miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGACAACGAGAGAGAGCACGC

selected species: Physcomitrella patens



36 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM115097 TGACAACGAGAGAGAGCACGC GTGCCCTCTACCGTTGTCGCC up 3 0


Secondary structure

ATAAACTGAAAGCTTGGAGGTGAAACGGTGGAGAACCTAGGTGACAACGAGAGAGAGCACGCTGGAATGCTTTTCATGCAATACGCTTGGATGTGTTCTAGCGTGCCCTCTACCGTTGTCGCCAAACATCTTCTCCATGACTTCTCCTCTCGTCTGTATTC
----------------------------------------GTGACAACGAGAGAGAGCACGC 	7
-----------------------------------------TGACAACGAGAGAGAGCACGCT 	28
-----------------------------------------TGACAACGAGAGAGAGCACG 	23
-----------------------------------------TGACAACGAGAGAGAGCACGC 	3674
------------------------------------------GACAACGAGAGAGAGCACGC 	6
------------------------------------------GACAACGAGAGAGAGCACG 	1
-----------------------------------------------------------------------------------CGCTTGGATGTGTTCTAGC 	1
------------------------------------------------------------------------------------------------------GTGCCCTCTACCGTTGTCGCC 	7
-------------------------------------------------------------------------------------------------------TGCCCTCTACCGTTGTCGC 	1


Overlaps with: MNEST039518 MNEST051420
Overlaps with miRBase pre-miRNAs: ppt-MIR535a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM115097 TGACAACGAGAGAGAGCACGC GTGCCCTTTCCCGTTGTCGCC up 2 0


Secondary structure

CCCATGGTAGAAGAAGAAGAAGAAGTGTCGGTGACCCTTAGTGACAACGAGAGAGAGCACGCTGGAATGCTTTCACGCAATAAGCCTGGATGTGTTCTTGCGTGCCCTTTCCCGTTGTCGCCAACTATCTTGTCGATGAGTTCTCTCCTCCTATGTTGCA
----------------------------------------GTGACAACGAGAGAGAGCACGC 	7
-----------------------------------------TGACAACGAGAGAGAGCACGCT 	28
-----------------------------------------TGACAACGAGAGAGAGCACG 	23
-----------------------------------------TGACAACGAGAGAGAGCACGC 	3674
------------------------------------------GACAACGAGAGAGAGCACGC 	6
------------------------------------------GACAACGAGAGAGAGCACG 	1
-----------------------------------------------------------------------------------------------------GTGCCCTTTCCCGTTGTCGCC 	12
-----------------------------------------------------------------------------------------------------GTGCCCTTTCCCGTTGTCGC 	3
------------------------------------------------------------------------------------------------------TGCCCTTTCCCGTTGTCGC 	1


Overlaps with: MNEST039520 MNEST051422
Overlaps with miRBase pre-miRNAs: ppt-MIR535c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM115097 TGACAACGAGAGAGAGCACGC GTGCCCTCTCCCGCTGTCGCC up 3 0


Secondary structure

ACGCATCTAGGTGACAACGAGAGAGAGCACGCTGGAATGCACTCTTGTAAGAAGCATGGGTATGTTCTTGTGTGCCCTCTCCCGCTGTCGCCAAGTTCTA
----------GTGACAACGAGAGAGAGCACGC 	7
-----------TGACAACGAGAGAGAGCACGCT 	28
-----------TGACAACGAGAGAGAGCACG 	23
-----------TGACAACGAGAGAGAGCACGC 	3674
------------GACAACGAGAGAGAGCACGC 	6
------------GACAACGAGAGAGAGCACG 	1
----------------------GAGAGCACGCTGGAATGCA 	1
------------------------------------------------------------TATGTTCTTGTGTGCCCTCTC 	1
-----------------------------------------------------------------------GTGCCCTCTCCCGCTGTCGCC 	7
------------------------------------------------------------------------TGCCCTCTCCCGCTGTCGCC 	1


Overlaps with: MNEST039519 MNEST051421
Overlaps with miRBase pre-miRNAs: ppt-MIR535b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Physcomitrella patens GSM115097 TGACAACGAGAGAGAGCACGC GTGCCCTCTCCCGTCGTCACC up 3 0


Secondary structure

GCGTAAGTGGGTGACAACGAGAGAGAGCACGCCGGAATGCGTTCATGCAGCGAGTGCCTGGAGGTGTTCGAGCGTGCCCTCTCCCGTCGTCACCAATCTTTT
----------GTGACAACGAGAGAGAGCACGC 	7
-----------TGACAACGAGAGAGAGCACG 	23
-----------TGACAACGAGAGAGAGCACGCC 	287
-----------TGACAACGAGAGAGAGCACGC 	3674
------------GACAACGAGAGAGAGCACGC 	6
------------GACAACGAGAGAGAGCACGCC 	1
------------GACAACGAGAGAGAGCACG 	1
--------------CAACGAGAGAGAGCACGCCGG 	1
----------------ACGAGAGAGAGCACGCCGGAA 	1
----------------ACGAGAGAGAGCACGCCGGA 	3
--------------------------------------------------------------------CGAGCGTGCCCTCTCCCGTCG 	5
-------------------------------------------------------------------------GTGCCCTCTCCCGTCGTCACC 	8
--------------------------------------------------------------------------TGCCCTCTCCCGTCGTCACC 	2


Overlaps with: MNEST039521 MNEST051423
Overlaps with miRBase pre-miRNAs: ppt-MIR535d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Physcomitrella patens GSM313212 TGACAACGAGAGAGAGCACGC GTGCCCTCTACCGTTGTCGCC up 3 0


Secondary structure

ATAAACTGAAAGCTTGGAGGTGAAACGGTGGAGAACCTAGGTGACAACGAGAGAGAGCACGCTGGAATGCTTTTCATGCAATACGCTTGGATGTGTTCTAGCGTGCCCTCTACCGTTGTCGCCAAACATCTTCTCCATGACTTCTCCTCTCGTCTGTATTC
----------------------------------------GTGACAACGAGAGAGAGCACGC 	1
-----------------------------------------TGACAACGAGAGAGAGCACGCT 	55
-----------------------------------------TGACAACGAGAGAGAGCACG 	43
-----------------------------------------TGACAACGAGAGAGAGCACGC 	1216
-----------------------------------------TGACAACGAGAGAGAGCAC 	19
------------------------------------------GACAACGAGAGAGAGCACGCT 	1
------------------------------------------GACAACGAGAGAGAGCACGC 	13
------------------------------------------GACAACGAGAGAGAGCACG 	2
-------------------------------------------ACAACGAGAGAGAGCACGC 	6
--------------------------------------------------------------TGGAATGCTTTTCATGCAAT 	1
--------------------------------------------------------------------------------------TTGGATGTGTTCTAGCGTGCCCT 	1
------------------------------------------------------------------------------------------------------GTGCCCTCTACCGTTGTCGC 	32
------------------------------------------------------------------------------------------------------GTGCCCTCTACCGTTGTCGCCA 	8
------------------------------------------------------------------------------------------------------GTGCCCTCTACCGTTGTCGCC 	80
------------------------------------------------------------------------------------------------------GTGCCCTCTACCGTTGTCG 	2
-------------------------------------------------------------------------------------------------------TGCCCTCTACCGTTGTCGCCA 	1
-------------------------------------------------------------------------------------------------------TGCCCTCTACCGTTGTCGC 	1
-------------------------------------------------------------------------------------------------------TGCCCTCTACCGTTGTCGCC 	1


Overlaps with: MNEST039518 MNEST051420
Overlaps with miRBase pre-miRNAs: ppt-MIR535a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Physcomitrella patens GSM313212 TGACAACGAGAGAGAGCACGC GTGCCCTTTCCCGTTGTCGCC up 2 0


