miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TGAAGTGTTTGGGGGAACTC

selected species: Brachypodium distachyon

28 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Brachypodium distachyon	GSM506620-12051	TGAAGTGTTTGGGGGAACTC	GTTTCCCGCAAGCACTTCACG	down	0	1

Secondary structure

CCGGGGACAAACCATGTTTGGTATTCTCATGAGTTTCCCGCAAGCACTTCACGAGGCCGTTTTCTGAGGGCTACTGTGAAGTGTTTGGGGGAACTCTTGGTCTCACCAAGCTTTCACAATTGAAA
---------------------------------------------------------CGTTTTCTGAGGGCTACTGTGAAG 	1
-----------------------------------------------------------------------TACTGTGAAGTGTTTGGGGGAACT 	1
---------------------------------------------------------------------------GTGAAGTGTTTGGGGGAACTC 	3
----------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTCTTGG 	1
----------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTCT 	2
----------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	355
----------------------------------------------------------------------------TGAAGTGTTTGGGGGAACT 	1
------------------------------------------------------------------------------AAGTGTTTGGGGGAACTCTTGGTC 	1
-------------------------------------------------------------------------------AGTGTTTGGGGGAACTCTTGGTCT 	1
-------------------------------------------------------------------------------AGTGTTTGGGGGAACTCTTGGTC 	1

Overlaps with: MNEST041786
Overlaps with miRBase pre-miRNAs: bdi-MIR395j
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Brachypodium distachyon	GSM506620-12051	TGAAGTGTTTGGGGGAACTC	GTTCCCTGCAAGCACTTCACG	down	0	1

Secondary structure

CGGGAAGCGGACCACGTTTGGTATTACCATGAGTTCCCTGCAAGCACTTCACGAGGCCGTTTTCTGAGGGCTACTGTGAAGTGTTTGGGGGAACTCTTGGTCTCACCAAGCTTTTACAATTGAAA
----------ACCACGTTTGGTATTACCATGA 	1
-----------------TTGGTATTACCATGAGTTCCCTGC 	1
---------------------------------------------------------CGTTTTCTGAGGGCTACTGTGAAG 	1
-----------------------------------------------------------------------TACTGTGAAGTGTTTGGGGGAACT 	1
---------------------------------------------------------------------------GTGAAGTGTTTGGGGGAACTC 	3
----------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTCTTGG 	1
----------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTCT 	2
----------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	355
----------------------------------------------------------------------------TGAAGTGTTTGGGGGAACT 	1
------------------------------------------------------------------------------AAGTGTTTGGGGGAACTCTTGGTC 	1
-------------------------------------------------------------------------------AGTGTTTGGGGGAACTCTTGGTCT 	1
-------------------------------------------------------------------------------AGTGTTTGGGGGAACTCTTGGTC 	1

Overlaps with: MNEST041784
Overlaps with miRBase pre-miRNAs: bdi-MIR395h
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Brachypodium distachyon	GSM506620-12051	TGAAGTGTTTGGGGGAACTC	GTTCCCTGCAAGCACTTCACG	down	0	1

Secondary structure

ACCATGTTTGGTATTATCATGAGTTCCCTGCAAGCACTTCACGAGGCACTATCCCAAGGGCTACTGTGAAGTGTTTGGGGGAACTCTTGGTGTCACCAAGCTTTC
-------------------------------------------------------------TACTGTGAAGTGTTTGGGGGAACT 	1
-----------------------------------------------------------------GTGAAGTGTTTGGGGGAACTC 	3
------------------------------------------------------------------TGAAGTGTTTGGGGGAACTCTTGG 	1
------------------------------------------------------------------TGAAGTGTTTGGGGGAACTCT 	2
------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	355
------------------------------------------------------------------TGAAGTGTTTGGGGGAACT 	1
---------------------------------------------------------------------AGTGTTTGGGGGAACTCTTGGTGT 	5
----------------------------------------------------------------------------GGGGGAACTCTTGGTGTCACCAAGC 	1

Overlaps with: MNEST041788
Overlaps with miRBase pre-miRNAs: bdi-MIR395l
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Brachypodium distachyon	GSM506620-12051	TGAAGTGTTTGGGGGAACTC	GTTCCCTGCAAGCACTTCACC	down	0	1

