miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGACAGAAGAGAGTGAGCAC

selected species: Oryza sativa



104 records found  

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#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Oryza sativa GSM693280 TGACAGAAGAGAGTGAGCAC GCTCACTTCTCTCTCTGTCAGC up 0 2


Secondary structure

CCGCGGCTGGCTGACAGAAGAGAGTGAGCACACAGCGGGCAGACTGCATCTGAATTACCTGTTGCGACGAAGAAGACGACGGACGCAGCTTGCCGTTGCGTGCTCACTTCTCTCTCTGTCAGCTCTCTCTC
-------TGGCTGACAGAAGAGAGTGAG 	2
----------CTGACAGAAGAGAGTGAGCAC 	50
----------CTGACAGAAGAGAGTGAGCA 	2
-----------TGACAGAAGAGAGTGAGCACA 	151
-----------TGACAGAAGAGAGTGAGCAC 	59468
-----------TGACAGAAGAGAGTGAGCA 	94
------------GACAGAAGAGAGTGAGCAC 	141
------------GACAGAAGAGAGTGAGCACA 	2
-----------------------------------------------------ATTACCTGTTGCGACGAAGAAGAC 	1
-----------------------------------------------------------------------------------------------------GCTCACTTCTCTCTCTGTCAGC 	5



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Oryza sativa GSM693280 TGACAGAAGAGAGTGAGCAC GCTCGCTCCTCTTTCTGTCAGC up 1 2


Secondary structure

GCATATGAAAGGCGAGATTGTTGACAGAAGAGAGTGAGCACACGGCGCGGCGGCTAGCCATCGGCGGGATGCCTGCCCCCGCCGCGTGCTCGCTCCTCTTTCTGTCAGCATCTCTCATCACTCCCTC
--------------AGATTGTTGACAGAAGAGAGTG 	1
---------------GATTGTTGACAGAAGAGAGTGAG 	1
-----------------TTGTTGACAGAAGAGAGTGAG 	1
------------------TGTTGACAGAAGAGAGTGAGC 	2
------------------TGTTGACAGAAGAGAGTGAGCAC 	1
--------------------TTGACAGAAGAGAGTGAGCAC 	12889
--------------------TTGACAGAAGAGAGTGAGCA 	67
--------------------TTGACAGAAGAGAGTGAGC 	6
--------------------TTGACAGAAGAGAGTGAGCACA 	2
---------------------TGACAGAAGAGAGTGAGCACA 	151
---------------------TGACAGAAGAGAGTGAGCAC 	59468
---------------------TGACAGAAGAGAGTGAGCA 	94
----------------------GACAGAAGAGAGTGAGCAC 	141
----------------------GACAGAAGAGAGTGAGCACA 	2
--------------------------------------------------------------------------------------TGCTCGCTCCTCTTTCTGTCAG 	2
---------------------------------------------------------------------------------------GCTCGCTCCTCTTTCTGTCAGCA 	2
---------------------------------------------------------------------------------------GCTCGCTCCTCTTTCTGTCAGC 	2


Overlaps with: MNEST048813
Overlaps with miRBase pre-miRNAs: osa-MIR156j osa-MIR156h
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Oryza sativa GSM693280 TGACAGAAGAGAGTGAGCAC GCTCACTGCTCTTTCTGTCATC up 0 2


Secondary structure

GGGCGGGCCGGTGGCGCGAGGTGACAGAAGAGAGTGAGCACACGGCCGGGCGTGACGGCACCGGCGGGCGTGCCGTCGCGGCCGCGTGCTCACTGCTCTTTCTGTCATCCGGTGCCGGCCGTTTTCT
--------------------GTGACAGAAGAGAGTGAGCAC 	1
---------------------TGACAGAAGAGAGTGAGCACA 	151
---------------------TGACAGAAGAGAGTGAGCAC 	59468
---------------------TGACAGAAGAGAGTGAGCA 	94
----------------------GACAGAAGAGAGTGAGCAC 	141
----------------------GACAGAAGAGAGTGAGCACA 	2
--------------------------------------------------------------------------------------TGCTCACTGCTCTTTCTGTCATC 	2
---------------------------------------------------------------------------------------GCTCACTGCTCTTTCTGTCATC 	2


Overlaps with: MNEST041908 MNEST048805
Overlaps with miRBase pre-miRNAs: osa-MIR156e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Oryza sativa GSM693280 TGACAGAAGAGAGTGAGCAC GCTCACTCCTCTTTCTGTCACC up 1 2


Secondary structure

AATTTCTAGCACGGAGAAGCTCTCATGAGATTGACAGAAGAGAGTGAGCACACGGCGTGATGGCCGGCATAAAATCTATCCCGTCCTCGCCGCGTGCTCACTCCTCTTTCTGTCACCCTCTTTCTCTCAGGGCTCAACTCCTATC
-----------------------------ATTGACAGAAGAGAGTGAGCAC 	17
------------------------------TTGACAGAAGAGAGTGAGCAC 	12889
------------------------------TTGACAGAAGAGAGTGAGCA 	67
------------------------------TTGACAGAAGAGAGTGAGC 	6
------------------------------TTGACAGAAGAGAGTGAGCACA 	2
-------------------------------TGACAGAAGAGAGTGAGCACA 	151
-------------------------------TGACAGAAGAGAGTGAGCAC 	59468
-------------------------------TGACAGAAGAGAGTGAGCA 	94
--------------------------------GACAGAAGAGAGTGAGCAC 	141
--------------------------------GACAGAAGAGAGTGAGCACA 	2
----------------------------------CAGAAGAGAGTGAGCACACGGCGT 	1
-----------------------------------------------------------------------------------------------GCTCACTCCTCTTTCTGTCACC 	1


Overlaps with: MNEST041907 MNEST048804
Overlaps with miRBase pre-miRNAs: osa-MIR156d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Oryza sativa GSM693280 TGACAGAAGAGAGTGAGCAC GCTCACTGCTCTGTCTGTCATC up 0 2


Secondary structure

GCCGGTGCGGGCGCTGGGCGGTGACAGAAGAGAGTGAGCACACGGCCGGGCGGAACGGCACCGGCGGATGTGCCGTCGCGGCCGCGTGCTCACTGCTCTGTCTGTCATCCACTCCTCTCCCACCCCC
--------------------GTGACAGAAGAGAGTGAGCAC 	1
---------------------TGACAGAAGAGAGTGAGCACA 	151
---------------------TGACAGAAGAGAGTGAGCAC 	59468
---------------------TGACAGAAGAGAGTGAGCA 	94
----------------------GACAGAAGAGAGTGAGCAC 	141
----------------------GACAGAAGAGAGTGAGCACA 	2
-----------------------------------------ACGGCCGGGCGGAACGGCACC 	2
--------------------------------------------------------------------------------------TGCTCACTGCTCTGTCTGTCATC 	3
---------------------------------------------------------------------------------------GCTCACTGCTCTGTCTGTCATC 	6
---------------------------------------------------------------------------------------GCTCACTGCTCTGTCTGTCA 	1


Overlaps with: MNEST041912 MNEST048809
Overlaps with miRBase pre-miRNAs: osa-MIR156i
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Oryza sativa GSM693280 TGACAGAAGAGAGTGAGCAC GCTCACTTCTCTCTCTGTCAGC up 0 2


Secondary structure

TTAGGAGGAAGAGAGGGGTGAGAGGTGAGGCTGACAGAAGAGAGTGAGCACACATGGTGACTTTCTTGCATGCTGAATGGACTCATGCTTGAAGCTATGTGTGCTCACTTCTCTCTCTGTCAGCCATTTGATCTCTCTTTCTCTCTTTCTCC
------------------------------CTGACAGAAGAGAGTGAGCAC 	50
------------------------------CTGACAGAAGAGAGTGAGCA 	2
-------------------------------TGACAGAAGAGAGTGAGCACA 	151
-------------------------------TGACAGAAGAGAGTGAGCAC 	59468
-------------------------------TGACAGAAGAGAGTGAGCA 	94
--------------------------------GACAGAAGAGAGTGAGCAC 	141
--------------------------------GACAGAAGAGAGTGAGCACA 	2
------------------------------------------------------------------------------------------------------GCTCACTTCTCTCTCTGTCAGC 	5



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Oryza sativa GSM693280 TGACAGAAGAGAGTGAGCAC GCTCACTCTCTATCTGTCAGC up 0 1


Secondary structure

TCAGTTAATTTGTCTTGAGAGGGGAAGAGATCTCTATGGGTTTTGGAGGTCTGACAGAAGAGAGTGAGCACACACGGTGCTTTCTTAGCATGCAAGAGCCATGCTGGGAGCTGTGCGTGCTCACTCTCTATCTGTCAGCCGTTCACCATGCCCAATATGATTAATCTCCTTCTCTCAGTTGACAGTA
-------------------------------------------TGGAGGTCTGACAGAAGAGAG 	1
-------------------------------------------------TCTGACAGAAGAGAGTGAGCAC 	6
--------------------------------------------------CTGACAGAAGAGAGTGAGCAC 	50
--------------------------------------------------CTGACAGAAGAGAGTGAGCA 	2
---------------------------------------------------TGACAGAAGAGAGTGAGCACA 	151
---------------------------------------------------TGACAGAAGAGAGTGAGCAC 	59468
---------------------------------------------------TGACAGAAGAGAGTGAGCA 	94
----------------------------------------------------GACAGAAGAGAGTGAGCAC 	141
----------------------------------------------------GACAGAAGAGAGTGAGCACA 	2
----------------------------------------------------------------------------------------------------------------------GCTCACTCTCTATCTGTCAGC 	1


Overlaps with: MNEST049442
Overlaps with miRBase pre-miRNAs: osa-MIR156b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Oryza sativa GSM693280 TGACAGAAGAGAGTGAGCAC GCTCACTTCTCTCTCTGTCACC up 0 2