Secondary structure

CCCATGGTAGAAGAAGAAGAAGAAGTGTCGGTGACCCTTAGTGACAACGAGAGAGAGCACGCTGGAATGCTTTCACGCAATAAGCCTGGATGTGTTCTTGCGTGCCCTTTCCCGTTGTCGCCAACTATCTTGTCGATGAGTTCTCTCCTCCTATGTTGCA
----------------------------------------GTGACAACGAGAGAGAGCACGC 	1
-----------------------------------------TGACAACGAGAGAGAGCACGCT 	55
-----------------------------------------TGACAACGAGAGAGAGCACG 	43
-----------------------------------------TGACAACGAGAGAGAGCACGC 	1216
-----------------------------------------TGACAACGAGAGAGAGCAC 	19
------------------------------------------GACAACGAGAGAGAGCACGCT 	1
------------------------------------------GACAACGAGAGAGAGCACGC 	13
------------------------------------------GACAACGAGAGAGAGCACG 	2
-------------------------------------------ACAACGAGAGAGAGCACGC 	6
-----------------------------------------------------------------------------------------------------GTGCCCTTTCCCGTTGTCGCCA 	1
-----------------------------------------------------------------------------------------------------GTGCCCTTTCCCGTTGTCGC 	2
-----------------------------------------------------------------------------------------------------GTGCCCTTTCCCGTTGTCGCC 	9


Overlaps with: MNEST039520 MNEST051422
Overlaps with miRBase pre-miRNAs: ppt-MIR535c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Physcomitrella patens GSM313212 TGACAACGAGAGAGAGCACGC GTGCCCTCTCCCGCTGTCGCC up 3 0


Secondary structure

ACGCATCTAGGTGACAACGAGAGAGAGCACGCTGGAATGCACTCTTGTAAGAAGCATGGGTATGTTCTTGTGTGCCCTCTCCCGCTGTCGCCAAGTTCTA
----------GTGACAACGAGAGAGAGCACGC 	1
-----------TGACAACGAGAGAGAGCACGCT 	55
-----------TGACAACGAGAGAGAGCACG 	43
-----------TGACAACGAGAGAGAGCACGC 	1216
-----------TGACAACGAGAGAGAGCAC 	19
------------GACAACGAGAGAGAGCACGCT 	1
------------GACAACGAGAGAGAGCACGC 	13
------------GACAACGAGAGAGAGCACG 	2
-------------ACAACGAGAGAGAGCACGC 	6
---------------------AGAGAGCACGCTGGAATGCA 	1
----------------------GAGAGCACGCTGGAATGCAC 	3
----------------------GAGAGCACGCTGGAATGCACT 	7
-----------------------AGAGCACGCTGGAATGCACTCTTG 	1
-----------------------AGAGCACGCTGGAATGCACTCTTGT 	2
-----------------------AGAGCACGCTGGAATGCACT 	1
--------------------------------------------------------TGGGTATGTTCTTGTGTGCCCTCT 	2
-----------------------------------------------------------------------GTGCCCTCTCCCGCTGTCGCC 	14
-----------------------------------------------------------------------GTGCCCTCTCCCGCTGTCGC 	15
------------------------------------------------------------------------TGCCCTCTCCCGCTGTCGCC 	1


Overlaps with: MNEST039519 MNEST051421
Overlaps with miRBase pre-miRNAs: ppt-MIR535b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Physcomitrella patens GSM313212 TGACAACGAGAGAGAGCACGC GTGCCCTCTCCCGTCGTCACC up 3 0


Secondary structure

GCGTAAGTGGGTGACAACGAGAGAGAGCACGCCGGAATGCGTTCATGCAGCGAGTGCCTGGAGGTGTTCGAGCGTGCCCTCTCCCGTCGTCACCAATCTTTT
----------GTGACAACGAGAGAGAGCACGC 	1
-----------TGACAACGAGAGAGAGCACGCC 	108
-----------TGACAACGAGAGAGAGCACG 	43
-----------TGACAACGAGAGAGAGCACGC 	1216
-----------TGACAACGAGAGAGAGCAC 	19
------------GACAACGAGAGAGAGCACGC 	13
------------GACAACGAGAGAGAGCACG 	2
-------------ACAACGAGAGAGAGCACGC 	6
----------------ACGAGAGAGAGCACGCCGGAA 	1
----------------ACGAGAGAGAGCACGCCGGA 	1
---------------------AGAGAGCACGCCGGAATGCGTTCA 	1
--------------------------------------------------------------------CGAGCGTGCCCTCTCCCGTCGT 	1
--------------------------------------------------------------------CGAGCGTGCCCTCTCCCGTCG 	1
-------------------------------------------------------------------------GTGCCCTCTCCCGTCGTCACC 	402
-------------------------------------------------------------------------GTGCCCTCTCCCGTCGTCAC 	40
-------------------------------------------------------------------------GTGCCCTCTCCCGTCGTCACCA 	6
-------------------------------------------------------------------------GTGCCCTCTCCCGTCGTCA 	9
--------------------------------------------------------------------------TGCCCTCTCCCGTCGTCACC 	8
--------------------------------------------------------------------------TGCCCTCTCCCGTCGTCAC 	2


Overlaps with: MNEST039521 MNEST051423
Overlaps with miRBase pre-miRNAs: ppt-MIR535d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Physcomitrella patens GSM115095 TGACAACGAGAGAGAGCACGC GTGCCCTCTACCGTTGTCGCC up 3 0


Secondary structure

ATAAACTGAAAGCTTGGAGGTGAAACGGTGGAGAACCTAGGTGACAACGAGAGAGAGCACGCTGGAATGCTTTTCATGCAATACGCTTGGATGTGTTCTAGCGTGCCCTCTACCGTTGTCGCCAAACATCTTCTCCATGACTTCTCCTCTCGTCTGTATTC
----------------------------------------GTGACAACGAGAGAGAGCACGC 	2
-----------------------------------------TGACAACGAGAGAGAGCACGCT 	2
-----------------------------------------TGACAACGAGAGAGAGCACG 	17
-----------------------------------------TGACAACGAGAGAGAGCACGC 	1037
-----------------------------------------TGACAACGAGAGAGAGCAC 	3
------------------------------------------GACAACGAGAGAGAGCACGC 	1
-----------------------------------------------------------CGCTGGAATGCTTTTCATGCA 	2
--------------------------------------------------------------TGGAATGCTTTTCATGCAA 	1
------------------------------------------------------------------------------------------------------GTGCCCTCTACCGTTGTCGCC 	4
------------------------------------------------------------------------------------------------------GTGCCCTCTACCGTTGTCGC 	1
-------------------------------------------------------------------------------------------------------TGCCCTCTACCGTTGTCGC 	1


Overlaps with: MNEST039518 MNEST051420
Overlaps with miRBase pre-miRNAs: ppt-MIR535a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Physcomitrella patens GSM115095 TGACAACGAGAGAGAGCACGC GTGCCCTTTCCCGTTGTCGCC up 2 0


Secondary structure

CCCATGGTAGAAGAAGAAGAAGAAGTGTCGGTGACCCTTAGTGACAACGAGAGAGAGCACGCTGGAATGCTTTCACGCAATAAGCCTGGATGTGTTCTTGCGTGCCCTTTCCCGTTGTCGCCAACTATCTTGTCGATGAGTTCTCTCCTCCTATGTTGCA
----------------------------------------GTGACAACGAGAGAGAGCACGC 	2
-----------------------------------------TGACAACGAGAGAGAGCACGCT 	2
-----------------------------------------TGACAACGAGAGAGAGCACG 	17
-----------------------------------------TGACAACGAGAGAGAGCACGC 	1037
-----------------------------------------TGACAACGAGAGAGAGCAC 	3
------------------------------------------GACAACGAGAGAGAGCACGC 	1
-----------------------------------------------------------------------------------------------------GTGCCCTTTCCCGTTGTCGCC 	1