Secondary structure

ACTATGTTTGGTATTACCATGAGTTCCCTGCAAGCACTTCACCATGCACTACCCCAAGGGCTATTGTGAAGTGTTTGGGGGAACTCTTGGTGTCACCAAGCTTTT
-------TTGGTATTACCATGAGTTCCCTGC 	1
----------------------GTTCCCTGCAAGCACTTCACC 	1
------------------------------------------------CTACCCCAAGGGCTATTGTGAAGT 	1
--------------------------------------------------ACCCCAAGGGCTATTGTGAAGTGT 	1
-----------------------------------------------------------------GTGAAGTGTTTGGGGGAACTC 	3
------------------------------------------------------------------TGAAGTGTTTGGGGGAACTCTTGG 	1
------------------------------------------------------------------TGAAGTGTTTGGGGGAACTCT 	2
------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	355
------------------------------------------------------------------TGAAGTGTTTGGGGGAACT 	1
---------------------------------------------------------------------AGTGTTTGGGGGAACTCTTGGTGT 	5
----------------------------------------------------------------------------GGGGGAACTCTTGGTGTCACCAAGC 	1

Overlaps with: MNEST041790
Overlaps with miRBase pre-miRNAs: bdi-MIR395n
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Brachypodium distachyon	GSM506620-12051	TGAAGTGTTTGGGGGAACTC	GTTCCCTGCAAGCACTTCATG	down	0	1

Secondary structure

ACCACGTTTGGTACTACCATGAGTTCCCTGCAAGCACTTCATGAGGCCCAATTCTGAGGGCTACTGTGAAGTGTTTGGGGGAACTCTTGGTGTTACCAAGCTTTT
ACCACGTTTGGTACTACCATGA 	2
-----------------------------------------------CCAATTCTGAGGGCTACTGTGAAG 	1
-------------------------------------------------------------TACTGTGAAGTGTTTGGGGGAACT 	1
-----------------------------------------------------------------GTGAAGTGTTTGGGGGAACTC 	3
------------------------------------------------------------------TGAAGTGTTTGGGGGAACTCTTGG 	1
------------------------------------------------------------------TGAAGTGTTTGGGGGAACTCT 	2
------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	355
------------------------------------------------------------------TGAAGTGTTTGGGGGAACT 	1
---------------------------------------------------------------------AGTGTTTGGGGGAACTCTTGGTGT 	5
---------------------------------------------------------------------------TGGGGGAACTCTTGGTGTTAC 	3
---------------------------------------------------------------------------TGGGGGAACTCTTGGTGTTA 	1

Overlaps with: MNEST041787
Overlaps with miRBase pre-miRNAs: bdi-MIR395k
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Brachypodium distachyon	GSM506620-12051	TGAAGTGTTTGGGGGAACTC	GTTCCCTGCAAGCACTTCATG	down	0	1

Secondary structure

ACCACGTTTGGTAATACCATGAGTTCCCTGCAAGCACTTCATGAGGCCTAATTCTAAGGGCTACTGTGAAGTGTTTGGGGGAACTCTTGGTGTTACCAAGCTTTT
-------TTGGTAATACCATGAGTTCCCTGC 	1
-------------------------------------------------------------TACTGTGAAGTGTTTGGGGGAACT 	1
-----------------------------------------------------------------GTGAAGTGTTTGGGGGAACTC 	3
------------------------------------------------------------------TGAAGTGTTTGGGGGAACTCTTGG 	1
------------------------------------------------------------------TGAAGTGTTTGGGGGAACTCT 	2
------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	355
------------------------------------------------------------------TGAAGTGTTTGGGGGAACT 	1
---------------------------------------------------------------------AGTGTTTGGGGGAACTCTTGGTGT 	5
---------------------------------------------------------------------------TGGGGGAACTCTTGGTGTTAC 	3
---------------------------------------------------------------------------TGGGGGAACTCTTGGTGTTA 	1

Overlaps with: MNEST041779
Overlaps with miRBase pre-miRNAs: bdi-MIR395c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Brachypodium distachyon	GSM506620-12051	TGAAGTGTTTGGGGGAACTC	GTTCCCTTCAAACACTTTACG	down	0	1