Secondary structure

TACTAGGAGGGTGACAGAAGAGAGTGAGCACACGTGGTTGTTTCCTTGCATAAATGATGCCTATGCTTGGAGCTACGCGTGCTCACTTCTCTCTCTGTCACCTCCACCCC
----------GTGACAGAAGAGAGTGAGCAC 	1
-----------TGACAGAAGAGAGTGAGCACA 	151
-----------TGACAGAAGAGAGTGAGCAC 	59468
-----------TGACAGAAGAGAGTGAGCA 	94
------------GACAGAAGAGAGTGAGCAC 	141
------------GACAGAAGAGAGTGAGCACA 	2


Overlaps with: MNEST041904 MNEST048801 MNEST049326
Overlaps with miRBase pre-miRNAs: osa-MIR156a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Oryza sativa GSM571078-22531 TGACAGAAGAGAGTGAGCAC GCTCACTTCTCTCTCTGTCAGC up 0 2


Secondary structure

CCGCGGCTGGCTGACAGAAGAGAGTGAGCACACAGCGGGCAGACTGCATCTGAATTACCTGTTGCGACGAAGAAGACGACGGACGCAGCTTGCCGTTGCGTGCTCACTTCTCTCTCTGTCAGCTCTCTCTC
----------CTGACAGAAGAGAGTGAGCAC 	694
----------CTGACAGAAGAGAGTGAGCA 	6
----------CTGACAGAAGAGAGTGAGC 	1
-----------TGACAGAAGAGAGTGAGCACA 	363
-----------TGACAGAAGAGAGTGAGCAC 	150817
-----------TGACAGAAGAGAGTGAGCA 	627
------------GACAGAAGAGAGTGAGCACA 	55
------------GACAGAAGAGAGTGAGCAC 	5086
-------------ACAGAAGAGAGTGAGCACA 	18
-------------ACAGAAGAGAGTGAGCACAC 	1
--------------------AGAGTGAGCACACAGCGGGCAG 	2
-----------------------------------------------------------------------------------------------------GCTCACTTCTCTCTCTGTCAGC 	7



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Oryza sativa GSM571078-22531 TGACAGAAGAGAGTGAGCAC GCTCGCTCCTCTTTCTGTCAGC up 1 2


Secondary structure

GCATATGAAAGGCGAGATTGTTGACAGAAGAGAGTGAGCACACGGCGCGGCGGCTAGCCATCGGCGGGATGCCTGCCCCCGCCGCGTGCTCGCTCCTCTTTCTGTCAGCATCTCTCATCACTCCCTC
--------------AGATTGTTGACAGAAGAGAGTG 	1
---------------GATTGTTGACAGAAGAGAGTGAG 	2
---------------GATTGTTGACAGAAGAGAGTG 	1
-----------------TTGTTGACAGAAGAGAGTGAG 	2
------------------TGTTGACAGAAGAGAGTGAGC 	5
------------------TGTTGACAGAAGAGAGTGAG 	2
------------------TGTTGACAGAAGAGAGTGAGCAC 	1
--------------------TTGACAGAAGAGAGTGAGCACA 	20
--------------------TTGACAGAAGAGAGTGAGCAC 	71458
--------------------TTGACAGAAGAGAGTGAGCA 	289
--------------------TTGACAGAAGAGAGTGAGC 	127
--------------------TTGACAGAAGAGAGTGAGCACAC 	1
---------------------TGACAGAAGAGAGTGAGCACA 	363
---------------------TGACAGAAGAGAGTGAGCAC 	150817
---------------------TGACAGAAGAGAGTGAGCA 	627
----------------------GACAGAAGAGAGTGAGCACA 	55
----------------------GACAGAAGAGAGTGAGCAC 	5086
-----------------------ACAGAAGAGAGTGAGCACA 	18
-----------------------ACAGAAGAGAGTGAGCACAC 	1
--------------------------GAAGAGAGTGAGCACACGGCG 	1
--------------------------------------------------------------------------------------TGCTCGCTCCTCTTTCTGTCAG 	5
--------------------------------------------------------------------------------------TGCTCGCTCCTCTTTCTGTCAGC 	1
---------------------------------------------------------------------------------------GCTCGCTCCTCTTTCTGTCAGCA 	4
---------------------------------------------------------------------------------------GCTCGCTCCTCTTTCTGTCAGC 	4
---------------------------------------------------------------------------------------GCTCGCTCCTCTTTCTGTCAG 	3


Overlaps with: MNEST048813
Overlaps with miRBase pre-miRNAs: osa-MIR156j osa-MIR156h
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Oryza sativa GSM571078-22531 TGACAGAAGAGAGTGAGCAC GCTCACTGCTCTTTCTGTCATC up 0 2


Secondary structure

GGGCGGGCCGGTGGCGCGAGGTGACAGAAGAGAGTGAGCACACGGCCGGGCGTGACGGCACCGGCGGGCGTGCCGTCGCGGCCGCGTGCTCACTGCTCTTTCTGTCATCCGGTGCCGGCCGTTTTCT
--------------------GTGACAGAAGAGAGTGAGCAC 	25
--------------------GTGACAGAAGAGAGTGAGCA 	1
---------------------TGACAGAAGAGAGTGAGCACA 	363
---------------------TGACAGAAGAGAGTGAGCAC 	150817
---------------------TGACAGAAGAGAGTGAGCA 	627
----------------------GACAGAAGAGAGTGAGCACA 	55
----------------------GACAGAAGAGAGTGAGCAC 	5086
-----------------------ACAGAAGAGAGTGAGCACA 	18
-----------------------ACAGAAGAGAGTGAGCACAC 	1


Overlaps with: MNEST041908 MNEST048805
Overlaps with miRBase pre-miRNAs: osa-MIR156e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Oryza sativa GSM571078-22531 TGACAGAAGAGAGTGAGCAC GCTCACTGCTCTGTCTGTCATC up 0 2


Secondary structure

GCCGGTGCGGGCGCTGGGCGGTGACAGAAGAGAGTGAGCACACGGCCGGGCGGAACGGCACCGGCGGATGTGCCGTCGCGGCCGCGTGCTCACTGCTCTGTCTGTCATCCACTCCTCTCCCACCCCC
--------------------GTGACAGAAGAGAGTGAGCAC 	25
--------------------GTGACAGAAGAGAGTGAGCA 	1
---------------------TGACAGAAGAGAGTGAGCACA 	363
---------------------TGACAGAAGAGAGTGAGCAC 	150817
---------------------TGACAGAAGAGAGTGAGCA 	627
----------------------GACAGAAGAGAGTGAGCACA 	55
----------------------GACAGAAGAGAGTGAGCAC 	5086
-----------------------ACAGAAGAGAGTGAGCACA 	18
-----------------------ACAGAAGAGAGTGAGCACAC 	1
--------------------------------------------------------------------------------------TGCTCACTGCTCTGTCTGTCATC 	2
---------------------------------------------------------------------------------------GCTCACTGCTCTGTCTGTCATC 	5
----------------------------------------------------------------------------------------CTCACTGCTCTGTCTGTCATC 	1


Overlaps with: MNEST041912 MNEST048809
Overlaps with miRBase pre-miRNAs: osa-MIR156i
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Oryza sativa GSM571078-22531 TGACAGAAGAGAGTGAGCAC GCTCACTCCTCTTTCTGTCACC up 1 2


Secondary structure

AATTTCTAGCACGGAGAAGCTCTCATGAGATTGACAGAAGAGAGTGAGCACACGGCGTGATGGCCGGCATAAAATCTATCCCGTCCTCGCCGCGTGCTCACTCCTCTTTCTGTCACCCTCTTTCTCTCAGGGCTCAACTCCTATC
-------------------------TGAGATTGACAGAAGAGAGTGAGC 	1
-----------------------------ATTGACAGAAGAGAGTGAGCAC 	90
------------------------------TTGACAGAAGAGAGTGAGCACA 	20
------------------------------TTGACAGAAGAGAGTGAGCAC 	71458
------------------------------TTGACAGAAGAGAGTGAGCA 	289
------------------------------TTGACAGAAGAGAGTGAGC 	127
------------------------------TTGACAGAAGAGAGTGAGCACAC 	1
-------------------------------TGACAGAAGAGAGTGAGCACA 	363
-------------------------------TGACAGAAGAGAGTGAGCAC 	150817
-------------------------------TGACAGAAGAGAGTGAGCA 	627
--------------------------------GACAGAAGAGAGTGAGCACA 	55
--------------------------------GACAGAAGAGAGTGAGCAC 	5086
---------------------------------ACAGAAGAGAGTGAGCACA 	18
---------------------------------ACAGAAGAGAGTGAGCACAC 	1
------------------------------------GAAGAGAGTGAGCACACGGCG 	1
-----------------------------------------------------------------------------------------------GCTCACTCCTCTTTCTGTCACC 	16
-----------------------------------------------------------------------------------------------GCTCACTCCTCTTTCTGTCACCC 	4


Overlaps with: MNEST041907 MNEST048804
Overlaps with miRBase pre-miRNAs: osa-MIR156d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Oryza sativa GSM571078-22531 TGACAGAAGAGAGTGAGCAC GCTCACTCTCTATCTGTCAGC up 0 1