Overlaps with: MNEST039520 MNEST051422
Overlaps with miRBase pre-miRNAs: ppt-MIR535c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Physcomitrella patens GSM115095 TGACAACGAGAGAGAGCACGC GTGCCCTCTCCCGCTGTCGCC up 3 0


Secondary structure

ACGCATCTAGGTGACAACGAGAGAGAGCACGCTGGAATGCACTCTTGTAAGAAGCATGGGTATGTTCTTGTGTGCCCTCTCCCGCTGTCGCCAAGTTCTA
----------GTGACAACGAGAGAGAGCACGC 	2
-----------TGACAACGAGAGAGAGCACGCT 	2
-----------TGACAACGAGAGAGAGCACG 	17
-----------TGACAACGAGAGAGAGCACGC 	1037
-----------TGACAACGAGAGAGAGCAC 	3
------------GACAACGAGAGAGAGCACGC 	1


Overlaps with: MNEST039519 MNEST051421
Overlaps with miRBase pre-miRNAs: ppt-MIR535b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Physcomitrella patens GSM115095 TGACAACGAGAGAGAGCACGC GTGCCCTCTCCCGTCGTCACC up 3 0


Secondary structure

GCGTAAGTGGGTGACAACGAGAGAGAGCACGCCGGAATGCGTTCATGCAGCGAGTGCCTGGAGGTGTTCGAGCGTGCCCTCTCCCGTCGTCACCAATCTTTT
----------GTGACAACGAGAGAGAGCACGC 	2
-----------TGACAACGAGAGAGAGCACG 	17
-----------TGACAACGAGAGAGAGCACGCC 	24
-----------TGACAACGAGAGAGAGCACGC 	1037
-----------TGACAACGAGAGAGAGCAC 	3
------------GACAACGAGAGAGAGCACGC 	1
----------------ACGAGAGAGAGCACGCCGGA 	2
-------------------------------------------------------------------------GTGCCCTCTCCCGTCGTCACC 	4
--------------------------------------------------------------------------TGCCCTCTCCCGTCGTCACC 	1


Overlaps with: MNEST039521 MNEST051423
Overlaps with miRBase pre-miRNAs: ppt-MIR535d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Physcomitrella patens GSM313213 TGACAACGAGAGAGAGCACGC GTGCCCTCTACCGTTGTCGCC up 3 0


Secondary structure

ATAAACTGAAAGCTTGGAGGTGAAACGGTGGAGAACCTAGGTGACAACGAGAGAGAGCACGCTGGAATGCTTTTCATGCAATACGCTTGGATGTGTTCTAGCGTGCCCTCTACCGTTGTCGCCAAACATCTTCTCCATGACTTCTCCTCTCGTCTGTATTC
-----------------AGGTGAAACGGTGGAGAACCTAG 	1
-----------------------------------------TGACAACGAGAGAGAGCACGCT 	70
-----------------------------------------TGACAACGAGAGAGAGCACG 	50
-----------------------------------------TGACAACGAGAGAGAGCACGC 	1367
-----------------------------------------TGACAACGAGAGAGAGCAC 	29
------------------------------------------GACAACGAGAGAGAGCACGCT 	1
------------------------------------------GACAACGAGAGAGAGCACGC 	15
------------------------------------------GACAACGAGAGAGAGCACG 	1
-------------------------------------------ACAACGAGAGAGAGCACGCT 	1
-------------------------------------------ACAACGAGAGAGAGCACGC 	1
----------------------------------------------ACGAGAGAGAGCACGCTGGAA 	1
-------------------------------------------------------------------------------AATACGCTTGGATGTGTTCTAGC 	1
-------------------------------------------------------------------------------------CTTGGATGTGTTCTAGCGTGCCCTC 	1
------------------------------------------------------------------------------------------------------GTGCCCTCTACCGTTGTCGC 	42
------------------------------------------------------------------------------------------------------GTGCCCTCTACCGTTGTCGCCA 	6
------------------------------------------------------------------------------------------------------GTGCCCTCTACCGTTGTCGCC 	93
------------------------------------------------------------------------------------------------------GTGCCCTCTACCGTTGTCG 	2
-------------------------------------------------------------------------------------------------------TGCCCTCTACCGTTGTCGCCA 	1
-------------------------------------------------------------------------------------------------------TGCCCTCTACCGTTGTCGCC 	4


Overlaps with: MNEST039518 MNEST051420
Overlaps with miRBase pre-miRNAs: ppt-MIR535a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Physcomitrella patens GSM313213 TGACAACGAGAGAGAGCACGC GTGCCCTTTCCCGTTGTCGCC up 2 0


Secondary structure

CCCATGGTAGAAGAAGAAGAAGAAGTGTCGGTGACCCTTAGTGACAACGAGAGAGAGCACGCTGGAATGCTTTCACGCAATAAGCCTGGATGTGTTCTTGCGTGCCCTTTCCCGTTGTCGCCAACTATCTTGTCGATGAGTTCTCTCCTCCTATGTTGCA
-----------------------------------------TGACAACGAGAGAGAGCACGCT 	70
-----------------------------------------TGACAACGAGAGAGAGCACG 	50
-----------------------------------------TGACAACGAGAGAGAGCACGC 	1367
-----------------------------------------TGACAACGAGAGAGAGCAC 	29
------------------------------------------GACAACGAGAGAGAGCACGCT 	1
------------------------------------------GACAACGAGAGAGAGCACGC 	15
------------------------------------------GACAACGAGAGAGAGCACG 	1
-------------------------------------------ACAACGAGAGAGAGCACGCT 	1
-------------------------------------------ACAACGAGAGAGAGCACGC 	1
----------------------------------------------ACGAGAGAGAGCACGCTGGAA 	1
-----------------------------------------------------------------------------------------------------GTGCCCTTTCCCGTTGTCGC 	3
-----------------------------------------------------------------------------------------------------GTGCCCTTTCCCGTTGTCGCC 	9


Overlaps with: MNEST039520 MNEST051422
Overlaps with miRBase pre-miRNAs: ppt-MIR535c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Physcomitrella patens GSM313213 TGACAACGAGAGAGAGCACGC GTGCCCTCTCCCGCTGTCGCC up 3 0


Secondary structure

ACGCATCTAGGTGACAACGAGAGAGAGCACGCTGGAATGCACTCTTGTAAGAAGCATGGGTATGTTCTTGTGTGCCCTCTCCCGCTGTCGCCAAGTTCTA
-----------TGACAACGAGAGAGAGCACGCT 	70
-----------TGACAACGAGAGAGAGCACG 	50
-----------TGACAACGAGAGAGAGCACGC 	1367
-----------TGACAACGAGAGAGAGCAC 	29
------------GACAACGAGAGAGAGCACGCT 	1
------------GACAACGAGAGAGAGCACGC 	15
------------GACAACGAGAGAGAGCACG 	1
-------------ACAACGAGAGAGAGCACGCT 	1
-------------ACAACGAGAGAGAGCACGC 	1
----------------ACGAGAGAGAGCACGCTGGAA 	1
-------------------AGAGAGAGCACGCTGGAATGCAC 	1
---------------------AGAGAGCACGCTGGAATGCAC 	2
----------------------GAGAGCACGCTGGAATGCAC 	1
----------------------GAGAGCACGCTGGAATGCA 	1
----------------------GAGAGCACGCTGGAATGCACT 	6
-----------------------------------------------------------------------GTGCCCTCTCCCGCTGTCGCC 	18
-----------------------------------------------------------------------GTGCCCTCTCCCGCTGTCGC 	7
-----------------------------------------------------------------------GTGCCCTCTCCCGCTGTCGCCA 	1