Secondary structure

ATGGGAAAGAATTGAGTTTGGTGTCCCCGGGAGTTCCCTTCAAACACTTTACGAAGCATCTTTCTAAGACTATTTGTGAAGTGTTTGGGGGAACTCTCGGTGTCACCAAGCATTTTGTAGATAAT
ATGGGAAAGAATTGAGTTTGGTGT 	1
-TGGGAAAGAATTGAGTTTGGTGTC 	1
-----------------------------------------------------------CTTTCTAAGACTATTTGTGAAGTG 	1
------------------------------------------------------------------AGACTATTTGTGAAGTGTTTGG 	1
---------------------------------------------------------------------------GTGAAGTGTTTGGGGGAACTC 	3
----------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTCT 	2
----------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	355
----------------------------------------------------------------------------TGAAGTGTTTGGGGGAACT 	1
-------------------------------------------------------------------------------AGTGTTTGGGGGAACTCTCGGTGT 	1
--------------------------------------------------------------------------------GTGTTTGGGGGAACTCTCGGTGTC 	1
-----------------------------------------------------------------------------------TTTGGGGGAACTCTCGGTGTCA 	2
------------------------------------------------------------------------------------TTGGGGGAACTCTCGGTGTCA 	1
-------------------------------------------------------------------------------------TGGGGGAACTCTCGGTGTCACCAA 	2
-------------------------------------------------------------------------------------TGGGGGAACTCTCGGTGTCACCA 	1

Overlaps with: MNEST041782
Overlaps with miRBase pre-miRNAs: bdi-MIR395f
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Brachypodium distachyon	GSM506620-12051	TGAAGTGTTTGGGGGAACTC	GTTCTCCTCAAATCACTTCAGT	down	0	2

Secondary structure

TAGGCTCCTAGCTTGGTTGGTTGTCACCTGGAGTTCTCCTCAAATCACTTCAGTAGCTAGCTAGCTTGTGCCTCCTTGTTGCATTGCCACTGTTTTATAAGTGTGCTTGGGGCCAGAGAGCTGTGCACAGTGAAGTGTTTGGGGGAACTCTGGGTGGCAACCAGCATTTTCGGTAGGTT
--------------------------------GTTCTCCTCAAATCACTTCAGT 	7
------------------------------------------------------------------------------------------------------------------------CTGTGCACAGTGAAGTGTTTGGGG 	1
---------------------------------------------------------------------------------------------------------------------------------GTGAAGTGTTTGGGGGAACTC 	3
----------------------------------------------------------------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTCT 	2
----------------------------------------------------------------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	355
----------------------------------------------------------------------------------------------------------------------------------TGAAGTGTTTGGGGGAACT 	1
------------------------------------------------------------------------------------------------------------------------------------------------------TGGGTGGCAACCAGCATTTTCGGT 	1

Overlaps with: MNEST041781
Overlaps with miRBase pre-miRNAs: bdi-MIR395e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Brachypodium distachyon	GSM506620-12051	TGAAGTGTTTGGGGGAACTC	GTTCCTTGCAAGCACTTCATG	down	0	1

Secondary structure

CCAGCGGCAGACCATGTTTGGAATTATCATGAGTTCCTTGCAAGCACTTCATGAGGCACTATCCCAAGGGCTACTATGAAGTGTTTGGGGGAACTCTTGATATCACCAAGCTTTCATAAACAAAA
----------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTCT 	2
----------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	355
----------------------------------------------------------------------------TGAAGTGTTTGGGGGAACT 	1
------------------------------------------------------------------------------------TTGGGGGAACTCTTGATATCACC 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Brachypodium distachyon	GSM506620-12051	TGAAGTGTTTGGGGGAACTC	GTTTCCTGCAAACACTTCACG	down	0	1