Secondary structure

TCAGTTAATTTGTCTTGAGAGGGGAAGAGATCTCTATGGGTTTTGGAGGTCTGACAGAAGAGAGTGAGCACACACGGTGCTTTCTTAGCATGCAAGAGCCATGCTGGGAGCTGTGCGTGCTCACTCTCTATCTGTCAGCCGTTCACCATGCCCAATATGATTAATCTCCTTCTCTCAGTTGACAGTA
-------------------------------------------TGGAGGTCTGACAGAAGAGAG 	1
----------------------------------------------AGGTCTGACAGAAGAGAGTGA 	1
-------------------------------------------------TCTGACAGAAGAGAGTGAGCAC 	23
--------------------------------------------------CTGACAGAAGAGAGTGAGCAC 	694
--------------------------------------------------CTGACAGAAGAGAGTGAGCA 	6
--------------------------------------------------CTGACAGAAGAGAGTGAGC 	1
---------------------------------------------------TGACAGAAGAGAGTGAGCACA 	363
---------------------------------------------------TGACAGAAGAGAGTGAGCAC 	150817
---------------------------------------------------TGACAGAAGAGAGTGAGCA 	627
----------------------------------------------------GACAGAAGAGAGTGAGCACA 	55
----------------------------------------------------GACAGAAGAGAGTGAGCAC 	5086
-----------------------------------------------------ACAGAAGAGAGTGAGCACA 	18
-----------------------------------------------------ACAGAAGAGAGTGAGCACAC 	1
----------------------------------------------------------------------------------------------------------------------GCTCACTCTCTATCTGTCAGC 	16
-----------------------------------------------------------------------------------------------------------------------CTCACTCTCTATCTGTCAGC 	1


Overlaps with: MNEST049442
Overlaps with miRBase pre-miRNAs: osa-MIR156b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Oryza sativa GSM571078-22531 TGACAGAAGAGAGTGAGCAC GCTCACTTCTCTCTCTGTCAGC up 0 2


Secondary structure

TTAGGAGGAAGAGAGGGGTGAGAGGTGAGGCTGACAGAAGAGAGTGAGCACACATGGTGACTTTCTTGCATGCTGAATGGACTCATGCTTGAAGCTATGTGTGCTCACTTCTCTCTCTGTCAGCCATTTGATCTCTCTTTCTCTCTTTCTCC
---------------------------AGGCTGACAGAAGAGAGTGAGCAC 	1
------------------------------CTGACAGAAGAGAGTGAGCAC 	694
------------------------------CTGACAGAAGAGAGTGAGCA 	6
------------------------------CTGACAGAAGAGAGTGAGC 	1
-------------------------------TGACAGAAGAGAGTGAGCACA 	363
-------------------------------TGACAGAAGAGAGTGAGCAC 	150817
-------------------------------TGACAGAAGAGAGTGAGCA 	627
--------------------------------GACAGAAGAGAGTGAGCACA 	55
--------------------------------GACAGAAGAGAGTGAGCAC 	5086
---------------------------------ACAGAAGAGAGTGAGCACA 	18
---------------------------------ACAGAAGAGAGTGAGCACAC 	1
-----------------------------------------------------------------------------TGGACTCATGCTTGAAGCTAT 	1
------------------------------------------------------------------------------------------------------GCTCACTTCTCTCTCTGTCAGC 	7



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Oryza sativa GSM571078-22531 TGACAGAAGAGAGTGAGCAC GCTCACTTCTCTCTCTGTCACC up 0 2


Secondary structure

TACTAGGAGGGTGACAGAAGAGAGTGAGCACACGTGGTTGTTTCCTTGCATAAATGATGCCTATGCTTGGAGCTACGCGTGCTCACTTCTCTCTCTGTCACCTCCACCCC
----------GTGACAGAAGAGAGTGAGCAC 	25
----------GTGACAGAAGAGAGTGAGCA 	1
-----------TGACAGAAGAGAGTGAGCACA 	363
-----------TGACAGAAGAGAGTGAGCAC 	150817
-----------TGACAGAAGAGAGTGAGCA 	627
------------GACAGAAGAGAGTGAGCACA 	55
------------GACAGAAGAGAGTGAGCAC 	5086
-------------ACAGAAGAGAGTGAGCACA 	18
-------------ACAGAAGAGAGTGAGCACAC 	1


Overlaps with: MNEST041904 MNEST048801 MNEST049326
Overlaps with miRBase pre-miRNAs: osa-MIR156a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Oryza sativa GSM520638-18676 TGACAGAAGAGAGTGAGCAC GCTCACTTCTCTCTCTGTCAGC up 0 2


Secondary structure

CCGCGGCTGGCTGACAGAAGAGAGTGAGCACACAGCGGGCAGACTGCATCTGAATTACCTGTTGCGACGAAGAAGACGACGGACGCAGCTTGCCGTTGCGTGCTCACTTCTCTCTCTGTCAGCTCTCTCTC
----------CTGACAGAAGAGAGTGAGCAC 	14
-----------TGACAGAAGAGAGTGAGCACA 	49
-----------TGACAGAAGAGAGTGAGCAC 	2745
-----------TGACAGAAGAGAGTGAGCA 	49
------------GACAGAAGAGAGTGAGCACA 	45
------------GACAGAAGAGAGTGAGCAC 	24
-------------ACAGAAGAGAGTGAGCACA 	5
-------------ACAGAAGAGAGTGAGCACAC 	1
-----------------------------------------------------------------------------------------------------GCTCACTTCTCTCTCTGTCAGC 	20



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
18 Oryza sativa GSM520638-18676 TTGACAGAAGAGAGTGAGCAC GCTCGCTCCTCTTTCTGTCAGCA up 1 2


Secondary structure

GTGCAGGTTTGTTGATCGATCTTGGGGCGGGGCGGGATCGAGCATATGAAAGGCGAGATTGTTGACAGAAGAGAGTGAGCACACGGCGCGGCGGCTAGCCATCGGCGGGATGCCTGCCCCCGCCGCGTGCTCGCTCCTCTTTCTGTCAGCATCTCTCATCACTCCCTCCCGCATCCCCCGCCCCGATCTCGCGTCGATCTCTCATCTCC
--------------------------------------------------------GATTGTTGACAGAAGAGAGTGAG 	1
----------------------------------------------------------TTGTTGACAGAAGAGAGTGAG 	1
------------------------------------------------------------GTTGACAGAAGAGAGTGAGCAC 	1
-------------------------------------------------------------TTGACAGAAGAGAGTGAGCACA 	2
-------------------------------------------------------------TTGACAGAAGAGAGTGAGCA 	77
-------------------------------------------------------------TTGACAGAAGAGAGTGAGC 	92
-------------------------------------------------------------TTGACAGAAGAGAGTGAGCAC 	7051
--------------------------------------------------------------TGACAGAAGAGAGTGAGCACA 	49
--------------------------------------------------------------TGACAGAAGAGAGTGAGCAC 	2745
--------------------------------------------------------------TGACAGAAGAGAGTGAGCA 	49
---------------------------------------------------------------GACAGAAGAGAGTGAGCACA 	45
---------------------------------------------------------------GACAGAAGAGAGTGAGCAC 	24
----------------------------------------------------------------ACAGAAGAGAGTGAGCACA 	5
----------------------------------------------------------------ACAGAAGAGAGTGAGCACAC 	1
----------------------------------------------------------------------GAGAGTGAGCACACGGCGCGG 	2
-------------------------------------------------------------------------------------------------------------------------------TGCTCGCTCCTCTTTCTGTCAG 	34
-------------------------------------------------------------------------------------------------------------------------------TGCTCGCTCCTCTTTCTGTC 	2
-------------------------------------------------------------------------------------------------------------------------------TGCTCGCTCCTCTTTCTGTCAGC 	5
--------------------------------------------------------------------------------------------------------------------------------GCTCGCTCCTCTTTCTGTCAGC 	34
--------------------------------------------------------------------------------------------------------------------------------GCTCGCTCCTCTTTCTGTCAGCA 	5
---------------------------------------------------------------------------------------------------------------------------------CTCGCTCCTCTTTCTGTCAGC 	1
-----------------------------------------------------------------------------------------------------------------------------------CGCTCCTCTTTCTGTCAGCATC 	1


Overlaps with: MNEST048813
Overlaps with miRBase pre-miRNAs: osa-MIR156j osa-MIR156h
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
19 Oryza sativa GSM520638-18676 TGACAGAAGAGAGTGAGCAC GCTCACTGCTCTTTCTGTCATC up 0 2


Secondary structure

GGGCGGGCCGGTGGCGCGAGGTGACAGAAGAGAGTGAGCACACGGCCGGGCGTGACGGCACCGGCGGGCGTGCCGTCGCGGCCGCGTGCTCACTGCTCTTTCTGTCATCCGGTGCCGGCCGTTTTCT
---------------------TGACAGAAGAGAGTGAGCACA 	49
---------------------TGACAGAAGAGAGTGAGCAC 	2745
---------------------TGACAGAAGAGAGTGAGCA 	49
----------------------GACAGAAGAGAGTGAGCACA 	45
----------------------GACAGAAGAGAGTGAGCAC 	24
-----------------------ACAGAAGAGAGTGAGCACA 	5
-----------------------ACAGAAGAGAGTGAGCACAC 	1
---------------------------------------------------------------------------------------GCTCACTGCTCTTTCTGTCATC 	2


Overlaps with: MNEST041908 MNEST048805
Overlaps with miRBase pre-miRNAs: osa-MIR156e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
20 Oryza sativa GSM520638-18676 TGACAGAAGAGAGTGAGCAC GCTCACTGCTCTGTCTGTCATC up 0 2


Secondary structure

GCCGGTGCGGGCGCTGGGCGGTGACAGAAGAGAGTGAGCACACGGCCGGGCGGAACGGCACCGGCGGATGTGCCGTCGCGGCCGCGTGCTCACTGCTCTGTCTGTCATCCACTCCTCTCCCACCCCC
---------------------TGACAGAAGAGAGTGAGCACA 	49
---------------------TGACAGAAGAGAGTGAGCAC 	2745
---------------------TGACAGAAGAGAGTGAGCA 	49
----------------------GACAGAAGAGAGTGAGCACA 	45
----------------------GACAGAAGAGAGTGAGCAC 	24
-----------------------ACAGAAGAGAGTGAGCACA 	5
-----------------------ACAGAAGAGAGTGAGCACAC 	1
--------------------------------------------------------------------------------------TGCTCACTGCTCTGTCTGTCATC 	8
---------------------------------------------------------------------------------------GCTCACTGCTCTGTCTGTCAT 	1
---------------------------------------------------------------------------------------GCTCACTGCTCTGTCTGTCATC 	15
---------------------------------------------------------------------------------------GCTCACTGCTCTGTCTGTCA 	1