Overlaps with: MNEST039519 MNEST051421
Overlaps with miRBase pre-miRNAs: ppt-MIR535b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Physcomitrella patens GSM313213 TGACAACGAGAGAGAGCACGC GTGCCCTCTCCCGTCGTCACC up 3 0


Secondary structure

GCGTAAGTGGGTGACAACGAGAGAGAGCACGCCGGAATGCGTTCATGCAGCGAGTGCCTGGAGGTGTTCGAGCGTGCCCTCTCCCGTCGTCACCAATCTTTT
-----------TGACAACGAGAGAGAGCACGCC 	137
-----------TGACAACGAGAGAGAGCACG 	50
-----------TGACAACGAGAGAGAGCACGC 	1367
-----------TGACAACGAGAGAGAGCAC 	29
------------GACAACGAGAGAGAGCACGCC 	1
------------GACAACGAGAGAGAGCACGC 	15
------------GACAACGAGAGAGAGCACG 	1
-------------ACAACGAGAGAGAGCACGC 	1
----------------ACGAGAGAGAGCACGCCGGAA 	1
-----------------------------------------------CAGCGAGTGCCTGGAGGTGTTCGA 	1
-------------------------------------------------GCGAGTGCCTGGAGGTGTTCGA 	1
-------------------------------------------------------------AGGTGTTCGAGCGTGCCCTCT 	1
--------------------------------------------------------------------CGAGCGTGCCCTCTCCCGTCG 	3
-------------------------------------------------------------------------GTGCCCTCTCCCGTCGTCACC 	424
-------------------------------------------------------------------------GTGCCCTCTCCCGTCGTCAC 	31
-------------------------------------------------------------------------GTGCCCTCTCCCGTCGTCACCA 	5
-------------------------------------------------------------------------GTGCCCTCTCCCGTCGTCA 	2
--------------------------------------------------------------------------TGCCCTCTCCCGTCGTCACC 	5


Overlaps with: MNEST039521 MNEST051423
Overlaps with miRBase pre-miRNAs: ppt-MIR535d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Physcomitrella patens GSM313215 TGACAACGAGAGAGAGCACGC GTGCCCTCTACCGTTGTCGCC up 3 0


Secondary structure

ATAAACTGAAAGCTTGGAGGTGAAACGGTGGAGAACCTAGGTGACAACGAGAGAGAGCACGCTGGAATGCTTTTCATGCAATACGCTTGGATGTGTTCTAGCGTGCCCTCTACCGTTGTCGCCAAACATCTTCTCCATGACTTCTCCTCTCGTCTGTATTC
----------------------------------------GTGACAACGAGAGAGAGCACGC 	1
----------------------------------------GTGACAACGAGAGAGAGCAC 	1
----------------------------------------GTGACAACGAGAGAGAGCACG 	1
-----------------------------------------TGACAACGAGAGAGAGCACGCT 	61
-----------------------------------------TGACAACGAGAGAGAGCACG 	32
-----------------------------------------TGACAACGAGAGAGAGCACGC 	3394
-----------------------------------------TGACAACGAGAGAGAGCAC 	20
------------------------------------------GACAACGAGAGAGAGCACGC 	42
-------------------------------------------ACAACGAGAGAGAGCACGC 	12
---------------------------------------------AACGAGAGAGAGCACGCTGG 	1
--------------------------------------------------------------------------------------TTGGATGTGTTCTAGCGTGCC 	1
-----------------------------------------------------------------------------------------------------CGTGCCCTCTACCGTTGTCGCC 	1
------------------------------------------------------------------------------------------------------GTGCCCTCTACCGTTGTCGC 	10
------------------------------------------------------------------------------------------------------GTGCCCTCTACCGTTGTCGCC 	104
-------------------------------------------------------------------------------------------------------TGCCCTCTACCGTTGTCGCC 	3


Overlaps with: MNEST039518 MNEST051420
Overlaps with miRBase pre-miRNAs: ppt-MIR535a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
18 Physcomitrella patens GSM313215 TGACAACGAGAGAGAGCACGC GTGCCCTTTCCCGTTGTCGCC up 2 0


Secondary structure

CCCATGGTAGAAGAAGAAGAAGAAGTGTCGGTGACCCTTAGTGACAACGAGAGAGAGCACGCTGGAATGCTTTCACGCAATAAGCCTGGATGTGTTCTTGCGTGCCCTTTCCCGTTGTCGCCAACTATCTTGTCGATGAGTTCTCTCCTCCTATGTTGCA
----------------------------------------GTGACAACGAGAGAGAGCACGC 	1
----------------------------------------GTGACAACGAGAGAGAGCAC 	1
----------------------------------------GTGACAACGAGAGAGAGCACG 	1
-----------------------------------------TGACAACGAGAGAGAGCACGCT 	61
-----------------------------------------TGACAACGAGAGAGAGCACG 	32
-----------------------------------------TGACAACGAGAGAGAGCACGC 	3394
-----------------------------------------TGACAACGAGAGAGAGCAC 	20
------------------------------------------GACAACGAGAGAGAGCACGC 	42
-------------------------------------------ACAACGAGAGAGAGCACGC 	12
---------------------------------------------AACGAGAGAGAGCACGCTGG 	1
-----------------------------------------------------------------------------------------------------GTGCCCTTTCCCGTTGTCGCCA 	2
-----------------------------------------------------------------------------------------------------GTGCCCTTTCCCGTTGTCGCC 	12


Overlaps with: MNEST039520 MNEST051422
Overlaps with miRBase pre-miRNAs: ppt-MIR535c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
19 Physcomitrella patens GSM313215 TGACAACGAGAGAGAGCACGC GTGCCCTCTCCCGCTGTCGCC up 3 0


Secondary structure

ACGCATCTAGGTGACAACGAGAGAGAGCACGCTGGAATGCACTCTTGTAAGAAGCATGGGTATGTTCTTGTGTGCCCTCTCCCGCTGTCGCCAAGTTCTA
----------GTGACAACGAGAGAGAGCACGC 	1
----------GTGACAACGAGAGAGAGCAC 	1
----------GTGACAACGAGAGAGAGCACG 	1
-----------TGACAACGAGAGAGAGCACGCT 	61
-----------TGACAACGAGAGAGAGCACG 	32
-----------TGACAACGAGAGAGAGCACGC 	3394
-----------TGACAACGAGAGAGAGCAC 	20
------------GACAACGAGAGAGAGCACGC 	42
-------------ACAACGAGAGAGAGCACGC 	12
---------------AACGAGAGAGAGCACGCTGG 	1
---------------------AGAGAGCACGCTGGAATGCAC 	1
----------------------GAGAGCACGCTGGAATGCACT 	3
----------------------GAGAGCACGCTGGAATGCA 	1
----------------------GAGAGCACGCTGGAATGCAC 	13
-----------------------AGAGCACGCTGGAATGCACTC 	1
-----------------------AGAGCACGCTGGAATGCACTCTTGT 	1
-----------------------AGAGCACGCTGGAATGCACT 	1
------------------------GAGCACGCTGGAATGCACTCT 	1
------------------------------------------------------------TATGTTCTTGTGTGCCCTCTC 	2
-----------------------------------------------------------------------GTGCCCTCTCCCGCTGTCGCC 	123
-----------------------------------------------------------------------GTGCCCTCTCCCGCTGTCGC 	24
-----------------------------------------------------------------------GTGCCCTCTCCCGCTGTCGCCA 	1
------------------------------------------------------------------------TGCCCTCTCCCGCTGTCGC 	1
------------------------------------------------------------------------TGCCCTCTCCCGCTGTCGCC 	4