Secondary structure

ACAACGTTTGGTGTTACCAGGAGTTTCCTGCAAACACTTCACGAGTGCCTATTTTAATGGGTTGTTGTGAAGTGTTTGGGGGAACTCTTGATGTCACCAAGCTTCT
-CAACGTTTGGTGTTACCAGGA 	1
-----------------------------------------------CCTATTTTAATGGGTTGTTGTGAA 	2
-----------------------------------------------CCTATTTTAATGGGTTGTTGTGA 	1
------------------------------------------------CTATTTTAATGGGTTGTTGTGAA 	1
-----------------------------------------------------TTAATGGGTTGTTGTGAAGTGTTT 	1
---------------------------------------------------------TGGGTTGTTGTGAAGTGTTTGGGG 	1
------------------------------------------------------------------GTGAAGTGTTTGGGGGAACTC 	3
-------------------------------------------------------------------TGAAGTGTTTGGGGGAACTCT 	2
-------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	355
-------------------------------------------------------------------TGAAGTGTTTGGGGGAACT 	1
--------------------------------------------------------------------------TTTGGGGGAACTCTTGATGTC 	2
---------------------------------------------------------------------------TTGGGGGAACTCTTGATGTCA 	3
----------------------------------------------------------------------------TGGGGGAACTCTTGATGTC 	1

Overlaps with: MNEST041783
Overlaps with miRBase pre-miRNAs: bdi-MIR395g
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Brachypodium distachyon	GSM506620-12051	TGAAGTGTTTGGGGGAACTC	GTTCTCCTCAAATCACTTCAGT	down	0	2

Secondary structure

CGCAGGAGATGAATGGTTGGTTGTCAACTGGAGTTCTCCTCAAATCACTTCAGTAGCTAGCTAGCTAGCTTGTGCCTCATTGTTTCATTGCCGCTGTTTATAAGTGTGCATGGAGCTGGAGAGCCGTGCACAGTGAAGTGTTTGGGGGAACTCCGGGTGGCAACCAACAATACTGATATCAC
--------------------------------GTTCTCCTCAAATCACTTCAGT 	7
------------------------------------------------------------------------------------------------------------------------------------GTGAAGTGTTTGGGGGAACTC 	3
-------------------------------------------------------------------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTCC 	1
-------------------------------------------------------------------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	355
-------------------------------------------------------------------------------------------------------------------------------------TGAAGTGTTTGGGGGAACT 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Brachypodium distachyon	GSM506620-12051	TGAAGTGTTTGGGGGAACTC	GTTCCTTTGCAAGCATTTCACG	down	0	2

Secondary structure

ACCATTTTTGGTATTACCATGAGTTCCTTTGCAAGCATTTCACGTACGAGGCACTATCCCAAGGGCTATTGTGAAGTGTTTGGGGGAACTCTTGGTGTCACCAAGATTTC
----------------------------------------------------------------------GTGAAGTGTTTGGGGGAACTC 	3
-----------------------------------------------------------------------TGAAGTGTTTGGGGGAACTCTTGG 	1
-----------------------------------------------------------------------TGAAGTGTTTGGGGGAACTCT 	2
-----------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	355
-----------------------------------------------------------------------TGAAGTGTTTGGGGGAACT 	1
--------------------------------------------------------------------------AGTGTTTGGGGGAACTCTTGGTGT 	5

Overlaps with: MNEST041789
Overlaps with miRBase pre-miRNAs: bdi-MIR395m
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Brachypodium distachyon	GSM506620-12051	TGAAGTGTTTGGGGGAACTC	GTTCCCTGCAAGCACTTCACG	down	0	1

Secondary structure

CCGGCATCGGACCACGTTTGGTATTACCATGAGTTCCCTGCAAGCACTTCACGAGGCCCAATTATGATGGCTACTGTGAAGTGTTTGGGGGAACTCTTGGTGTCACCAAGCTTACACAAATAAAA
----------ACCACGTTTGGTATTACCATGA 	1
-----------------TTGGTATTACCATGAGTTCCCTGC 	1
-----------------------------------------------------------------------TACTGTGAAGTGTTTGGGGGAACT 	1
---------------------------------------------------------------------------GTGAAGTGTTTGGGGGAACTC 	3
----------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTCTTGG 	1
----------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTCT 	2
----------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	355
----------------------------------------------------------------------------TGAAGTGTTTGGGGGAACT 	1
-------------------------------------------------------------------------------AGTGTTTGGGGGAACTCTTGGTGT 	5
--------------------------------------------------------------------------------------GGGGGAACTCTTGGTGTCACCAAGC 	1