Overlaps with: MNEST041912 MNEST048809
Overlaps with miRBase pre-miRNAs: osa-MIR156i
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
21 Oryza sativa GSM520638-18676 TTGACAGAAGAGAGTGAGCAC GCTCACTCCTCTTTCTGTCACCC up 2 2


Secondary structure

AAATTTCTAGCACGGAGAAGCTCTCATGAGATTGACAGAAGAGAGTGAGCACACGGCGTGATGGCCGGCATAAAATCTATCCCGTCCTCGCCGCGTGCTCACTCCTCTTTCTGTCACCCTCTTTCTCTCAGGGCTCAACTCCTATCC
-------------------------ATGAGATTGACAGAAGAGAGT 	1
------------------------------ATTGACAGAAGAGAGTGAGC 	2
------------------------------ATTGACAGAAGAGAGTGAGCAC 	16
-------------------------------TTGACAGAAGAGAGTGAGCACA 	2
-------------------------------TTGACAGAAGAGAGTGAGCA 	77
-------------------------------TTGACAGAAGAGAGTGAGC 	92
-------------------------------TTGACAGAAGAGAGTGAGCAC 	7051
--------------------------------TGACAGAAGAGAGTGAGCACA 	49
--------------------------------TGACAGAAGAGAGTGAGCAC 	2745
--------------------------------TGACAGAAGAGAGTGAGCA 	49
---------------------------------GACAGAAGAGAGTGAGCACA 	45
---------------------------------GACAGAAGAGAGTGAGCAC 	24
----------------------------------ACAGAAGAGAGTGAGCACA 	5
----------------------------------ACAGAAGAGAGTGAGCACAC 	1
-----------------------------------------------------------------------------------------------TGCTCACTCCTCTTTCTGTCACC 	2
------------------------------------------------------------------------------------------------GCTCACTCCTCTTTCTGTC 	2
------------------------------------------------------------------------------------------------GCTCACTCCTCTTTCTGTCACC 	18
------------------------------------------------------------------------------------------------GCTCACTCCTCTTTCTGTCA 	3
------------------------------------------------------------------------------------------------GCTCACTCCTCTTTCTGTCACCC 	5


Overlaps with: MNEST041907 MNEST048804
Overlaps with miRBase pre-miRNAs: osa-MIR156d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
22 Oryza sativa GSM520638-18676 TGACAGAAGAGAGTGAGCAC GCTCACTTCTCTCTCTGTCAGC up 0 2


Secondary structure

TTAGGAGGAAGAGAGGGGTGAGAGGTGAGGCTGACAGAAGAGAGTGAGCACACATGGTGACTTTCTTGCATGCTGAATGGACTCATGCTTGAAGCTATGTGTGCTCACTTCTCTCTCTGTCAGCCATTTGATCTCTCTTTCTCTCTTTCTCC
------------------------------CTGACAGAAGAGAGTGAGCAC 	14
-------------------------------TGACAGAAGAGAGTGAGCACA 	49
-------------------------------TGACAGAAGAGAGTGAGCAC 	2745
-------------------------------TGACAGAAGAGAGTGAGCA 	49
--------------------------------GACAGAAGAGAGTGAGCACA 	45
--------------------------------GACAGAAGAGAGTGAGCAC 	24
---------------------------------ACAGAAGAGAGTGAGCACA 	5
---------------------------------ACAGAAGAGAGTGAGCACAC 	1
-----------------------------------------------------------------------------TGGACTCATGCTTGAAGCT 	1
------------------------------------------------------------------------------------------------------GCTCACTTCTCTCTCTGTCAGC 	20



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
23 Oryza sativa GSM520638-18676 TGACAGAAGAGAGTGAGCAC GCTCACTCTCTATCTGTCAGC up 0 1


Secondary structure

TCAGTTAATTTGTCTTGAGAGGGGAAGAGATCTCTATGGGTTTTGGAGGTCTGACAGAAGAGAGTGAGCACACACGGTGCTTTCTTAGCATGCAAGAGCCATGCTGGGAGCTGTGCGTGCTCACTCTCTATCTGTCAGCCGTTCACCATGCCCAATATGATTAATCTCCTTCTCTCAGTTGACAGTA
-------------------------------------------------TCTGACAGAAGAGAGTGAGCAC 	1
--------------------------------------------------CTGACAGAAGAGAGTGAGCAC 	14
---------------------------------------------------TGACAGAAGAGAGTGAGCACA 	49
---------------------------------------------------TGACAGAAGAGAGTGAGCAC 	2745
---------------------------------------------------TGACAGAAGAGAGTGAGCA 	49
----------------------------------------------------GACAGAAGAGAGTGAGCACA 	45
----------------------------------------------------GACAGAAGAGAGTGAGCAC 	24
-----------------------------------------------------ACAGAAGAGAGTGAGCACA 	5
-----------------------------------------------------ACAGAAGAGAGTGAGCACAC 	1
----------------------------------------------------------------------------------------------------------------------GCTCACTCTCTATCTGTCAGC 	1


Overlaps with: MNEST049442
Overlaps with miRBase pre-miRNAs: osa-MIR156b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
24 Oryza sativa GSM520638-18676 TGACAGAAGAGAGTGAGCAC GCTCACTTCTCTCTCTGTCACC up 0 2


Secondary structure

TACTAGGAGGGTGACAGAAGAGAGTGAGCACACGTGGTTGTTTCCTTGCATAAATGATGCCTATGCTTGGAGCTACGCGTGCTCACTTCTCTCTCTGTCACCTCCACCCC
-----------TGACAGAAGAGAGTGAGCACA 	49
-----------TGACAGAAGAGAGTGAGCAC 	2745
-----------TGACAGAAGAGAGTGAGCA 	49
------------GACAGAAGAGAGTGAGCACA 	45
------------GACAGAAGAGAGTGAGCAC 	24
-------------ACAGAAGAGAGTGAGCACA 	5
-------------ACAGAAGAGAGTGAGCACAC 	1


Overlaps with: MNEST041904 MNEST048801 MNEST049326
Overlaps with miRBase pre-miRNAs: osa-MIR156a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
25 Oryza sativa GSM686040-31373 TGACAGAAGAGAGTGAGCAC GCTCACTTCTCTCTCTGTCAGC up 0 2


Secondary structure

CCGCGGCTGGCTGACAGAAGAGAGTGAGCACACAGCGGGCAGACTGCATCTGAATTACCTGTTGCGACGAAGAAGACGACGGACGCAGCTTGCCGTTGCGTGCTCACTTCTCTCTCTGTCAGCTCTCTCTC
--------GGCTGACAGAAGAGAGTGA 	1
---------GCTGACAGAAGAGAGTGAGCAC 	1
----------CTGACAGAAGAGAGTGAGCACA 	7
----------CTGACAGAAGAGAGTGAGCAC 	3432
----------CTGACAGAAGAGAGTGAGCA 	69
----------CTGACAGAAGAGAGTGAGC 	15
-----------TGACAGAAGAGAGTGAGCACAC 	1
-----------TGACAGAAGAGAGTGAGCACA 	2206
-----------TGACAGAAGAGAGTGAGCAC 	1361564
-----------TGACAGAAGAGAGTGAGCA 	6509
------------GACAGAAGAGAGTGAGCACA 	32
------------GACAGAAGAGAGTGAGCAC 	2193
-------------ACAGAAGAGAGTGAGCACAC 	2
-------------ACAGAAGAGAGTGAGCACA 	10
------------------------------------------------TCTGAATTACCTGTTGCGACGA 	1
---------------------------------------------------------------GCGACGAAGAAGACGACGGA 	1
----------------------------------------------------------------------------------------------------TGCTCACTTCTCTCTCTGTCAGC 	6
-----------------------------------------------------------------------------------------------------GCTCACTTCTCTCTCTGTCAGCT 	1
-----------------------------------------------------------------------------------------------------GCTCACTTCTCTCTCTGTCAGC 	192
-----------------------------------------------------------------------------------------------------GCTCACTTCTCTCTCTGTCAG 	2
-----------------------------------------------------------------------------------------------------GCTCACTTCTCTCTCTGTCA 	1
-----------------------------------------------------------------------------------------------------GCTCACTTCTCTCTCTGTC 	1
-------------------------------------------------------------------------------------------------------TCACTTCTCTCTCTGTCAGC 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
26 Oryza sativa GSM686040-31373 TGACAGAAGAGAGTGAGCAC GCTCGCTCCTCTTTCTGTCAGC up 1 2


Secondary structure

GCATATGAAAGGCGAGATTGTTGACAGAAGAGAGTGAGCACACGGCGCGGCGGCTAGCCATCGGCGGGATGCCTGCCCCCGCCGCGTGCTCGCTCCTCTTTCTGTCAGCATCTCTCATCACTCCCTC
------------CGAGATTGTTGACAGAAGAGAGT 	1
--------------AGATTGTTGACAGAAGAGAGTG 	2
---------------GATTGTTGACAGAAGAGAGTGAG 	1
----------------ATTGTTGACAGAAGAGAGTGAGC 	1
-----------------TTGTTGACAGAAGAGAGTGAG 	4
------------------TGTTGACAGAAGAGAGTGAGC 	16
------------------TGTTGACAGAAGAGAGTGAG 	2
------------------TGTTGACAGAAGAGAGTGA 	1
-------------------GTTGACAGAAGAGAGTGAGCAC 	1
-------------------GTTGACAGAAGAGAGTGAGC 	1
--------------------TTGACAGAAGAGAGTGAGCACA 	23
--------------------TTGACAGAAGAGAGTGAGCAC 	73169
--------------------TTGACAGAAGAGAGTGAGCA 	560
--------------------TTGACAGAAGAGAGTGAGC 	248
---------------------TGACAGAAGAGAGTGAGCACAC 	1
---------------------TGACAGAAGAGAGTGAGCACA 	2206
---------------------TGACAGAAGAGAGTGAGCAC 	1361564
---------------------TGACAGAAGAGAGTGAGCA 	6509
----------------------GACAGAAGAGAGTGAGCACA 	32
----------------------GACAGAAGAGAGTGAGCAC 	2193
-----------------------ACAGAAGAGAGTGAGCACAC 	2
-----------------------ACAGAAGAGAGTGAGCACA 	10
--------------------------------------------------------------------------------------TGCTCGCTCCTCTTTCTGTCAG 	3


