miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TGACAGAAGAGAGTGAGCAC

selected species: Brachypodium distachyon



14 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Brachypodium distachyon GSM506620-12051 TGACAGAAGAGAGTGAGCAC GCTCACTGCTCTGTCTGTCACC up 0 2


Secondary structure

TGTGCGCGCGGTGACAGAAGAGAGTGAGCACACGGCCGGGCGGGACGGCACCCGGCGGATTGGTGCCGTCGCGGCCGCGTGCTCACTGCTCTGTCTGTCACCTTTGCCCA
-----------TGACAGAAGAGAGTGAGCAC 	46
-------------------------------------------------------------------------------TGCTCACTGCTCTGTCTGTCAC 	2
--------------------------------------------------------------------------------GCTCACTGCTCTGTCTGTCACC 	7


Overlaps with: MNEST041729
Overlaps with miRBase pre-miRNAs: bdi-MIR156d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Brachypodium distachyon GSM506620-12051 TGACAGAAGAGAGTGAGCAC GCTCACCCTCTCTCTGTCAGC up 1 1


Secondary structure

GTCAGAACGGCTGACAGAAGAGAGTGAGCACACAGCGGCAGCCTGCATCTGGAGCTAAAGACGATGATGTGTCGATGCATGTGAAGAAGGGGAAAAGAGATAGGCGCAGCTGCTGTTGCGTGCTCACCCTCTCTCTGTCAGCTCTCCTCT
-------CGGCTGACAGAAGAGAGTGAG 	1
----------CTGACAGAAGAGAGTGAGCAC 	1
-----------TGACAGAAGAGAGTGAGCAC 	46
-------------------------------------------------------------------------------------------------------------------------GCTCACCCTCTCTCTGTCAGC 	21



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Brachypodium distachyon GSM506620-12051 TGACAGAAGAGAGTGAGCAC GCTCACTTCTCTCTCTGTCAGC up 0 2


Secondary structure

GAGATGGAGGCTGACAGAAGAGAGTGAGCACACATGGTGCCTTTCTTGCATGGTGAATCAGAGAGAGGGAGAAAGAGCGTTCATGCTTGAAGCTATGTGTGCTCACTTCTCTCTCTGTCAGCCATTACTT
----------CTGACAGAAGAGAGTGAGCAC 	1
-----------TGACAGAAGAGAGTGAGCAC 	46
-------------------------------------------------------------------------------------------------TGTGCTCACTTCTCTCTCTGTC 	1
---------------------------------------------------------------------------------------------------TGCTCACTTCTCTCTCTGTCAGC 	2
----------------------------------------------------------------------------------------------------GCTCACTTCTCTCTCTGTCAGC 	23



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Brachypodium distachyon GSM506620-12051 TGACAGAAGAGAGTGAGCAC GCTCACCCTCTCTCTGTCAGC up 1 1


Secondary structure

CAGATGGAGGGGAGCTGGGTCTTTGGAGGTTTGACAGAAGAGAGTGAGCACACGCGGTGGTTTCCTAGCATGCAGGAGCCATGCTGGGAGCTGCGCGTGCTCACCCTCTCTCTGTCAGCCGTTCACCATGCCCCATATCCCTTTTAG
------------------------------TTGACAGAAGAGAGTGAGCACA 	1
------------------------------TTGACAGAAGAGAGTGAGCAC 	39
-------------------------------TGACAGAAGAGAGTGAGCAC 	46
--------------------------------------------------------------------------------------------------GCTCACCCTCTCTCTGTCAGC 	21



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Brachypodium distachyon GSM506620-12051 TGACAGAAGAGAGTGAGCAC GCTCACTTCTCTCTCTGTCACC up 0 2


Secondary structure

AAGGCTATGGGTGACAGAAGAGAGTGAGCACACAGCGGCCAGACTGCATCTATTCCTTCGGCGGCGGACACGGCCGGGCATGGCCGGCCATGGCATGGCATACACGAAAACGAATGATGCTGCTGCTGCTGCGTGCTCACTTCTCTCTCTGTCACCTCTCGCAC
-----------TGACAGAAGAGAGTGAGCAC 	46
--------------------------------------------------------------------------------------------------------------------------------------GCTCACTTCTCTCTCTGTCACC 	7


Overlaps with: MNEST041727
Overlaps with miRBase pre-miRNAs: bdi-MIR156b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Brachypodium distachyon GSM506620-12051 TGACAGAAGAGAGTGAGCAC GCTCACTGCTCTTCCTGTCATC up 0 2