Overlaps with: MNEST041778
Overlaps with miRBase pre-miRNAs: bdi-MIR395b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
14	Brachypodium distachyon	GSM506620-12051	TGAAGTGTTTGGGGGAACTC	ATTCCCTACAAGCACTTCACA	down	1	1

Secondary structure

TTGATGGCAGATCATGTTTGGTATTATCATGAATTCCCTACAAGCACTTCACAAGAAGCTATTCCTAGGGCTATTGTGAAGTGTTTGGGGGAACTCTTGATGTCACCAAGCTTCCATTTGTAGAT
-------------------------------------------------------AAGCTATTCCTAGGGCTATTGTGA 	2
--------------------------------------------------------AGCTATTCCTAGGGCTATTGTGAA 	1
---------------------------------------------------------------------------GTGAAGTGTTTGGGGGAACTC 	3
----------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTCT 	2
----------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	355
----------------------------------------------------------------------------TGAAGTGTTTGGGGGAACT 	1
-----------------------------------------------------------------------------------TTTGGGGGAACTCTTGATGTC 	2
------------------------------------------------------------------------------------TTGGGGGAACTCTTGATGTCA 	3
-------------------------------------------------------------------------------------TGGGGGAACTCTTGATGTC 	1

Overlaps with: MNEST041785
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
15	Brachypodium distachyon	GSM506621-23192	TGAAGTGTTTGGGGGAACTC	GTTCCCTTCAAACACTTTACG	down	0	1

Secondary structure

ATGGGAAAGAATTGAGTTTGGTGTCCCCGGGAGTTCCCTTCAAACACTTTACGAAGCATCTTTCTAAGACTATTTGTGAAGTGTTTGGGGGAACTCTCGGTGTCACCAAGCATTTTGTAGATAAT
----------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	14
-------------------------------------------------------------------------------AGTGTTTGGGGGAACTCTCGGTGT 	1
----------------------------------------------------------------------------------GTTTGGGGGAACTCTCGGTGTCAC 	1
-------------------------------------------------------------------------------------TGGGGGAACTCTCGGTGTCACCAA 	3
--------------------------------------------------------------------------------------GGGGGAACTCTCGGTGTCACCAAG 	1
---------------------------------------------------------------------------------------GGGGAACTCTCGGTGTCACCAAGC 	1
----------------------------------------------------------------------------------------------------TGTCACCAAGCATTTTGTAGATAA 	1

Overlaps with: MNEST041782
Overlaps with miRBase pre-miRNAs: bdi-MIR395f
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
16	Brachypodium distachyon	GSM506621-23192	TGAAGTGTTTGGGGGAACTC	GTTCTCCTCAAATCACTTCAGT	down	0	2

Secondary structure

TAGGCTCCTAGCTTGGTTGGTTGTCACCTGGAGTTCTCCTCAAATCACTTCAGTAGCTAGCTAGCTTGTGCCTCCTTGTTGCATTGCCACTGTTTTATAAGTGTGCTTGGGGCCAGAGAGCTGTGCACAGTGAAGTGTTTGGGGGAACTCTGGGTGGCAACCAGCATTTTCGGTAGGTT
----------------------------------------------------------------------------------------------------------TTGGGGCCAGAGAGCTGTGCACAG 	1
----------------------------------------------------------------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	14
--------------------------------------------------------------------------------------------------------------------------------------GTGTTTGGGGGAACTCTGGGTGGC 	1
---------------------------------------------------------------------------------------------------------------------------------------TGTTTGGGGGAACTCTGGGTGGC 	1
----------------------------------------------------------------------------------------------------------------------------------------GTTTGGGGGAACTCTGGGTGGCAA 	2
-----------------------------------------------------------------------------------------------------------------------------------------TTTGGGGGAACTCTGGGTGGCAAC 	1
-------------------------------------------------------------------------------------------------------------------------------------------TGGGGGAACTCTGGGTGGCAACCA 	1
--------------------------------------------------------------------------------------------------------------------------------------------GGGGGAACTCTGGGTGGCAACCAG 	2
---------------------------------------------------------------------------------------------------------------------------------------------GGGGAACTCTGGGTGGCAACCAG 	3
---------------------------------------------------------------------------------------------------------------------------------------------GGGGAACTCTGGGTGGCAACCAGC 	6
-----------------------------------------------------------------------------------------------------------------------------------------------GGAACTCTGGGTGGCAACCAGCAT 	2
------------------------------------------------------------------------------------------------------------------------------------------------GAACTCTGGGTGGCAACCAGCATT 	1
-------------------------------------------------------------------------------------------------------------------------------------------------AACTCTGGGTGGCAACCAGCATT 	1

