGTTTCACC 	37
--------------------------------------------------------------------TCAGATCATGTGGCAGTTTCACC 	29
---------------------------------------------------------------------CAGATCATGTGGCAGTTTCACC 	14
----------------------------------------------------------------------AGATCATGTGGCAGTTTCACC 	97
-----------------------------------------------------------------------GATCATGTGGCAGTTTCACC 	32
------------------------------------------------------------------------ATCATGTGGCAGTTTCACCT 	6



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Glycine max GSM543393 TGAAGCTGCCAGCATGATCTT GATCATGTGGCAGTTTCACC up 1 1


Secondary structure

TATCTGTCTACCATCATGCACCACTACCAGTTGAAGCTGCCAGCATGATCTTAACTTCCCTCACTTGCTGTGGAAAGATCAGATCATGTGGCAGTTTCACCTAGTAGTTGTTGGCCGCATGAACCCTAG
------------------------------TTGAAGCTGCCAGCATGATCTTA 	9
------------------------------TTGAAGCTGCCAGCATGATCTT 	1843
------------------------------TTGAAGCTGCCAGCATGATCT 	116
------------------------------TTGAAGCTGCCAGCATGATC 	8
-------------------------------TGAAGCTGCCAGCATGATCTTAACT 	17
-------------------------------TGAAGCTGCCAGCATGATCTTAAC 	14
-------------------------------TGAAGCTGCCAGCATGATCTTAA 	71
-------------------------------TGAAGCTGCCAGCATGATCTTA 	119494
-------------------------------TGAAGCTGCCAGCATGATCTT 	162320
-------------------------------TGAAGCTGCCAGCATGATCT 	1618
-------------------------------TGAAGCTGCCAGCATGATC 	623
--------------------------------GAAGCTGCCAGCATGATCTTA 	349
--------------------------------GAAGCTGCCAGCATGATCTT 	560
--------------------------------GAAGCTGCCAGCATGATCT 	7
---------------------------------AAGCTGCCAGCATGATCTTA 	13
---------------------------------AAGCTGCCAGCATGATCTT 	14
-----------------------------------------------------------------------------ATCAGATCATGTGGCAGTTTCACC 	37
------------------------------------------------------------------------------TCAGATCATGTGGCAGTTTCACC 	29
-------------------------------------------------------------------------------CAGATCATGTGGCAGTTTCACC 	14
--------------------------------------------------------------------------------AGATCATGTGGCAGTTTCACC 	97
---------------------------------------------------------------------------------GATCATGTGGCAGTTTCACC 	32
----------------------------------------------------------------------------------ATCATGTGGCAGTTTCACCT 	6


Overlaps with: MNEST040446
Overlaps with miRBase pre-miRNAs: gma-MIR167f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Glycine max GSM543395 TGAAGCTGCCAGCATGATCTT GATCATGTGGCAGTTTCACC up 1 1


Secondary structure

CCATCATGCACCACTACCAGTTGAAGCTGCCAGCATGATCTTAACTTCCCTCACTTGCCGTGGAAAGATCAGATCATGTGGCAGTTTCACCTAGTAGTTGCTGGCCGCA
--------------------TTGAAGCTGCCAGCATGATCTT 	56
--------------------TTGAAGCTGCCAGCATGATCT 	9
---------------------TGAAGCTGCCAGCATGATCTTA 	3750
---------------------TGAAGCTGCCAGCATGATCTT 	4622
---------------------TGAAGCTGCCAGCATGATCT 	297
---------------------TGAAGCTGCCAGCATGATC 	128
-------------------------------------------------------------------ATCAGATCATGTGGCAGTTTCACC 	11
----------------------------------------------------------------------AGATCATGTGGCAGTTTCACC 	27
-----------------------------------------------------------------------GATCATGTGGCAGTTTCACC 	6



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Glycine max GSM543395 TGAAGCTGCCAGCATGATCTT GATCATGTGGCAGTTTCACC up 1 1


Secondary structure

TATCTGTCTACCATCATGCACCACTACCAGTTGAAGCTGCCAGCATGATCTTAACTTCCCTCACTTGCTGTGGAAAGATCAGATCATGTGGCAGTTTCACCTAGTAGTTGTTGGCCGCATGAACCCTAG
------------------------------TTGAAGCTGCCAGCATGATCTT 	56
------------------------------TTGAAGCTGCCAGCATGATCT 	9
-------------------------------TGAAGCTGCCAGCATGATCTTA 	3750
-------------------------------TGAAGCTGCCAGCATGATCTT 	4622
-------------------------------TGAAGCTGCCAGCATGATCT 	297
-------------------------------TGAAGCTGCCAGCATGATC 	128
-----------------------------------------------------------------------------ATCAGATCATGTGGCAGTTTCACC 	11
--------------------------------------------------------------------------------AGATCATGTGGCAGTTTCACC 	27
---------------------------------------------------------------------------------GATCATGTGGCAGTTTCACC 	6


Overlaps with: MNEST040446
Overlaps with miRBase pre-miRNAs: gma-MIR167f
HuntMi prediction: true miRNA