Overlaps with: MNEST048813
Overlaps with miRBase pre-miRNAs: osa-MIR156j osa-MIR156h
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
27 Oryza sativa GSM686040-31373 TGACAGAAGAGAGTGAGCAC GCTCACTGCTCTTTCTGTCATC up 0 2


Secondary structure

GGGCGGGCCGGTGGCGCGAGGTGACAGAAGAGAGTGAGCACACGGCCGGGCGTGACGGCACCGGCGGGCGTGCCGTCGCGGCCGCGTGCTCACTGCTCTTTCTGTCATCCGGTGCCGGCCGTTTTCT
-------------------GGTGACAGAAGAGAGTGAGC 	1
--------------------GTGACAGAAGAGAGTGAGCAC 	13
---------------------TGACAGAAGAGAGTGAGCACAC 	1
---------------------TGACAGAAGAGAGTGAGCACA 	2206
---------------------TGACAGAAGAGAGTGAGCAC 	1361564
---------------------TGACAGAAGAGAGTGAGCA 	6509
----------------------GACAGAAGAGAGTGAGCACA 	32
----------------------GACAGAAGAGAGTGAGCAC 	2193
-----------------------ACAGAAGAGAGTGAGCACAC 	2
-----------------------ACAGAAGAGAGTGAGCACA 	10


Overlaps with: MNEST041908 MNEST048805
Overlaps with miRBase pre-miRNAs: osa-MIR156e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
28 Oryza sativa GSM686040-31373 TGACAGAAGAGAGTGAGCAC GCTCACTCCTCTTTCTGTCACC up 1 2


Secondary structure

AATTTCTAGCACGGAGAAGCTCTCATGAGATTGACAGAAGAGAGTGAGCACACGGCGTGATGGCCGGCATAAAATCTATCCCGTCCTCGCCGCGTGCTCACTCCTCTTTCTGTCACCCTCTTTCTCTCAGGGCTCAACTCCTATC
-----------------------------ATTGACAGAAGAGAGTGAGCAC 	91
-----------------------------ATTGACAGAAGAGAGTGAGCA 	3
-----------------------------ATTGACAGAAGAGAGTGAGC 	1
------------------------------TTGACAGAAGAGAGTGAGCACA 	23
------------------------------TTGACAGAAGAGAGTGAGCAC 	73169
------------------------------TTGACAGAAGAGAGTGAGCA 	560
------------------------------TTGACAGAAGAGAGTGAGC 	248
-------------------------------TGACAGAAGAGAGTGAGCACAC 	1
-------------------------------TGACAGAAGAGAGTGAGCACA 	2206
-------------------------------TGACAGAAGAGAGTGAGCAC 	1361564
-------------------------------TGACAGAAGAGAGTGAGCA 	6509
--------------------------------GACAGAAGAGAGTGAGCACA 	32
--------------------------------GACAGAAGAGAGTGAGCAC 	2193
---------------------------------ACAGAAGAGAGTGAGCACAC 	2
---------------------------------ACAGAAGAGAGTGAGCACA 	10
-----------------------------------------------------------------------------------------------GCTCACTCCTCTTTCTGTCACCC 	1


Overlaps with: MNEST041907 MNEST048804
Overlaps with miRBase pre-miRNAs: osa-MIR156d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
29 Oryza sativa GSM686040-31373 TGACAGAAGAGAGTGAGCAC GCTCACTGCTCTGTCTGTCATC up 0 2


Secondary structure

GCCGGTGCGGGCGCTGGGCGGTGACAGAAGAGAGTGAGCACACGGCCGGGCGGAACGGCACCGGCGGATGTGCCGTCGCGGCCGCGTGCTCACTGCTCTGTCTGTCATCCACTCCTCTCCCACCCCC
-----------------GCGGTGACAGAAGAGAGTGAGCAC 	1
------------------CGGTGACAGAAGAGAGTGAGCAC 	3
-------------------GGTGACAGAAGAGAGTGAGC 	1
--------------------GTGACAGAAGAGAGTGAGCAC 	13
---------------------TGACAGAAGAGAGTGAGCACAC 	1
---------------------TGACAGAAGAGAGTGAGCACA 	2206
---------------------TGACAGAAGAGAGTGAGCAC 	1361564
---------------------TGACAGAAGAGAGTGAGCA 	6509
----------------------GACAGAAGAGAGTGAGCACA 	32
----------------------GACAGAAGAGAGTGAGCAC 	2193
-----------------------ACAGAAGAGAGTGAGCACAC 	2
-----------------------ACAGAAGAGAGTGAGCACA 	10
--------------------------------------------------------------------------------------TGCTCACTGCTCTGTCTGTCATC 	2
---------------------------------------------------------------------------------------GCTCACTGCTCTGTCTGTCATC 	3


Overlaps with: MNEST041912 MNEST048809
Overlaps with miRBase pre-miRNAs: osa-MIR156i
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
30 Oryza sativa GSM686040-31373 TGACAGAAGAGAGTGAGCAC GCTCACTCTCTATCTGTCAGC up 0 1


Secondary structure

TCAGTTAATTTGTCTTGAGAGGGGAAGAGATCTCTATGGGTTTTGGAGGTCTGACAGAAGAGAGTGAGCACACACGGTGCTTTCTTAGCATGCAAGAGCCATGCTGGGAGCTGTGCGTGCTCACTCTCTATCTGTCAGCCGTTCACCATGCCCAATATGATTAATCTCCTTCTCTCAGTTGACAGTA
-------------------------------------------TGGAGGTCTGACAGAAGAGAG 	1
---------------------------------------------GAGGTCTGACAGAAGAGAGTG 	1
----------------------------------------------AGGTCTGACAGAAGAGAGTGA 	2
------------------------------------------------GTCTGACAGAAGAGAGTGAGCAC 	2
-------------------------------------------------TCTGACAGAAGAGAGTGAGCACAC 	1
-------------------------------------------------TCTGACAGAAGAGAGTGAGCACA 	2
-------------------------------------------------TCTGACAGAAGAGAGTGAGCAC 	512
-------------------------------------------------TCTGACAGAAGAGAGTGAGCA 	8
-------------------------------------------------TCTGACAGAAGAGAGTGAGC 	4
-------------------------------------------------TCTGACAGAAGAGAGTGAG 	1
--------------------------------------------------CTGACAGAAGAGAGTGAGCACA 	7
--------------------------------------------------CTGACAGAAGAGAGTGAGCAC 	3432
--------------------------------------------------CTGACAGAAGAGAGTGAGCA 	69
--------------------------------------------------CTGACAGAAGAGAGTGAGC 	15
---------------------------------------------------TGACAGAAGAGAGTGAGCACACAC 	1
---------------------------------------------------TGACAGAAGAGAGTGAGCACAC 	1
---------------------------------------------------TGACAGAAGAGAGTGAGCACA 	2206
---------------------------------------------------TGACAGAAGAGAGTGAGCAC 	1361564
---------------------------------------------------TGACAGAAGAGAGTGAGCA 	6509
----------------------------------------------------GACAGAAGAGAGTGAGCACA 	32
----------------------------------------------------GACAGAAGAGAGTGAGCAC 	2193
-----------------------------------------------------ACAGAAGAGAGTGAGCACAC 	2
-----------------------------------------------------ACAGAAGAGAGTGAGCACA 	10
----------------------------------------------------------------------------------------------------------------------GCTCACTCTCTATCTGTCAGC 	28


Overlaps with: MNEST049442
Overlaps with miRBase pre-miRNAs: osa-MIR156b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
31 Oryza sativa GSM686040-31373 TGACAGAAGAGAGTGAGCAC GCTCACTTCTCTCTCTGTCAGC up 0 2


Secondary structure

TTAGGAGGAAGAGAGGGGTGAGAGGTGAGGCTGACAGAAGAGAGTGAGCACACATGGTGACTTTCTTGCATGCTGAATGGACTCATGCTTGAAGCTATGTGTGCTCACTTCTCTCTCTGTCAGCCATTTGATCTCTCTTTCTCTCTTTCTCC
----------------------AGGTGAGGCTGACAGAAGA 	1
----------------------------GGCTGACAGAAGAGAGTGA 	1
-----------------------------GCTGACAGAAGAGAGTGAGCAC 	1
------------------------------CTGACAGAAGAGAGTGAGCACA 	7
------------------------------CTGACAGAAGAGAGTGAGCAC 	3432
------------------------------CTGACAGAAGAGAGTGAGCA 	69
------------------------------CTGACAGAAGAGAGTGAGC 	15
-------------------------------TGACAGAAGAGAGTGAGCACAC 	1
-------------------------------TGACAGAAGAGAGTGAGCACA 	2206
-------------------------------TGACAGAAGAGAGTGAGCAC 	1361564
-------------------------------TGACAGAAGAGAGTGAGCA 	6509
--------------------------------GACAGAAGAGAGTGAGCACA 	32
--------------------------------GACAGAAGAGAGTGAGCAC 	2193
---------------------------------ACAGAAGAGAGTGAGCACAC 	2
---------------------------------ACAGAAGAGAGTGAGCACA 	10
-----------------------------------------------------------------------------------------------------TGCTCACTTCTCTCTCTGTCAGC 	6
------------------------------------------------------------------------------------------------------GCTCACTTCTCTCTCTGTCAGC 	192
------------------------------------------------------------------------------------------------------GCTCACTTCTCTCTCTGTCAG 	2
------------------------------------------------------------------------------------------------------GCTCACTTCTCTCTCTGTCA 	1
------------------------------------------------------------------------------------------------------GCTCACTTCTCTCTCTGTC 	1
--------------------------------------------------------------------------------------------------------TCACTTCTCTCTCTGTCAGC 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
32 Oryza sativa GSM686040-31373 TGACAGAAGAGAGTGAGCAC GCTCACTTCTCTCTCTGTCACC up 0 2