Overlaps with: MNEST041781
Overlaps with miRBase pre-miRNAs: bdi-MIR395e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
17	Brachypodium distachyon	GSM506621-23192	TGAAGTGTTTGGGGGAACTC	GTTCCTTGCAAGCACTTCATG	down	0	1

Secondary structure

CCAGCGGCAGACCATGTTTGGAATTATCATGAGTTCCTTGCAAGCACTTCATGAGGCACTATCCCAAGGGCTACTATGAAGTGTTTGGGGGAACTCTTGATATCACCAAGCTTTCATAAACAAAA
----------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	14

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
18	Brachypodium distachyon	GSM506621-23192	TGAAGTGTTTGGGGGAACTC	GTTTCCTGCAAACACTTCACG	down	0	1

Secondary structure

ACAACGTTTGGTGTTACCAGGAGTTTCCTGCAAACACTTCACGAGTGCCTATTTTAATGGGTTGTTGTGAAGTGTTTGGGGGAACTCTTGATGTCACCAAGCTTCT
------------------AGGAGTTTCCTGCAAACACTTCAC 	1
-------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	14

Overlaps with: MNEST041783
Overlaps with miRBase pre-miRNAs: bdi-MIR395g
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
19	Brachypodium distachyon	GSM506621-23192	TGAAGTGTTTGGGGGAACTC	GTTTCCCGCAAGCACTTCACG	down	0	1

Secondary structure

CCGGGGACAAACCATGTTTGGTATTCTCATGAGTTTCCCGCAAGCACTTCACGAGGCCGTTTTCTGAGGGCTACTGTGAAGTGTTTGGGGGAACTCTTGGTCTCACCAAGCTTTCACAATTGAAA
----------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	14
----------------------------------------------------------------------------------------------------TCTCACCAAGCTTTCACAATTGAA 	1

Overlaps with: MNEST041786
Overlaps with miRBase pre-miRNAs: bdi-MIR395j
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
20	Brachypodium distachyon	GSM506621-23192	TGAAGTGTTTGGGGGAACTC	GTTCCCTGCAAGCACTTCACG	down	0	1

Secondary structure

CGGGAAGCGGACCACGTTTGGTATTACCATGAGTTCCCTGCAAGCACTTCACGAGGCCGTTTTCTGAGGGCTACTGTGAAGTGTTTGGGGGAACTCTTGGTCTCACCAAGCTTTTACAATTGAAA
----AAGCGGACCACGTTTGGTATTACC 	1
----------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	14

Overlaps with: MNEST041784
Overlaps with miRBase pre-miRNAs: bdi-MIR395h
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
21	Brachypodium distachyon	GSM506621-23192	TGAAGTGTTTGGGGGAACTC	GTTCCCTGCAAGCACTTCACG	down	0	1

Secondary structure

ACCATGTTTGGTATTATCATGAGTTCCCTGCAAGCACTTCACGAGGCACTATCCCAAGGGCTACTGTGAAGTGTTTGGGGGAACTCTTGGTGTCACCAAGCTTTC
-----------------------------------------------ACTATCCCAAGGGCTACTGTGAA 	1
-------------------------------------------------------AAGGGCTACTGTGAAGTGTTTGGG 	1
------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	14

Overlaps with: MNEST041788
Overlaps with miRBase pre-miRNAs: bdi-MIR395l
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
22	Brachypodium distachyon	GSM506621-23192	TGAAGTGTTTGGGGGAACTC	GTTCCCTGCAAGCACTTCACC	down	0	1