Secondary structure

GCGCGCGGCGAGCGGTGTGCTGGGCAGGGCAAGGAATTGAGTGTATGGGCGGCTTGGGCGGTGACAGAAGAGAGTGAGCACACGGCCGGTCGTCACACGACGGCGCCGCCGTGTCGCGGCCGCGTGCTCACTGCTCTTCCTGTCATCCACTAGCTCTCTCCGATTCCATCCTTTTCCGCCTTCGCCCGAGCTAGCTAGCCCCGCC
-------------------------------------------------------------TGACAGAAGAGAGTGAGCAC 	46
-----------------------------------------------------------------------------------------------------------------------------GCTCACTGCTCTTCCTGTCATC 	5
-----------------------------------------------------------------------------------------------------------------------------GCTCACTGCTCTTCCTGTCA 	1
------------------------------------------------------------------------------------------------------------------------------CTCACTGCTCTTCCTGTCATC 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Brachypodium distachyon GSM506621-23192 TGACAGAAGAGAGTGAGCAC GCTCACTGCTCTGTCTGTCACC up 0 2


Secondary structure

TGTGCGCGCGGTGACAGAAGAGAGTGAGCACACGGCCGGGCGGGACGGCACCCGGCGGATTGGTGCCGTCGCGGCCGCGTGCTCACTGCTCTGTCTGTCACCTTTGCCCA
-----------TGACAGAAGAGAGTGAGCA 	17
-----------TGACAGAAGAGAGTGAGCACA 	5
-----------TGACAGAAGAGAGTGAGCAC 	5276
------------GACAGAAGAGAGTGAGCAC 	96
--------------------------------------------------------------------------------GCTCACTGCTCTGTCTGTCACC 	1


Overlaps with: MNEST041729
Overlaps with miRBase pre-miRNAs: bdi-MIR156d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Brachypodium distachyon GSM506621-23192 TGACAGAAGAGAGTGAGCAC GCTCACCCTCTCTCTGTCAGC up 1 1


Secondary structure

GTCAGAACGGCTGACAGAAGAGAGTGAGCACACAGCGGCAGCCTGCATCTGGAGCTAAAGACGATGATGTGTCGATGCATGTGAAGAAGGGGAAAAGAGATAGGCGCAGCTGCTGTTGCGTGCTCACCCTCTCTCTGTCAGCTCTCCTCT
----------CTGACAGAAGAGAGTGAGCAC 	116
-----------TGACAGAAGAGAGTGAGCA 	17
-----------TGACAGAAGAGAGTGAGCACA 	5
-----------TGACAGAAGAGAGTGAGCAC 	5276
------------GACAGAAGAGAGTGAGCAC 	96



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Brachypodium distachyon GSM506621-23192 TGACAGAAGAGAGTGAGCAC GCTCACTTCTCTCTCTGTCAGC up 0 2


Secondary structure

GAGATGGAGGCTGACAGAAGAGAGTGAGCACACATGGTGCCTTTCTTGCATGGTGAATCAGAGAGAGGGAGAAAGAGCGTTCATGCTTGAAGCTATGTGTGCTCACTTCTCTCTCTGTCAGCCATTACTT
----------CTGACAGAAGAGAGTGAGCAC 	116
-----------TGACAGAAGAGAGTGAGCA 	17
-----------TGACAGAAGAGAGTGAGCACA 	5
-----------TGACAGAAGAGAGTGAGCAC 	5276
------------GACAGAAGAGAGTGAGCAC 	96



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Brachypodium distachyon GSM506621-23192 TGACAGAAGAGAGTGAGCAC GCTCACCCTCTCTCTGTCAGC up 1 1


Secondary structure

CAGATGGAGGGGAGCTGGGTCTTTGGAGGTTTGACAGAAGAGAGTGAGCACACGCGGTGGTTTCCTAGCATGCAGGAGCCATGCTGGGAGCTGCGCGTGCTCACCCTCTCTCTGTCAGCCGTTCACCATGCCCCATATCCCTTTTAG
------------------------------TTGACAGAAGAGAGTGAGCAC 	4271
------------------------------TTGACAGAAGAGAGTGAGCA 	12
------------------------------TTGACAGAAGAGAGTGAGC 	1
-------------------------------TGACAGAAGAGAGTGAGCA 	17
-------------------------------TGACAGAAGAGAGTGAGCACA 	5
-------------------------------TGACAGAAGAGAGTGAGCAC 	5276
--------------------------------GACAGAAGAGAGTGAGCAC 	96



