miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGACAACGAGAGAGAGCACGC

selected species: Vitis vinifera



8 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Vitis vinifera GSM458927 TGACAACGAGAGAGAGCACGC GTGCTCTCTGTCGCTGTCATA up 2 0


Secondary structure

ATGTAATTGCTTGACAACGAGAGAGAGCACGCTAGTCTGCATTCATGCGAGGAACATGACTGTGTACAGGCGTGCTCTCTGTCGCTGTCATACAATCTTC
---------CTTGACAACGAGAGAGAGCA 	1
----------TTGACAACGAGAGAGAGCACG 	1
-----------TGACAACGAGAGAGAGCACGC 	62
-----------TGACAACGAGAGAGAGCACG 	3
-----------TGACAACGAGAGAGAGCAC 	1
----------------ACGAGAGAGAGCACGCTAGTC 	2
----------------ACGAGAGAGAGCACGCTAG 	2
-----------------------------------------------------------------------GTGCTCTCTGTCGCTGTCATA 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Vitis vinifera GSM458927 TGACAACGAGAGAGAGCACGC GTGCTCTCTCTCGCTGTCATA up 1 0


Secondary structure

ATGTAATTGCTTGACAACGAGAGAGAGCACGCTAGTCAGCATTCATGCGAGGAACATGACTGTGTACAGGCGTGCTCTCTCTCGCTGTCATACAATCTTC
---------CTTGACAACGAGAGAGAGCA 	1
----------TTGACAACGAGAGAGAGCACG 	1
-----------TGACAACGAGAGAGAGCACGC 	62
-----------TGACAACGAGAGAGAGCACG 	3
-----------TGACAACGAGAGAGAGCAC 	1
----------------ACGAGAGAGAGCACGCTAGTC 	2
----------------ACGAGAGAGAGCACGCTAG 	2
-----------------------------------------------------------------------GTGCTCTCTCTCGCTGTCATA 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Vitis vinifera GSM458930-2718 TGACAACGAGAGAGAGCACGC GTGCTCTCTCTCGCTGTCATA up 1 0


Secondary structure

ATGTAATTGCTTGACAACGAGAGAGAGCACGCTAGTCAGCATTCATGCGAGGAACATGACTGTGTACAGGCGTGCTCTCTCTCGCTGTCATACAATCTTC
---------CTTGACAACGAGAGAGAGCAC 	1
-----------TGACAACGAGAGAGAGCACGCT 	1
-----------TGACAACGAGAGAGAGCACGC 	160
-----------TGACAACGAGAGAGAGCACG 	5
-----------TGACAACGAGAGAGAGCAC 	5
------------GACAACGAGAGAGAGCACGCT 	1
------------GACAACGAGAGAGAGCACGC 	1
----------------ACGAGAGAGAGCACGCTAGTC 	7
----------------ACGAGAGAGAGCACGCTAG 	2



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Vitis vinifera GSM458930-2718 TGACAACGAGAGAGAGCACGC GTGCTCTCTGTCGCTGTCATA up 2 0


Secondary structure

ATGTAATTGCTTGACAACGAGAGAGAGCACGCTAGTCTGCATTCATGCGAGGAACATGACTGTGTACAGGCGTGCTCTCTGTCGCTGTCATACAATCTTC
---------CTTGACAACGAGAGAGAGCAC 	1
-----------TGACAACGAGAGAGAGCACGCT 	1
-----------TGACAACGAGAGAGAGCACGC 	160
-----------TGACAACGAGAGAGAGCACG 	5
-----------TGACAACGAGAGAGAGCAC 	5
------------GACAACGAGAGAGAGCACGCT 	1
------------GACAACGAGAGAGAGCACGC 	1
----------------ACGAGAGAGAGCACGCTAGTC 	7
----------------ACGAGAGAGAGCACGCTAG 	2



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Vitis vinifera GSM458929-2717 TGACAACGAGAGAGAGCACGC GTGCTCTCTGTCGCTGTCATA up 2 0