Secondary structure

TACTAGGAGGGTGACAGAAGAGAGTGAGCACACGTGGTTGTTTCCTTGCATAAATGATGCCTATGCTTGGAGCTACGCGTGCTCACTTCTCTCTCTGTCACCTCCACCCC
---------GGTGACAGAAGAGAGTGAGC 	1
----------GTGACAGAAGAGAGTGAGCAC 	13
-----------TGACAGAAGAGAGTGAGCACAC 	1
-----------TGACAGAAGAGAGTGAGCACA 	2206
-----------TGACAGAAGAGAGTGAGCAC 	1361564
-----------TGACAGAAGAGAGTGAGCA 	6509
------------GACAGAAGAGAGTGAGCACA 	32
------------GACAGAAGAGAGTGAGCAC 	2193
-------------ACAGAAGAGAGTGAGCACAC 	2
-------------ACAGAAGAGAGTGAGCACA 	10
--------------------------------------------------------------------------------GCTCACTTCTCTCTCTGTCA 	1
--------------------------------------------------------------------------------GCTCACTTCTCTCTCTGTC 	1


Overlaps with: MNEST041904 MNEST048801 MNEST049326
Overlaps with miRBase pre-miRNAs: osa-MIR156a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
33 Oryza sativa GSM520640-18679 TGACAGAAGAGAGTGAGCAC GCTCACTTCTCTCTCTGTCAGC up 0 2


Secondary structure

CCGCGGCTGGCTGACAGAAGAGAGTGAGCACACAGCGGGCAGACTGCATCTGAATTACCTGTTGCGACGAAGAAGACGACGGACGCAGCTTGCCGTTGCGTGCTCACTTCTCTCTCTGTCAGCTCTCTCTC
-------TGGCTGACAGAAGAGAGTGAGCA 	1
----------CTGACAGAAGAGAGTGAGCAC 	17
-----------TGACAGAAGAGAGTGAGCACA 	18
-----------TGACAGAAGAGAGTGAGCAC 	1430
-----------TGACAGAAGAGAGTGAGCA 	25
------------GACAGAAGAGAGTGAGCACA 	20
------------GACAGAAGAGAGTGAGCAC 	10
-----------------------------------------------------------------------------------------------------GCTCACTTCTCTCTCTGTCAGC 	21



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
34 Oryza sativa GSM520640-18679 TTGACAGAAGAGAGTGAGCAC GCTCGCTCCTCTTTCTGTCAGCA up 1 2


Secondary structure

GTGCAGGTTTGTTGATCGATCTTGGGGCGGGGCGGGATCGAGCATATGAAAGGCGAGATTGTTGACAGAAGAGAGTGAGCACACGGCGCGGCGGCTAGCCATCGGCGGGATGCCTGCCCCCGCCGCGTGCTCGCTCCTCTTTCTGTCAGCATCTCTCATCACTCCCTCCCGCATCCCCCGCCCCGATCTCGCGTCGATCTCTCATCTCC
-------------------------------------------------------AGATTGTTGACAGAAGAGAGTG 	3
----------------------------------------------------------TTGTTGACAGAAGAGAGTGAG 	1
-----------------------------------------------------------TGTTGACAGAAGAGAGTGAGC 	2
-------------------------------------------------------------TTGACAGAAGAGAGTGAGCACA 	3
-------------------------------------------------------------TTGACAGAAGAGAGTGAGCA 	54
-------------------------------------------------------------TTGACAGAAGAGAGTGAGC 	43
-------------------------------------------------------------TTGACAGAAGAGAGTGAGCAC 	3214
--------------------------------------------------------------TGACAGAAGAGAGTGAGCACA 	18
--------------------------------------------------------------TGACAGAAGAGAGTGAGCAC 	1430
--------------------------------------------------------------TGACAGAAGAGAGTGAGCA 	25
---------------------------------------------------------------GACAGAAGAGAGTGAGCACA 	20
---------------------------------------------------------------GACAGAAGAGAGTGAGCAC 	10
---------------------------------------------------------------------AGAGAGTGAGCACACGGCG 	1
-------------------------------------------------------------------------------------------------------------------------------TGCTCGCTCCTCTTTCTGTCAG 	25
-------------------------------------------------------------------------------------------------------------------------------TGCTCGCTCCTCTTTCTGTCAGC 	8
--------------------------------------------------------------------------------------------------------------------------------GCTCGCTCCTCTTTCTGTCAGC 	14
--------------------------------------------------------------------------------------------------------------------------------GCTCGCTCCTCTTTCTGTCAGCA 	12
---------------------------------------------------------------------------------------------------------------------------------CTCGCTCCTCTTTCTGTCAGCA 	1
------------------------------------------------------------------------------------------------------------------------------------GCTCCTCTTTCTGTCAGCA 	1


Overlaps with: MNEST048813
Overlaps with miRBase pre-miRNAs: osa-MIR156j osa-MIR156h
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
35 Oryza sativa GSM520640-18679 TGACAGAAGAGAGTGAGCAC GCTCACTGCTCTTTCTGTCATC up 0 2


Secondary structure

GGGCGGGCCGGTGGCGCGAGGTGACAGAAGAGAGTGAGCACACGGCCGGGCGTGACGGCACCGGCGGGCGTGCCGTCGCGGCCGCGTGCTCACTGCTCTTTCTGTCATCCGGTGCCGGCCGTTTTCT
---------------------TGACAGAAGAGAGTGAGCACA 	18
---------------------TGACAGAAGAGAGTGAGCAC 	1430
---------------------TGACAGAAGAGAGTGAGCA 	25
----------------------GACAGAAGAGAGTGAGCACA 	20
----------------------GACAGAAGAGAGTGAGCAC 	10
--------------------------------------------------------------------------------------TGCTCACTGCTCTTTCTGTCATC 	1
---------------------------------------------------------------------------------------GCTCACTGCTCTTTCTGTCATC 	2


Overlaps with: MNEST041908 MNEST048805
Overlaps with miRBase pre-miRNAs: osa-MIR156e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
36 Oryza sativa GSM520640-18679 TGACAGAAGAGAGTGAGCAC GCTCACTGCTCTGTCTGTCATC up 0 2


Secondary structure

GCCGGTGCGGGCGCTGGGCGGTGACAGAAGAGAGTGAGCACACGGCCGGGCGGAACGGCACCGGCGGATGTGCCGTCGCGGCCGCGTGCTCACTGCTCTGTCTGTCATCCACTCCTCTCCCACCCCC
---------------------TGACAGAAGAGAGTGAGCACA 	18
---------------------TGACAGAAGAGAGTGAGCAC 	1430
---------------------TGACAGAAGAGAGTGAGCA 	25
----------------------GACAGAAGAGAGTGAGCACA 	20
----------------------GACAGAAGAGAGTGAGCAC 	10
--------------------------------------------------------------------------------------TGCTCACTGCTCTGTCTGTCATC 	1
---------------------------------------------------------------------------------------GCTCACTGCTCTGTCTGTCATC 	6


Overlaps with: MNEST041912 MNEST048809
Overlaps with miRBase pre-miRNAs: osa-MIR156i
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
37 Oryza sativa GSM520640-18679 TTGACAGAAGAGAGTGAGCAC GCTCACTCCTCTTTCTGTCACCC up 2 2


Secondary structure

AAATTTCTAGCACGGAGAAGCTCTCATGAGATTGACAGAAGAGAGTGAGCACACGGCGTGATGGCCGGCATAAAATCTATCCCGTCCTCGCCGCGTGCTCACTCCTCTTTCTGTCACCCTCTTTCTCTCAGGGCTCAACTCCTATCC
AAATTTCTAGCACGGAGAAGCTCT 	1
------------------------------ATTGACAGAAGAGAGTGAGCA 	1
------------------------------ATTGACAGAAGAGAGTGAGCAC 	7
-------------------------------TTGACAGAAGAGAGTGAGCACA 	3
-------------------------------TTGACAGAAGAGAGTGAGCA 	54
-------------------------------TTGACAGAAGAGAGTGAGC 	43
-------------------------------TTGACAGAAGAGAGTGAGCAC 	3214
--------------------------------TGACAGAAGAGAGTGAGCACA 	18
--------------------------------TGACAGAAGAGAGTGAGCAC 	1430
--------------------------------TGACAGAAGAGAGTGAGCA 	25
---------------------------------GACAGAAGAGAGTGAGCACA 	20
---------------------------------GACAGAAGAGAGTGAGCAC 	10
---------------------------------------AGAGAGTGAGCACACGGCG 	1
-----------------------------------------------------------------------------------------------TGCTCACTCCTCTTTCTGTCAC 	2
------------------------------------------------------------------------------------------------GCTCACTCCTCTTTCTGTCAC 	1
------------------------------------------------------------------------------------------------GCTCACTCCTCTTTCTGTCACC 	19
------------------------------------------------------------------------------------------------GCTCACTCCTCTTTCTGTCACCC 	7


Overlaps with: MNEST041907 MNEST048804
Overlaps with miRBase pre-miRNAs: osa-MIR156d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
38 Oryza sativa GSM520640-18679 TGACAGAAGAGAGTGAGCAC GCTCACTTCTCTCTCTGTCAGC up 0 2