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Brachypodium distachyon GSM506621-23192 TGACAGAAGAGAGTGAGCAC GCTCACTGCTCTATCTGTCAGC up 0 2


Secondary structure

GCCGATTACATGTGTGATGTGCAGAAGAGAAATGGTGTCGTGAGTGGAAGCTGACAGAAGAGAGTGAGCACCCATGGTGTTTCGTTTGCATCAAGGACATGCCAGGGAGCTATGCGTGCTCACTGCTCTATCTGTCAGCCAGCCACTGATGAGGCTTCATTTCTCCCATGCGATCACACGCAGCTGT
--------------------------------------------------CTGACAGAAGAGAGTGAGCAC 	116
---------------------------------------------------TGACAGAAGAGAGTGAGCA 	17
---------------------------------------------------TGACAGAAGAGAGTGAGCACC 	2
---------------------------------------------------TGACAGAAGAGAGTGAGCAC 	5276
----------------------------------------------------GACAGAAGAGAGTGAGCAC 	96



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Brachypodium distachyon GSM506621-23192 TGACAGAAGAGAGTGAGCAC GCTCACTCCTCTTTCTGTCAGC up 1 2


Secondary structure

CCTCGAGAGATTGACAGAAGAGAGTGAGCACACGGCGTGATGTCCGGCATATGTATGCCGTCGTCGCCGCGTGCTCACTCCTCTTTCTGTCAGCCTCTTTCT
------GAGATTGACAGAAGAGAGTGAGC 	1
-------AGATTGACAGAAGAGAGTGAGCAC 	1
--------GATTGACAGAAGAGAGTGAGCAC 	21
---------ATTGACAGAAGAGAGTGAGCAC 	23
----------TTGACAGAAGAGAGTGAGCAC 	4271
----------TTGACAGAAGAGAGTGAGCA 	12
----------TTGACAGAAGAGAGTGAGC 	1
-----------TGACAGAAGAGAGTGAGCA 	17
-----------TGACAGAAGAGAGTGAGCACA 	5
-----------TGACAGAAGAGAGTGAGCAC 	5276
------------GACAGAAGAGAGTGAGCAC 	96
------------------------------------------------------------------------GCTCACTCCTCTTTCTGTCAGCC 	6
------------------------------------------------------------------------GCTCACTCCTCTTTCTGTCAGC 	3


Overlaps with: MNEST003059
Overlaps with miRBase pre-miRNAs: bdi-MIR156c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Brachypodium distachyon GSM506621-23192 TGACAGAAGAGAGTGAGCAC GCTCACTTCTCTCTCTGTCACC up 0 2


Secondary structure

AAGGCTATGGGTGACAGAAGAGAGTGAGCACACAGCGGCCAGACTGCATCTATTCCTTCGGCGGCGGACACGGCCGGGCATGGCCGGCCATGGCATGGCATACACGAAAACGAATGATGCTGCTGCTGCTGCGTGCTCACTTCTCTCTCTGTCACCTCTCGCAC
-----------TGACAGAAGAGAGTGAGCA 	17
-----------TGACAGAAGAGAGTGAGCACA 	5
-----------TGACAGAAGAGAGTGAGCAC 	5276
------------GACAGAAGAGAGTGAGCAC 	96


Overlaps with: MNEST041727
Overlaps with miRBase pre-miRNAs: bdi-MIR156b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Brachypodium distachyon GSM506621-23192 TGACAGAAGAGAGTGAGCAC GCTCACTGCTCTTCCTGTCATC up 0 2


Secondary structure

GCGCGCGGCGAGCGGTGTGCTGGGCAGGGCAAGGAATTGAGTGTATGGGCGGCTTGGGCGGTGACAGAAGAGAGTGAGCACACGGCCGGTCGTCACACGACGGCGCCGCCGTGTCGCGGCCGCGTGCTCACTGCTCTTCCTGTCATCCACTAGCTCTCTCCGATTCCATCCTTTTCCGCCTTCGCCCGAGCTAGCTAGCCCCGCC
-------------------------------------------------------------TGACAGAAGAGAGTGAGCA 	17
-------------------------------------------------------------TGACAGAAGAGAGTGAGCACA 	5
-------------------------------------------------------------TGACAGAAGAGAGTGAGCAC 	5276
--------------------------------------------------------------GACAGAAGAGAGTGAGCAC 	96



HuntMi prediction: true miRNA