Secondary structure

ATGTAATTGCTTGACAACGAGAGAGAGCACGCTAGTCTGCATTCATGCGAGGAACATGACTGTGTACAGGCGTGCTCTCTGTCGCTGTCATACAATCTTC
---------CTTGACAACGAGAGAGAGCAC 	3
----------TTGACAACGAGAGAGAGCACG 	1
----------TTGACAACGAGAGAGAGCAC 	1
-----------TGACAACGAGAGAGAGCACGCT 	6
-----------TGACAACGAGAGAGAGCACGC 	276
-----------TGACAACGAGAGAGAGCACG 	8
-----------TGACAACGAGAGAGAGCAC 	14
------------GACAACGAGAGAGAGCACGCT 	1
------------GACAACGAGAGAGAGCACGC 	1
-------------ACAACGAGAGAGAGCACGCTAGT 	1
----------------ACGAGAGAGAGCACGCTAGTCT 	1
----------------ACGAGAGAGAGCACGCTAGTC 	9
----------------ACGAGAGAGAGCACGCTAG 	2
-----------------------------------------------------------------------GTGCTCTCTGTCGCTGTCATA 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Vitis vinifera GSM458929-2717 TGACAACGAGAGAGAGCACGC GTGCTCTCTCTCGCTGTCATA up 1 0


Secondary structure

ATGTAATTGCTTGACAACGAGAGAGAGCACGCTAGTCAGCATTCATGCGAGGAACATGACTGTGTACAGGCGTGCTCTCTCTCGCTGTCATACAATCTTC
---------CTTGACAACGAGAGAGAGCAC 	3
----------TTGACAACGAGAGAGAGCACG 	1
----------TTGACAACGAGAGAGAGCAC 	1
-----------TGACAACGAGAGAGAGCACGCT 	6
-----------TGACAACGAGAGAGAGCACGC 	276
-----------TGACAACGAGAGAGAGCACG 	8
-----------TGACAACGAGAGAGAGCAC 	14
------------GACAACGAGAGAGAGCACGCT 	1
------------GACAACGAGAGAGAGCACGC 	1
-------------ACAACGAGAGAGAGCACGCTAGT 	1
----------------ACGAGAGAGAGCACGCTAGTC 	9
----------------ACGAGAGAGAGCACGCTAG 	2



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Vitis vinifera GSM458928-2716 TGACAACGAGAGAGAGCACGC GTGCTCTCTGTCGCTGTCATA up 2 0


Secondary structure

ATGTAATTGCTTGACAACGAGAGAGAGCACGCTAGTCTGCATTCATGCGAGGAACATGACTGTGTACAGGCGTGCTCTCTGTCGCTGTCATACAATCTTC
---------CTTGACAACGAGAGAGAGCAC 	1
----------TTGACAACGAGAGAGAGCACGCT 	1
----------TTGACAACGAGAGAGAGCACGC 	2
-----------TGACAACGAGAGAGAGCACGCT 	6
-----------TGACAACGAGAGAGAGCACGC 	287
-----------TGACAACGAGAGAGAGCACG 	12
-----------TGACAACGAGAGAGAGCAC 	11
------------GACAACGAGAGAGAGCACGCT 	1
------------GACAACGAGAGAGAGCACGC 	1
-------------ACAACGAGAGAGAGCACGC 	1
--------------CAACGAGAGAGAGCACGCTAG 	1
----------------ACGAGAGAGAGCACGCTAGTC 	2
----------------------------------------------------------ACTGTGTACAGGCGTGCTCTC 	1
-----------------------------------------------------------------------GTGCTCTCTGTCGCTGTCATA 	2



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Vitis vinifera GSM458928-2716 TGACAACGAGAGAGAGCACGC GTGCTCTCTCTCGCTGTCATA up 1 0


Secondary structure

ATGTAATTGCTTGACAACGAGAGAGAGCACGCTAGTCAGCATTCATGCGAGGAACATGACTGTGTACAGGCGTGCTCTCTCTCGCTGTCATACAATCTTC
---------CTTGACAACGAGAGAGAGCAC 	1
----------TTGACAACGAGAGAGAGCACGCT 	1
----------TTGACAACGAGAGAGAGCACGC 	2
-----------TGACAACGAGAGAGAGCACGCT 	6
-----------TGACAACGAGAGAGAGCACGC 	287
-----------TGACAACGAGAGAGAGCACG 	12
-----------TGACAACGAGAGAGAGCAC 	11
------------GACAACGAGAGAGAGCACGCT 	1
------------GACAACGAGAGAGAGCACGC 	1
-------------ACAACGAGAGAGAGCACGC 	1
--------------CAACGAGAGAGAGCACGCTAG 	1
----------------ACGAGAGAGAGCACGCTAGTCA 	1
----------------ACGAGAGAGAGCACGCTAGTC 	2
----------------------------------------------------------ACTGTGTACAGGCGTGCTCTC 	1



HuntMi prediction: true miRNA