Secondary structure

TTAGGAGGAAGAGAGGGGTGAGAGGTGAGGCTGACAGAAGAGAGTGAGCACACATGGTGACTTTCTTGCATGCTGAATGGACTCATGCTTGAAGCTATGTGTGCTCACTTCTCTCTCTGTCAGCCATTTGATCTCTCTTTCTCTCTTTCTCC
------------------------------CTGACAGAAGAGAGTGAGCAC 	17
-------------------------------TGACAGAAGAGAGTGAGCACA 	18
-------------------------------TGACAGAAGAGAGTGAGCAC 	1430
-------------------------------TGACAGAAGAGAGTGAGCA 	25
--------------------------------GACAGAAGAGAGTGAGCACA 	20
--------------------------------GACAGAAGAGAGTGAGCAC 	10
------------------------------------------------------------------------------------------------------GCTCACTTCTCTCTCTGTCAGC 	21



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
39 Oryza sativa GSM520640-18679 TGACAGAAGAGAGTGAGCAC GCTCACTCTCTATCTGTCAGC up 0 1


Secondary structure

TCAGTTAATTTGTCTTGAGAGGGGAAGAGATCTCTATGGGTTTTGGAGGTCTGACAGAAGAGAGTGAGCACACACGGTGCTTTCTTAGCATGCAAGAGCCATGCTGGGAGCTGTGCGTGCTCACTCTCTATCTGTCAGCCGTTCACCATGCCCAATATGATTAATCTCCTTCTCTCAGTTGACAGTA
--------------------------------------------------CTGACAGAAGAGAGTGAGCAC 	17
---------------------------------------------------TGACAGAAGAGAGTGAGCACA 	18
---------------------------------------------------TGACAGAAGAGAGTGAGCAC 	1430
---------------------------------------------------TGACAGAAGAGAGTGAGCA 	25
----------------------------------------------------GACAGAAGAGAGTGAGCACA 	20
----------------------------------------------------GACAGAAGAGAGTGAGCAC 	10
----------------------------------------------------------------------------------------------------------------------GCTCACTCTCTATCTGTCAGC 	2


Overlaps with: MNEST049442
Overlaps with miRBase pre-miRNAs: osa-MIR156b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
40 Oryza sativa GSM520640-18679 TGACAGAAGAGAGTGAGCAC GCTCACTTCTCTCTCTGTCACC up 0 2


Secondary structure

TACTAGGAGGGTGACAGAAGAGAGTGAGCACACGTGGTTGTTTCCTTGCATAAATGATGCCTATGCTTGGAGCTACGCGTGCTCACTTCTCTCTCTGTCACCTCCACCCC
-----------TGACAGAAGAGAGTGAGCACA 	18
-----------TGACAGAAGAGAGTGAGCAC 	1430
-----------TGACAGAAGAGAGTGAGCA 	25
------------GACAGAAGAGAGTGAGCACA 	20
------------GACAGAAGAGAGTGAGCAC 	10


Overlaps with: MNEST041904 MNEST048801 MNEST049326
Overlaps with miRBase pre-miRNAs: osa-MIR156a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
41 Oryza sativa GSM571077-22529 TGACAGAAGAGAGTGAGCAC GCTCACTTCTCTCTCTGTCAGC up 0 2


Secondary structure

CCGCGGCTGGCTGACAGAAGAGAGTGAGCACACAGCGGGCAGACTGCATCTGAATTACCTGTTGCGACGAAGAAGACGACGGACGCAGCTTGCCGTTGCGTGCTCACTTCTCTCTCTGTCAGCTCTCTCTC
---------GCTGACAGAAGAGAGTGAGCAC 	1
----------CTGACAGAAGAGAGTGAGCAC 	597
----------CTGACAGAAGAGAGTGAGCA 	6
----------CTGACAGAAGAGAGTGAGC 	4
----------CTGACAGAAGAGAGTGAGCACA 	2
-----------TGACAGAAGAGAGTGAGCACA 	354
-----------TGACAGAAGAGAGTGAGCAC 	161703
-----------TGACAGAAGAGAGTGAGCA 	545
------------GACAGAAGAGAGTGAGCACA 	73
------------GACAGAAGAGAGTGAGCAC 	5830
-------------ACAGAAGAGAGTGAGCACA 	21
-------------ACAGAAGAGAGTGAGCACAC 	2
----------------GAAGAGAGTGAGCACACAGCGGGC 	1
--------------------AGAGTGAGCACACAGCGGGCAG 	1
-------------------------------ACAGCGGGCAGACTGCATCTGA 	1
-----------------------------------------------------------------------------------------------------GCTCACTTCTCTCTCTGTCAGC 	11
-----------------------------------------------------------------------------------------------------GCTCACTTCTCTCTCTGTCAGCT 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
42 Oryza sativa GSM571077-22529 TGACAGAAGAGAGTGAGCAC GCTCGCTCCTCTTTCTGTCAGC up 1 2


Secondary structure

GCATATGAAAGGCGAGATTGTTGACAGAAGAGAGTGAGCACACGGCGCGGCGGCTAGCCATCGGCGGGATGCCTGCCCCCGCCGCGTGCTCGCTCCTCTTTCTGTCAGCATCTCTCATCACTCCCTC
--------------AGATTGTTGACAGAAGAGAGTG 	1
-----------------TTGTTGACAGAAGAGAGTGAG 	2
------------------TGTTGACAGAAGAGAGTGAGC 	7
------------------TGTTGACAGAAGAGAGTGAGCAC 	2
------------------TGTTGACAGAAGAGAGTGA 	1
-------------------GTTGACAGAAGAGAGTGAGC 	1
--------------------TTGACAGAAGAGAGTGAGCACA 	26
--------------------TTGACAGAAGAGAGTGAGCAC 	75782
--------------------TTGACAGAAGAGAGTGAGCA 	372
--------------------TTGACAGAAGAGAGTGAGC 	118
---------------------TGACAGAAGAGAGTGAGCACA 	354
---------------------TGACAGAAGAGAGTGAGCAC 	161703
---------------------TGACAGAAGAGAGTGAGCA 	545
---------------------TGACAGAAGAGAGTGAGCACACG 	1
----------------------GACAGAAGAGAGTGAGCACA 	73
----------------------GACAGAAGAGAGTGAGCAC 	5830
-----------------------ACAGAAGAGAGTGAGCACA 	21
-----------------------ACAGAAGAGAGTGAGCACAC 	2
--------------------------------------------------------------------------------------TGCTCGCTCCTCTTTCTGTCAG 	7
---------------------------------------------------------------------------------------GCTCGCTCCTCTTTCTGTCAGC 	8
---------------------------------------------------------------------------------------GCTCGCTCCTCTTTCTGTCAGCA 	3
---------------------------------------------------------------------------------------GCTCGCTCCTCTTTCTGTCAG 	2


Overlaps with: MNEST048813
Overlaps with miRBase pre-miRNAs: osa-MIR156j osa-MIR156h
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
43 Oryza sativa GSM571077-22529 TGACAGAAGAGAGTGAGCAC GCTCACTGCTCTTTCTGTCATC up 0 2


Secondary structure

GGGCGGGCCGGTGGCGCGAGGTGACAGAAGAGAGTGAGCACACGGCCGGGCGTGACGGCACCGGCGGGCGTGCCGTCGCGGCCGCGTGCTCACTGCTCTTTCTGTCATCCGGTGCCGGCCGTTTTCT
--------------------GTGACAGAAGAGAGTGAGCAC 	33
---------------------TGACAGAAGAGAGTGAGCACA 	354
---------------------TGACAGAAGAGAGTGAGCAC 	161703
---------------------TGACAGAAGAGAGTGAGCA 	545
---------------------TGACAGAAGAGAGTGAGCACACG 	1
----------------------GACAGAAGAGAGTGAGCACA 	73
----------------------GACAGAAGAGAGTGAGCAC 	5830
-----------------------ACAGAAGAGAGTGAGCACA 	21
-----------------------ACAGAAGAGAGTGAGCACAC 	2
---------------------------------------------------------------------------------------GCTCACTGCTCTTTCTGTCA 	1


Overlaps with: MNEST041908 MNEST048805
Overlaps with miRBase pre-miRNAs: osa-MIR156e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
44 Oryza sativa GSM571077-22529 TGACAGAAGAGAGTGAGCAC GCTCACTCCTCTTTCTGTCACC up 1 2


Secondary structure

AATTTCTAGCACGGAGAAGCTCTCATGAGATTGACAGAAGAGAGTGAGCACACGGCGTGATGGCCGGCATAAAATCTATCCCGTCCTCGCCGCGTGCTCACTCCTCTTTCTGTCACCCTCTTTCTCTCAGGGCTCAACTCCTATC
-----------------------------ATTGACAGAAGAGAGTGAGCAC 	100
-----------------------------ATTGACAGAAGAGAGTGAGCA 	1
------------------------------TTGACAGAAGAGAGTGAGCACA 	26
------------------------------TTGACAGAAGAGAGTGAGCAC 	75782
------------------------------TTGACAGAAGAGAGTGAGCA 	372
------------------------------TTGACAGAAGAGAGTGAGC 	118
-------------------------------TGACAGAAGAGAGTGAGCACA 	354
-------------------------------TGACAGAAGAGAGTGAGCAC 	161703
-------------------------------TGACAGAAGAGAGTGAGCA 	545
-------------------------------TGACAGAAGAGAGTGAGCACACG 	1
--------------------------------GACAGAAGAGAGTGAGCACA 	73
--------------------------------GACAGAAGAGAGTGAGCAC 	5830
---------------------------------ACAGAAGAGAGTGAGCACA 	21
---------------------------------ACAGAAGAGAGTGAGCACAC 	2
----------------------------------------------------------------------------------------------TGCTCACTCCTCTTTCTGTCACC 	1
-----------------------------------------------------------------------------------------------GCTCACTCCTCTTTCTGTCACC 	23
-----------------------------------------------------------------------------------------------GCTCACTCCTCTTTCTGTCACCC 	2
-----------------------------------------------------------------------------------------------GCTCACTCCTCTTTCTGTCAC 	2
-------------------------------------------------------------------------------------------------TCACTCCTCTTTCTGTCACCC 	1