Overlaps with: MNEST039519 MNEST051421
Overlaps with miRBase pre-miRNAs: ppt-MIR535b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
20 Physcomitrella patens GSM313215 TGACAACGAGAGAGAGCACGC GTGCCCTCTCCCGTCGTCACC up 3 0


Secondary structure

GCGTAAGTGGGTGACAACGAGAGAGAGCACGCCGGAATGCGTTCATGCAGCGAGTGCCTGGAGGTGTTCGAGCGTGCCCTCTCCCGTCGTCACCAATCTTTT
----------GTGACAACGAGAGAGAGCACGC 	1
----------GTGACAACGAGAGAGAGCAC 	1
----------GTGACAACGAGAGAGAGCACG 	1
-----------TGACAACGAGAGAGAGCACGCC 	398
-----------TGACAACGAGAGAGAGCACG 	32
-----------TGACAACGAGAGAGAGCACGC 	3394
-----------TGACAACGAGAGAGAGCAC 	20
------------GACAACGAGAGAGAGCACGCC 	7
------------GACAACGAGAGAGAGCACGC 	42
-------------ACAACGAGAGAGAGCACGC 	12
-------------ACAACGAGAGAGAGCACGCC 	1
---------------AACGAGAGAGAGCACGCCGGAA 	1
----------------ACGAGAGAGAGCACGCCGGAA 	4
----------------ACGAGAGAGAGCACGCCGGA 	14
--------------------------------------------------------------------CGAGCGTGCCCTCTCCCGTCGT 	3
--------------------------------------------------------------------CGAGCGTGCCCTCTCCCGTCG 	3
--------------------------------------------------------------------CGAGCGTGCCCTCTCCCGT 	1
--------------------------------------------------------------------CGAGCGTGCCCTCTCCCGTC 	1
---------------------------------------------------------------------GAGCGTGCCCTCTCCCGTCGT 	1
------------------------------------------------------------------------CGTGCCCTCTCCCGTCGTCACC 	2
-------------------------------------------------------------------------GTGCCCTCTCCCGTCGTCACCA 	2
-------------------------------------------------------------------------GTGCCCTCTCCCGTCGTCACC 	1012
-------------------------------------------------------------------------GTGCCCTCTCCCGTCGTCAC 	20
-------------------------------------------------------------------------GTGCCCTCTCCCGTCGTCA 	4
--------------------------------------------------------------------------TGCCCTCTCCCGTCGTCACC 	8
---------------------------------------------------------------------------GCCCTCTCCCGTCGTCACC 	1


Overlaps with: MNEST039521 MNEST051423
Overlaps with miRBase pre-miRNAs: ppt-MIR535d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
21 Physcomitrella patens GSM115096 TGACAACGAGAGAGAGCACGC GTGCCCTCTACCGTTGTCGCC up 3 0


Secondary structure

ATAAACTGAAAGCTTGGAGGTGAAACGGTGGAGAACCTAGGTGACAACGAGAGAGAGCACGCTGGAATGCTTTTCATGCAATACGCTTGGATGTGTTCTAGCGTGCCCTCTACCGTTGTCGCCAAACATCTTCTCCATGACTTCTCCTCTCGTCTGTATTC
----------------------------------------GTGACAACGAGAGAGAGCACGC 	1
-----------------------------------------TGACAACGAGAGAGAGCACG 	12
-----------------------------------------TGACAACGAGAGAGAGCACGCT 	37
-----------------------------------------TGACAACGAGAGAGAGCACGC 	1941
-----------------------------------------TGACAACGAGAGAGAGCAC 	7
------------------------------------------GACAACGAGAGAGAGCACGC 	2
------------------------------------------------------------------------------------------------------GTGCCCTCTACCGTTGTCGCC 	12
------------------------------------------------------------------------------------------------------GTGCCCTCTACCGTTGTCGC 	5
-------------------------------------------------------------------------------------------------------TGCCCTCTACCGTTGTCGCC 	3
-------------------------------------------------------------------------------------------------------TGCCCTCTACCGTTGTCGC 	1
--------------------------------------------------------------------------------------------------------GCCCTCTACCGTTGTCGCC 	1


Overlaps with: MNEST039518 MNEST051420
Overlaps with miRBase pre-miRNAs: ppt-MIR535a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
22 Physcomitrella patens GSM115096 TGACAACGAGAGAGAGCACGC GTGCCCTTTCCCGTTGTCGCC up 2 0


Secondary structure

CCCATGGTAGAAGAAGAAGAAGAAGTGTCGGTGACCCTTAGTGACAACGAGAGAGAGCACGCTGGAATGCTTTCACGCAATAAGCCTGGATGTGTTCTTGCGTGCCCTTTCCCGTTGTCGCCAACTATCTTGTCGATGAGTTCTCTCCTCCTATGTTGCA
----------------------------------------GTGACAACGAGAGAGAGCACGC 	1
-----------------------------------------TGACAACGAGAGAGAGCACG 	12
-----------------------------------------TGACAACGAGAGAGAGCACGCT 	37
-----------------------------------------TGACAACGAGAGAGAGCACGC 	1941
-----------------------------------------TGACAACGAGAGAGAGCAC 	7
------------------------------------------GACAACGAGAGAGAGCACGC 	2
-----------------------------------------------------------------------------------------------------GTGCCCTTTCCCGTTGTCGCC 	1
------------------------------------------------------------------------------------------------------TGCCCTTTCCCGTTGTCGCC 	5


Overlaps with: MNEST039520 MNEST051422
Overlaps with miRBase pre-miRNAs: ppt-MIR535c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
23 Physcomitrella patens GSM115096 TGACAACGAGAGAGAGCACGC GTGCCCTCTCCCGCTGTCGCC up 3 0


Secondary structure

ACGCATCTAGGTGACAACGAGAGAGAGCACGCTGGAATGCACTCTTGTAAGAAGCATGGGTATGTTCTTGTGTGCCCTCTCCCGCTGTCGCCAAGTTCTA
----------GTGACAACGAGAGAGAGCACGC 	1
-----------TGACAACGAGAGAGAGCACG 	12
-----------TGACAACGAGAGAGAGCACGCT 	37
-----------TGACAACGAGAGAGAGCACGC 	1941
-----------TGACAACGAGAGAGAGCAC 	7
------------GACAACGAGAGAGAGCACGC 	2


Overlaps with: MNEST039519 MNEST051421
Overlaps with miRBase pre-miRNAs: ppt-MIR535b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
24 Physcomitrella patens GSM115096 TGACAACGAGAGAGAGCACGC GTGCCCTCTCCCGTCGTCACC up 3 0


Secondary structure

GCGTAAGTGGGTGACAACGAGAGAGAGCACGCCGGAATGCGTTCATGCAGCGAGTGCCTGGAGGTGTTCGAGCGTGCCCTCTCCCGTCGTCACCAATCTTTT
----------GTGACAACGAGAGAGAGCACGC 	1
-----------TGACAACGAGAGAGAGCACG 	12
-----------TGACAACGAGAGAGAGCACGCC 	164
-----------TGACAACGAGAGAGAGCACGC 	1941
-----------TGACAACGAGAGAGAGCAC 	7
------------GACAACGAGAGAGAGCACGC 	2
----------------ACGAGAGAGAGCACGCCGGAA 	4
----------------ACGAGAGAGAGCACGCCGGA 	3
--------------------------------------------------------------------CGAGCGTGCCCTCTCCCGTCG 	2
-------------------------------------------------------------------------GTGCCCTCTCCCGTCGTCACC 	2
--------------------------------------------------------------------------TGCCCTCTCCCGTCGTCACC 	3