Secondary structure

ACTATGTTTGGTATTACCATGAGTTCCCTGCAAGCACTTCACCATGCACTACCCCAAGGGCTATTGTGAAGTGTTTGGGGGAACTCTTGGTGTCACCAAGCTTTT
------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	14

Overlaps with: MNEST041790
Overlaps with miRBase pre-miRNAs: bdi-MIR395n
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
23	Brachypodium distachyon	GSM506621-23192	TGAAGTGTTTGGGGGAACTC	GTTCCCTGCAAGCACTTCATG	down	0	1

Secondary structure

ACCACGTTTGGTACTACCATGAGTTCCCTGCAAGCACTTCATGAGGCCCAATTCTGAGGGCTACTGTGAAGTGTTTGGGGGAACTCTTGGTGTTACCAAGCTTTT
-------------------TGAGTTCCCTGCAAGCACTTCATG 	1
------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	14

Overlaps with: MNEST041787
Overlaps with miRBase pre-miRNAs: bdi-MIR395k
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
24	Brachypodium distachyon	GSM506621-23192	TGAAGTGTTTGGGGGAACTC	GTTCCCTGCAAGCACTTCATG	down	0	1

Secondary structure

ACCACGTTTGGTAATACCATGAGTTCCCTGCAAGCACTTCATGAGGCCTAATTCTAAGGGCTACTGTGAAGTGTTTGGGGGAACTCTTGGTGTTACCAAGCTTTT
-------------------TGAGTTCCCTGCAAGCACTTCATG 	1
-------------------------------------------------------AAGGGCTACTGTGAAGTGTTTGGG 	1
------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	14

Overlaps with: MNEST041779
Overlaps with miRBase pre-miRNAs: bdi-MIR395c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
25	Brachypodium distachyon	GSM506621-23192	TGAAGTGTTTGGGGGAACTC	GTTCTCCTCAAATCACTTCAGT	down	0	2

Secondary structure

CGCAGGAGATGAATGGTTGGTTGTCAACTGGAGTTCTCCTCAAATCACTTCAGTAGCTAGCTAGCTAGCTTGTGCCTCATTGTTTCATTGCCGCTGTTTATAAGTGTGCATGGAGCTGGAGAGCCGTGCACAGTGAAGTGTTTGGGGGAACTCCGGGTGGCAACCAACAATACTGATATCAC
-------------------------------------------------------------------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	14
-----------------------------------------------------------------------------------------------------------------------------------------GTGTTTGGGGGAACTCCGGGTGGC 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
26	Brachypodium distachyon	GSM506621-23192	TGAAGTGTTTGGGGGAACTC	GTTCCTTTGCAAGCATTTCACG	down	0	2

Secondary structure

ACCATTTTTGGTATTACCATGAGTTCCTTTGCAAGCATTTCACGTACGAGGCACTATCCCAAGGGCTATTGTGAAGTGTTTGGGGGAACTCTTGGTGTCACCAAGATTTC
-----------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	14

Overlaps with: MNEST041789
Overlaps with miRBase pre-miRNAs: bdi-MIR395m
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
27	Brachypodium distachyon	GSM506621-23192	TGAAGTGTTTGGGGGAACTC	GTTCCCTGCAAGCACTTCACG	down	0	1

Secondary structure

CCGGCATCGGACCACGTTTGGTATTACCATGAGTTCCCTGCAAGCACTTCACGAGGCCCAATTATGATGGCTACTGTGAAGTGTTTGGGGGAACTCTTGGTGTCACCAAGCTTACACAAATAAAA
-----ATCGGACCACGTTTGGTATTACCA 	1
----------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	14

Overlaps with: MNEST041778
Overlaps with miRBase pre-miRNAs: bdi-MIR395b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
28	Brachypodium distachyon	GSM506621-23192	TGAAGTGTTTGGGGGAACTC	ATTCCCTACAAGCACTTCACA	down	1	1

Secondary structure

TTGATGGCAGATCATGTTTGGTATTATCATGAATTCCCTACAAGCACTTCACAAGAAGCTATTCCTAGGGCTATTGTGAAGTGTTTGGGGGAACTCTTGATGTCACCAAGCTTCCATTTGTAGAT
----------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	14

Overlaps with: MNEST041785
HuntMi prediction: true miRNA