Overlaps with: MNEST041907 MNEST048804
Overlaps with miRBase pre-miRNAs: osa-MIR156d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
45 Oryza sativa GSM571077-22529 TGACAGAAGAGAGTGAGCAC GCTCACTGCTCTGTCTGTCATC up 0 2


Secondary structure

GCCGGTGCGGGCGCTGGGCGGTGACAGAAGAGAGTGAGCACACGGCCGGGCGGAACGGCACCGGCGGATGTGCCGTCGCGGCCGCGTGCTCACTGCTCTGTCTGTCATCCACTCCTCTCCCACCCCC
------------------CGGTGACAGAAGAGAGTGAGCAC 	1
--------------------GTGACAGAAGAGAGTGAGCAC 	33
---------------------TGACAGAAGAGAGTGAGCACA 	354
---------------------TGACAGAAGAGAGTGAGCAC 	161703
---------------------TGACAGAAGAGAGTGAGCA 	545
---------------------TGACAGAAGAGAGTGAGCACACG 	1
----------------------GACAGAAGAGAGTGAGCACA 	73
----------------------GACAGAAGAGAGTGAGCAC 	5830
-----------------------ACAGAAGAGAGTGAGCACA 	21
-----------------------ACAGAAGAGAGTGAGCACAC 	2
---------------------------------------------------------------------------------------GCTCACTGCTCTGTCTGTCATC 	9
-----------------------------------------------------------------------------------------TCACTGCTCTGTCTGTCATC 	2


Overlaps with: MNEST041912 MNEST048809
Overlaps with miRBase pre-miRNAs: osa-MIR156i
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
46 Oryza sativa GSM571077-22529 TGACAGAAGAGAGTGAGCAC GCTCACTCTCTATCTGTCAGC up 0 1


Secondary structure

TCAGTTAATTTGTCTTGAGAGGGGAAGAGATCTCTATGGGTTTTGGAGGTCTGACAGAAGAGAGTGAGCACACACGGTGCTTTCTTAGCATGCAAGAGCCATGCTGGGAGCTGTGCGTGCTCACTCTCTATCTGTCAGCCGTTCACCATGCCCAATATGATTAATCTCCTTCTCTCAGTTGACAGTA
----------------------------------------------AGGTCTGACAGAAGAGAGTGA 	1
-------------------------------------------------TCTGACAGAAGAGAGTGAGCAC 	23
--------------------------------------------------CTGACAGAAGAGAGTGAGCAC 	597
--------------------------------------------------CTGACAGAAGAGAGTGAGCA 	6
--------------------------------------------------CTGACAGAAGAGAGTGAGC 	4
--------------------------------------------------CTGACAGAAGAGAGTGAGCACA 	2
---------------------------------------------------TGACAGAAGAGAGTGAGCACA 	354
---------------------------------------------------TGACAGAAGAGAGTGAGCAC 	161703
---------------------------------------------------TGACAGAAGAGAGTGAGCA 	545
----------------------------------------------------GACAGAAGAGAGTGAGCACA 	73
----------------------------------------------------GACAGAAGAGAGTGAGCAC 	5830
-----------------------------------------------------ACAGAAGAGAGTGAGCACA 	21
-----------------------------------------------------ACAGAAGAGAGTGAGCACAC 	2
----------------------------------------------------------------------------------------------------------------------GCTCACTCTCTATCTGTCAGC 	17
----------------------------------------------------------------------------------------------------------------------GCTCACTCTCTATCTGTCAGCC 	2
-----------------------------------------------------------------------------------------------------------------------CTCACTCTCTATCTGTCAGC 	1


Overlaps with: MNEST049442
Overlaps with miRBase pre-miRNAs: osa-MIR156b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
47 Oryza sativa GSM571077-22529 TGACAGAAGAGAGTGAGCAC GCTCACTTCTCTCTCTGTCAGC up 0 2


Secondary structure

TTAGGAGGAAGAGAGGGGTGAGAGGTGAGGCTGACAGAAGAGAGTGAGCACACATGGTGACTTTCTTGCATGCTGAATGGACTCATGCTTGAAGCTATGTGTGCTCACTTCTCTCTCTGTCAGCCATTTGATCTCTCTTTCTCTCTTTCTCC
-----------------------------GCTGACAGAAGAGAGTGAGCAC 	1
------------------------------CTGACAGAAGAGAGTGAGCAC 	597
------------------------------CTGACAGAAGAGAGTGAGCA 	6
------------------------------CTGACAGAAGAGAGTGAGC 	4
------------------------------CTGACAGAAGAGAGTGAGCACA 	2
-------------------------------TGACAGAAGAGAGTGAGCACA 	354
-------------------------------TGACAGAAGAGAGTGAGCAC 	161703
-------------------------------TGACAGAAGAGAGTGAGCA 	545
--------------------------------GACAGAAGAGAGTGAGCACA 	73
--------------------------------GACAGAAGAGAGTGAGCAC 	5830
---------------------------------ACAGAAGAGAGTGAGCACA 	21
---------------------------------ACAGAAGAGAGTGAGCACAC 	2
------------------------------------------------------------------------------------------------------GCTCACTTCTCTCTCTGTCAGC 	11



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
48 Oryza sativa GSM571077-22529 TGACAGAAGAGAGTGAGCAC GCTCACTTCTCTCTCTGTCACC up 0 2


Secondary structure

TACTAGGAGGGTGACAGAAGAGAGTGAGCACACGTGGTTGTTTCCTTGCATAAATGATGCCTATGCTTGGAGCTACGCGTGCTCACTTCTCTCTCTGTCACCTCCACCCC
----------GTGACAGAAGAGAGTGAGCAC 	33
-----------TGACAGAAGAGAGTGAGCACA 	354
-----------TGACAGAAGAGAGTGAGCAC 	161703
-----------TGACAGAAGAGAGTGAGCA 	545
-----------TGACAGAAGAGAGTGAGCACACG 	1
------------GACAGAAGAGAGTGAGCACA 	73
------------GACAGAAGAGAGTGAGCAC 	5830
-------------ACAGAAGAGAGTGAGCACA 	21
-------------ACAGAAGAGAGTGAGCACAC 	2


Overlaps with: MNEST041904 MNEST048801 MNEST049326
Overlaps with miRBase pre-miRNAs: osa-MIR156a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
49 Oryza sativa GSM686039-31370 TGACAGAAGAGAGTGAGCAC GCTCACTTCTCTCTCTGTCAGC up 0 2


Secondary structure

CCGCGGCTGGCTGACAGAAGAGAGTGAGCACACAGCGGGCAGACTGCATCTGAATTACCTGTTGCGACGAAGAAGACGACGGACGCAGCTTGCCGTTGCGTGCTCACTTCTCTCTCTGTCAGCTCTCTCTC
-------TGGCTGACAGAAGAGAGTGAGCAC 	1
---------GCTGACAGAAGAGAGTGAGCAC 	3
---------GCTGACAGAAGAGAGTGAGCA 	1
---------GCTGACAGAAGAGAGTGAGC 	1
----------CTGACAGAAGAGAGTGAGCACACA 	1
----------CTGACAGAAGAGAGTGAGCACA 	4
----------CTGACAGAAGAGAGTGAGCAC 	3797
----------CTGACAGAAGAGAGTGAGCA 	95
----------CTGACAGAAGAGAGTGAGC 	18
-----------TGACAGAAGAGAGTGAGCACA 	2113
-----------TGACAGAAGAGAGTGAGCAC 	1542111
-----------TGACAGAAGAGAGTGAGCA 	7594
------------GACAGAAGAGAGTGAGCACA 	53
------------GACAGAAGAGAGTGAGCAC 	2325
-------------ACAGAAGAGAGTGAGCACA 	15
--------------------------AGCACACAGCGGGCAGACTGCATC 	1
----------------------------------------------------------------------------------------------------TGCTCACTTCTCTCTCTGTCAGC 	5
----------------------------------------------------------------------------------------------------TGCTCACTTCTCTCTCTGTCAG 	1
-----------------------------------------------------------------------------------------------------GCTCACTTCTCTCTCTGTCAGC 	213
-----------------------------------------------------------------------------------------------------GCTCACTTCTCTCTCTGTCAG 	5
-----------------------------------------------------------------------------------------------------GCTCACTTCTCTCTCTGTCA 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
50 Oryza sativa GSM686039-31370 TGACAGAAGAGAGTGAGCAC GCTCGCTCCTCTTTCTGTCAGC up 1 2


Secondary structure

GCATATGAAAGGCGAGATTGTTGACAGAAGAGAGTGAGCACACGGCGCGGCGGCTAGCCATCGGCGGGATGCCTGCCCCCGCCGCGTGCTCGCTCCTCTTTCTGTCAGCATCTCTCATCACTCCCTC
-----------------TTGTTGACAGAAGAGAGTGAG 	2
------------------TGTTGACAGAAGAGAGTGAGC 	16
------------------TGTTGACAGAAGAGAGTGAG 	1
-------------------GTTGACAGAAGAGAGTGAGC 	1
--------------------TTGACAGAAGAGAGTGAGCACA 	24
--------------------TTGACAGAAGAGAGTGAGCAC 	62502
--------------------TTGACAGAAGAGAGTGAGCA 	461
--------------------TTGACAGAAGAGAGTGAGC 	205
---------------------TGACAGAAGAGAGTGAGCACA 	2113
---------------------TGACAGAAGAGAGTGAGCAC 	1542111
---------------------TGACAGAAGAGAGTGAGCA 	7594
----------------------GACAGAAGAGAGTGAGCACA 	53
----------------------GACAGAAGAGAGTGAGCAC 	2325
-----------------------ACAGAAGAGAGTGAGCACA 	15
--------------------------------------------------------------------------------------TGCTCGCTCCTCTTTCTGTCAG 	5
---------------------------------------------------------------------------------------GCTCGCTCCTCTTTCTGTCAGC 	1


Overlaps with: MNEST048813
Overlaps with miRBase pre-miRNAs: osa-MIR156j osa-MIR156h
HuntMi prediction: true miRNA