Overlaps with: MNEST039521 MNEST051423
Overlaps with miRBase pre-miRNAs: ppt-MIR535d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
25 Physcomitrella patens GSM313216 TGACAACGAGAGAGAGCACGC GTGCCCTCTACCGTTGTCGCC up 3 0


Secondary structure

ATAAACTGAAAGCTTGGAGGTGAAACGGTGGAGAACCTAGGTGACAACGAGAGAGAGCACGCTGGAATGCTTTTCATGCAATACGCTTGGATGTGTTCTAGCGTGCCCTCTACCGTTGTCGCCAAACATCTTCTCCATGACTTCTCCTCTCGTCTGTATTC
-----------------------------------------TGACAACGAGAGAGAGCACGCT 	65
-----------------------------------------TGACAACGAGAGAGAGCACG 	20
-----------------------------------------TGACAACGAGAGAGAGCACGC 	3341
-----------------------------------------TGACAACGAGAGAGAGCAC 	66
------------------------------------------GACAACGAGAGAGAGCACGCT 	2
------------------------------------------GACAACGAGAGAGAGCACGC 	36
-------------------------------------------ACAACGAGAGAGAGCACGC 	20
----------------------------------------------------------------------------------------GGATGTGTTCTAGCGTGCCCT 	1
------------------------------------------------------------------------------------------------------GTGCCCTCTACCGTTGTCGC 	19
------------------------------------------------------------------------------------------------------GTGCCCTCTACCGTTGTCGCC 	59


Overlaps with: MNEST039518 MNEST051420
Overlaps with miRBase pre-miRNAs: ppt-MIR535a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
26 Physcomitrella patens GSM313216 TGACAACGAGAGAGAGCACGC GTGCCCTTTCCCGTTGTCGCC up 2 0


Secondary structure

CCCATGGTAGAAGAAGAAGAAGAAGTGTCGGTGACCCTTAGTGACAACGAGAGAGAGCACGCTGGAATGCTTTCACGCAATAAGCCTGGATGTGTTCTTGCGTGCCCTTTCCCGTTGTCGCCAACTATCTTGTCGATGAGTTCTCTCCTCCTATGTTGCA
-----------------------------------------TGACAACGAGAGAGAGCACGCT 	65
-----------------------------------------TGACAACGAGAGAGAGCACG 	20
-----------------------------------------TGACAACGAGAGAGAGCACGC 	3341
-----------------------------------------TGACAACGAGAGAGAGCAC 	66
------------------------------------------GACAACGAGAGAGAGCACGCT 	2
------------------------------------------GACAACGAGAGAGAGCACGC 	36
-------------------------------------------ACAACGAGAGAGAGCACGC 	20
-----------------------------------------------------------------------------------------------------GTGCCCTTTCCCGTTGTCGC 	2
-----------------------------------------------------------------------------------------------------GTGCCCTTTCCCGTTGTCGCC 	4


Overlaps with: MNEST039520 MNEST051422
Overlaps with miRBase pre-miRNAs: ppt-MIR535c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
27 Physcomitrella patens GSM313216 TGACAACGAGAGAGAGCACGC GTGCCCTCTCCCGCTGTCGCC up 3 0


Secondary structure

ACGCATCTAGGTGACAACGAGAGAGAGCACGCTGGAATGCACTCTTGTAAGAAGCATGGGTATGTTCTTGTGTGCCCTCTCCCGCTGTCGCCAAGTTCTA
-----------TGACAACGAGAGAGAGCACGCT 	65
-----------TGACAACGAGAGAGAGCACG 	20
-----------TGACAACGAGAGAGAGCACGC 	3341
-----------TGACAACGAGAGAGAGCAC 	66
------------GACAACGAGAGAGAGCACGCT 	2
------------GACAACGAGAGAGAGCACGC 	36
-------------ACAACGAGAGAGAGCACGC 	20
----------------------GAGAGCACGCTGGAATGCA 	3
----------------------GAGAGCACGCTGGAATGCACT 	1
----------------------GAGAGCACGCTGGAATGCAC 	1
-----------------------------------------------------------------------GTGCCCTCTCCCGCTGTCGCC 	19
-----------------------------------------------------------------------GTGCCCTCTCCCGCTGTCGC 	12


Overlaps with: MNEST039519 MNEST051421
Overlaps with miRBase pre-miRNAs: ppt-MIR535b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
28 Physcomitrella patens GSM313216 TGACAACGAGAGAGAGCACGC GTGCCCTCTCCCGTCGTCACC up 3 0


Secondary structure

GCGTAAGTGGGTGACAACGAGAGAGAGCACGCCGGAATGCGTTCATGCAGCGAGTGCCTGGAGGTGTTCGAGCGTGCCCTCTCCCGTCGTCACCAATCTTTT
-----------TGACAACGAGAGAGAGCACGCC 	304
-----------TGACAACGAGAGAGAGCACG 	20
-----------TGACAACGAGAGAGAGCACGC 	3341
-----------TGACAACGAGAGAGAGCAC 	66
------------GACAACGAGAGAGAGCACGCC 	3
------------GACAACGAGAGAGAGCACGC 	36
-------------ACAACGAGAGAGAGCACGCC 	1
-------------ACAACGAGAGAGAGCACGC 	20
----------------ACGAGAGAGAGCACGCCGGAA 	2
----------------ACGAGAGAGAGCACGCCGGA 	11
--------------------------------CGGAATGCGTTCATGCAGC 	3
-------------------------------------------------GCGAGTGCCTGGAGGTGTTCGAGC 	1
----------------------------------------------------AGTGCCTGGAGGTGTTCGAGC 	2
------------------------------------------------------TGCCTGGAGGTGTTCGAGC 	1
-------------------------------------------------------------AGGTGTTCGAGCGTGCCCTCT 	1
--------------------------------------------------------------------CGAGCGTGCCCTCTCCCGTCGT 	1
--------------------------------------------------------------------CGAGCGTGCCCTCTCCCGTCG 	4
-------------------------------------------------------------------------GTGCCCTCTCCCGTCGTCACC 	618
-------------------------------------------------------------------------GTGCCCTCTCCCGTCGTCACCA 	5
-------------------------------------------------------------------------GTGCCCTCTCCCGTCGTCA 	6
-------------------------------------------------------------------------GTGCCCTCTCCCGTCGTCAC 	39
--------------------------------------------------------------------------TGCCCTCTCCCGTCGTCACC 	18
--------------------------------------------------------------------------TGCCCTCTCCCGTCGTCAC 	2


Overlaps with: MNEST039521 MNEST051423
Overlaps with miRBase pre-miRNAs: ppt-MIR535d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
29 Physcomitrella patens GSM313214 TGACAACGAGAGAGAGCACGC GTGCCCTCTACCGTTGTCGCC up 3 0


Secondary structure

ATAAACTGAAAGCTTGGAGGTGAAACGGTGGAGAACCTAGGTGACAACGAGAGAGAGCACGCTGGAATGCTTTTCATGCAATACGCTTGGATGTGTTCTAGCGTGCCCTCTACCGTTGTCGCCAAACATCTTCTCCATGACTTCTCCTCTCGTCTGTATTC
----------------------------------------GTGACAACGAGAGAGAGCACGC 	2
-----------------------------------------TGACAACGAGAGAGAGCACGCT 	57
-----------------------------------------TGACAACGAGAGAGAGCACG 	34
-----------------------------------------TGACAACGAGAGAGAGCACGC 	3662
-----------------------------------------TGACAACGAGAGAGAGCACGCTG 	1
-----------------------------------------TGACAACGAGAGAGAGCAC 	13
------------------------------------------GACAACGAGAGAGAGCACGCT 	1
------------------------------------------GACAACGAGAGAGAGCACG 	3
------------------------------------------GACAACGAGAGAGAGCACGC 	41
-------------------------------------------ACAACGAGAGAGAGCACGC 	9
-------------------------------------------------------AGCACGCTGGAATGCTTTTCATGCAA 	1
-----------------------------------------------------------------------------------CGCTTGGATGTGTTCTAGCGTGC 	1
------------------------------------------------------------------------------------------------------GTGCCCTCTACCGTTGTCGC 	12
------------------------------------------------------------------------------------------------------GTGCCCTCTACCGTTGTCGCC 	109
------------------------------------------------------------------------------------------------------GTGCCCTCTACCGTTGTCGCCA 	1
-------------------------------------------------------------------------------------------------------TGCCCTCTACCGTTGTCGCC 	1


Overlaps with: MNEST039518 MNEST051420
Overlaps with miRBase pre-miRNAs: ppt-MIR535a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
30 Physcomitrella patens GSM313214 TGACAACGAGAGAGAGCACGC GTGCCCTTTCCCGTTGTCGCC up 2 0


Secondary structure

CCCATGGTAGAAGAAGAAGAAGAAGTGTCGGTGACCCTTAGTGACAACGAGAGAGAGCACGCTGGAATGCTTTCACGCAATAAGCCTGGATGTGTTCTTGCGTGCCCTTTCCCGTTGTCGCCAACTATCTTGTCGATGAGTTCTCTCCTCCTATGTTGCA
----------------------------------------GTGACAACGAGAGAGAGCACGC 	2
-----------------------------------------TGACAACGAGAGAGAGCACGCT 	57
-----------------------------------------TGACAACGAGAGAGAGCACG 	34
-----------------------------------------TGACAACGAGAGAGAGCACGC 	3662
-----------------------------------------TGACAACGAGAGAGAGCACGCTG 	1
-----------------------------------------TGACAACGAGAGAGAGCAC 	13
------------------------------------------GACAACGAGAGAGAGCACGCT 	1
------------------------------------------GACAACGAGAGAGAGCACG 	3
------------------------------------------GACAACGAGAGAGAGCACGC 	41
-------------------------------------------ACAACGAGAGAGAGCACGC 	9
-----------------------------------------------------------------------------------------------------GTGCCCTTTCCCGTTGTCGCC 	16
------------------------------------------------------------------------------------------------------TGCCCTTTCCCGTTGTCGCC 	1


Overlaps with: MNEST039520 MNEST051422
Overlaps with miRBase pre-miRNAs: ppt-MIR535c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
31 Physcomitrella patens GSM313214 TGACAACGAGAGAGAGCACGC GTGCCCTCTCCCGCTGTCGCC up 3 0


Secondary structure

ACGCATCTAGGTGACAACGAGAGAGAGCACGCTGGAATGCACTCTTGTAAGAAGCATGGGTATGTTCTTGTGTGCCCTCTCCCGCTGTCGCCAAGTTCTA
----------GTGACAACGAGAGAGAGCACGC 	2
-----------TGACAACGAGAGAGAGCACGCT 	57
-----------TGACAACGAGAGAGAGCACG 	34
-----------TGACAACGAGAGAGAGCACGC 	3662
-----------TGACAACGAGAGAGAGCACGCTG 	1
-----------TGACAACGAGAGAGAGCAC 	13
------------GACAACGAGAGAGAGCACGCT 	1
------------GACAACGAGAGAGAGCACG 	3
------------GACAACGAGAGAGAGCACGC 	41
-------------ACAACGAGAGAGAGCACGC 	9
----------------------GAGAGCACGCTGGAATGCA 	5
----------------------GAGAGCACGCTGGAATGCACT 	1
----------------------GAGAGCACGCTGGAATGCACTCT 	1
----------------------GAGAGCACGCTGGAATGCAC 	5
-----------------------AGAGCACGCTGGAATGCACTC 	1
-----------------------AGAGCACGCTGGAATGCACTCT 	1
-----------------------AGAGCACGCTGGAATGCACTCTTGT 	2
------------------------GAGCACGCTGGAATGCACTCT 	1
------------------------GAGCACGCTGGAATGCACTCTTGTA 	2
------------------------GAGCACGCTGGAATGCACTCTT 	2
------------------------GAGCACGCTGGAATGCACTCTTGTAA 	2
--------------------------------TGGAATGCACTCTTGTAAG 	1
---------------------------------------------------AAGCATGGGTATGTTCTTGT 	1
-------------------------------------------------------ATGGGTATGTTCTTGTGTGCCCTCT 	1
----------------------------------------------------------GGTATGTTCTTGTGTGCCCT 	1
------------------------------------------------------------TATGTTCTTGTGTGCCCTCTC 	1
-----------------------------------------------------------------------GTGCCCTCTCCCGCTGTCGC 	32
-----------------------------------------------------------------------GTGCCCTCTCCCGCTGTCG 	4
-----------------------------------------------------------------------GTGCCCTCTCCCGCTGTCGCC 	127
------------------------------------------------------------------------TGCCCTCTCCCGCTGTCGC 	1
------------------------------------------------------------------------TGCCCTCTCCCGCTGTCGCC 	8


Overlaps with: MNEST039519 MNEST051421
Overlaps with miRBase pre-miRNAs: ppt-MIR535b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
32 Physcomitrella patens GSM313214 TGACAACGAGAGAGAGCACGC GTGCCCTCTCCCGTCGTCACC up 3 0


Secondary structure

GCGTAAGTGGGTGACAACGAGAGAGAGCACGCCGGAATGCGTTCATGCAGCGAGTGCCTGGAGGTGTTCGAGCGTGCCCTCTCCCGTCGTCACCAATCTTTT
----------GTGACAACGAGAGAGAGCACGC 	2
-----------TGACAACGAGAGAGAGCACGCC 	481
-----------TGACAACGAGAGAGAGCACG 	34
-----------TGACAACGAGAGAGAGCACGC 	3662
-----------TGACAACGAGAGAGAGCAC 	13
------------GACAACGAGAGAGAGCACG 	3
------------GACAACGAGAGAGAGCACGCC 	9
------------GACAACGAGAGAGAGCACGC 	41
-------------ACAACGAGAGAGAGCACGC 	9
---------------AACGAGAGAGAGCACGCCGGAA 	1
----------------ACGAGAGAGAGCACGCCGGAA 	2
----------------ACGAGAGAGAGCACGCCGGA 	7
--------------------------------------------------CGAGTGCCTGGAGGTGTTCGAGC 	1
--------------------------------------------------------------------CGAGCGTGCCCTCTCCCGTCGT 	3
--------------------------------------------------------------------CGAGCGTGCCCTCTCCCGTCG 	8
--------------------------------------------------------------------CGAGCGTGCCCTCTCCCGTC 	1
---------------------------------------------------------------------GAGCGTGCCCTCTCCCGTCGT 	1
-------------------------------------------------------------------------GTGCCCTCTCCCGTCGTCACCA 	1
-------------------------------------------------------------------------GTGCCCTCTCCCGTCGTCACC 	1317
-------------------------------------------------------------------------GTGCCCTCTCCCGTCGTCA 	3
-------------------------------------------------------------------------GTGCCCTCTCCCGTCGTCAC 	28
--------------------------------------------------------------------------TGCCCTCTCCCGTCGTCACC 	18
---------------------------------------------------------------------------GCCCTCTCCCGTCGTCACC 	1


Overlaps with: MNEST039521 MNEST051423
Overlaps with miRBase pre-miRNAs: ppt-MIR535d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
33 Physcomitrella patens GSM313217 TGACAACGAGAGAGAGCACGC GTGCCCTCTACCGTTGTCGCC up 3 0


Secondary structure

ATAAACTGAAAGCTTGGAGGTGAAACGGTGGAGAACCTAGGTGACAACGAGAGAGAGCACGCTGGAATGCTTTTCATGCAATACGCTTGGATGTGTTCTAGCGTGCCCTCTACCGTTGTCGCCAAACATCTTCTCCATGACTTCTCCTCTCGTCTGTATTC
----------------------------------------GTGACAACGAGAGAGAGCACG 	2
-----------------------------------------TGACAACGAGAGAGAGCACGCT 	76
-----------------------------------------TGACAACGAGAGAGAGCACG 	30
-----------------------------------------TGACAACGAGAGAGAGCACGCTG 	1
-----------------------------------------TGACAACGAGAGAGAGCACGC 	3371
-----------------------------------------TGACAACGAGAGAGAGCAC 	52
------------------------------------------GACAACGAGAGAGAGCACGCT 	2
------------------------------------------GACAACGAGAGAGAGCACGC 	33
-------------------------------------------ACAACGAGAGAGAGCACGC 	14
----------------------------------------------------------------------------TGCAATACGCTTGGATGTGTTCTAGC 	1
------------------------------------------------------------------------------------------------------GTGCCCTCTACCGTTGTCGC 	20
------------------------------------------------------------------------------------------------------GTGCCCTCTACCGTTGTCGCC 	70
------------------------------------------------------------------------------------------------------GTGCCCTCTACCGTTGTCGCCA 	2
-------------------------------------------------------------------------------------------------------TGCCCTCTACCGTTGTCGC 	1
-------------------------------------------------------------------------------------------------------TGCCCTCTACCGTTGTCGCC 	1


Overlaps with: MNEST039518 MNEST051420
Overlaps with miRBase pre-miRNAs: ppt-MIR535a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
34 Physcomitrella patens GSM313217 TGACAACGAGAGAGAGCACGC GTGCCCTTTCCCGTTGTCGCC up 2 0


Secondary structure

CCCATGGTAGAAGAAGAAGAAGAAGTGTCGGTGACCCTTAGTGACAACGAGAGAGAGCACGCTGGAATGCTTTCACGCAATAAGCCTGGATGTGTTCTTGCGTGCCCTTTCCCGTTGTCGCCAACTATCTTGTCGATGAGTTCTCTCCTCCTATGTTGCA
----------------------------------------GTGACAACGAGAGAGAGCACG 	2
-----------------------------------------TGACAACGAGAGAGAGCACGCT 	76
-----------------------------------------TGACAACGAGAGAGAGCACG 	30
-----------------------------------------TGACAACGAGAGAGAGCACGCTG 	1
-----------------------------------------TGACAACGAGAGAGAGCACGC 	3371
-----------------------------------------TGACAACGAGAGAGAGCAC 	52
------------------------------------------GACAACGAGAGAGAGCACGCT 	2
------------------------------------------GACAACGAGAGAGAGCACGC 	33
-------------------------------------------ACAACGAGAGAGAGCACGC 	14
-----------------------------------------------------------------------------------------------------GTGCCCTTTCCCGTTGTCGC 	2
-----------------------------------------------------------------------------------------------------GTGCCCTTTCCCGTTGTCGCC 	10


Overlaps with: MNEST039520 MNEST051422
Overlaps with miRBase pre-miRNAs: ppt-MIR535c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
35 Physcomitrella patens GSM313217 TGACAACGAGAGAGAGCACGC GTGCCCTCTCCCGCTGTCGCC up 3 0


Secondary structure

ACGCATCTAGGTGACAACGAGAGAGAGCACGCTGGAATGCACTCTTGTAAGAAGCATGGGTATGTTCTTGTGTGCCCTCTCCCGCTGTCGCCAAGTTCTA
----------GTGACAACGAGAGAGAGCACG 	2
-----------TGACAACGAGAGAGAGCACGCT 	76
-----------TGACAACGAGAGAGAGCACG 	30
-----------TGACAACGAGAGAGAGCACGCTG 	1
-----------TGACAACGAGAGAGAGCACGC 	3371
-----------TGACAACGAGAGAGAGCAC 	52
------------GACAACGAGAGAGAGCACGCT 	2
------------GACAACGAGAGAGAGCACGC 	33
-------------ACAACGAGAGAGAGCACGC 	14
---------------------AGAGAGCACGCTGGAATGCA 	1
----------------------GAGAGCACGCTGGAATGCAC 	3
----------------------GAGAGCACGCTGGAATGCACT 	2
----------------------GAGAGCACGCTGGAATGCA 	2
-----------------------AGAGCACGCTGGAATGCACTCTTG 	1
-----------------------------------------------------------------------GTGCCCTCTCCCGCTGTCGCC 	17
-----------------------------------------------------------------------GTGCCCTCTCCCGCTGTCGCCA 	1
-----------------------------------------------------------------------GTGCCCTCTCCCGCTGTCGC 	10
------------------------------------------------------------------------TGCCCTCTCCCGCTGTCGC 	1
------------------------------------------------------------------------TGCCCTCTCCCGCTGTCGCC 	3


Overlaps with: MNEST039519 MNEST051421
Overlaps with miRBase pre-miRNAs: ppt-MIR535b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
36 Physcomitrella patens GSM313217 TGACAACGAGAGAGAGCACGC GTGCCCTCTCCCGTCGTCACC up 3 0


Secondary structure

GCGTAAGTGGGTGACAACGAGAGAGAGCACGCCGGAATGCGTTCATGCAGCGAGTGCCTGGAGGTGTTCGAGCGTGCCCTCTCCCGTCGTCACCAATCTTTT
----------GTGACAACGAGAGAGAGCACG 	2
-----------TGACAACGAGAGAGAGCACGCC 	271
-----------TGACAACGAGAGAGAGCACG 	30
-----------TGACAACGAGAGAGAGCACGC 	3371
-----------TGACAACGAGAGAGAGCAC 	52
------------GACAACGAGAGAGAGCACGCC 	4
------------GACAACGAGAGAGAGCACGC 	33
-------------ACAACGAGAGAGAGCACGCC 	1
-------------ACAACGAGAGAGAGCACGC 	14
--------------CAACGAGAGAGAGCACGCC 	1
---------------AACGAGAGAGAGCACGCCGGA 	1
----------------ACGAGAGAGAGCACGCCGGA 	6
----------------------GAGAGCACGCCGGAATGCGTTC 	1
-------------------------AGCACGCCGGAATGCGTTC 	1
--------------------------------CGGAATGCGTTCATGCAGC 	1
------------------------------------------------AGCGAGTGCCTGGAGGTGTTCGAGC 	1
-------------------------------------------------GCGAGTGCCTGGAGGTGTTCGAGC 	1
--------------------------------------------------CGAGTGCCTGGAGGTGTTCGAGC 	1
------------------------------------------------------TGCCTGGAGGTGTTCGAGC 	1
--------------------------------------------------------------------CGAGCGTGCCCTCTCCCGTCG 	2
------------------------------------------------------------------------CGTGCCCTCTCCCGTCGTCAC 	1
------------------------------------------------------------------------CGTGCCCTCTCCCGTCGTCACC 	2
-------------------------------------------------------------------------GTGCCCTCTCCCGTCGTCACC 	548
-------------------------------------------------------------------------GTGCCCTCTCCCGTCGTCAC 	36
-------------------------------------------------------------------------GTGCCCTCTCCCGTCGTCACCA 	5
-------------------------------------------------------------------------GTGCCCTCTCCCGTCGTCA 	2
--------------------------------------------------------------------------TGCCCTCTCCCGTCGTCACC 	19
--------------------------------------------------------------------------TGCCCTCTCCCGTCGTCAC 	2


Overlaps with: MNEST039521 MNEST051423
Overlaps with miRBase pre-miRNAs: ppt-MIR535d
HuntMi prediction: true miRNA