miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGACAGAAGAGAGTGAGCAC

selected species: Vitis vinifera



12 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Vitis vinifera GSM458927 TGACAGAAGAGAGTGAGCAC GCTCACCTCTCTTTCTGTCAGC up 0 2


Secondary structure

GAGAGAGAGACTGACAGAAGAGAGTGAGCACATGCAGGCAATTTGTATAAGGGTATACCTATGCCGGTGCGTGCTCACCTCTCTTTCTGTCAGCTTCAGGTG
--------GACTGACAGAAGAGAGTGAGCAC 	12
--------GACTGACAGAAGAGAGTGAGCA 	1
---------ACTGACAGAAGAGAGTGAGC 	1
----------CTGACAGAAGAGAGTGAGCAC 	20
----------CTGACAGAAGAGAGTGAGCA 	1
-----------TGACAGAAGAGAGTGAGCACA 	1
-----------TGACAGAAGAGAGTGAGCAC 	118



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Vitis vinifera GSM458927 TGACAGAAGAGAGTGAGCAC GCTCACTCTCTATCTGTCATC up 0 1


Secondary structure

TAAGGAATAGGTGACAGAAGAGAGTGAGCACACATGGTCTGTTCTTGCATGGGTCCATGCTTGAAGCTCTGCGTGCTCACTCTCTATCTGTCATCTGTCCTCT
-----------TGACAGAAGAGAGTGAGCACA 	1
-----------TGACAGAAGAGAGTGAGCAC 	118



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Vitis vinifera GSM458927 TGACAGAAGAGAGTGAGCAC GCTCATTTCTCTTTCTGTCAGC up 1 2


Secondary structure

ACATTGAAAACTGACAGAAGAGAGTGAGCACACAGAGGCAATTGTATAAGTTTATGCTTTTGCTTTTGCGTGCTCATTTCTCTTTCTGTCAGCTTCCAGTG
---------ACTGACAGAAGAGAGTGAGC 	1
----------CTGACAGAAGAGAGTGAGCAC 	20
----------CTGACAGAAGAGAGTGAGCA 	1
-----------TGACAGAAGAGAGTGAGCACA 	1
-----------TGACAGAAGAGAGTGAGCAC 	118
---------------------GAGTGAGCACACAGAGGCA 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Vitis vinifera GSM458930-2718 TGACAGAAGAGAGTGAGCAC GCTCACCTCTCTTTCTGTCAGC up 0 2


Secondary structure

GAGAGAGAGACTGACAGAAGAGAGTGAGCACATGCAGGCAATTTGTATAAGGGTATACCTATGCCGGTGCGTGCTCACCTCTCTTTCTGTCAGCTTCAGGTG
--------GACTGACAGAAGAGAGTGAGCAC 	9
---------ACTGACAGAAGAGAGTGAGCAC 	2
----------CTGACAGAAGAGAGTGAGCAC 	66
----------CTGACAGAAGAGAGTGAGCA 	1
----------CTGACAGAAGAGAGTGAGC 	1
-----------TGACAGAAGAGAGTGAGCACAT 	1
-----------TGACAGAAGAGAGTGAGCACA 	22
-----------TGACAGAAGAGAGTGAGCAC 	269
-----------TGACAGAAGAGAGTGAGCA 	2
------------GACAGAAGAGAGTGAGCAC 	1
-------------ACAGAAGAGAGTGAGCACAT 	1
-----------------------------------------------------------------------TGCTCACCTCTCTTTCTGTCAGC 	1
-----------------------------------------------------------------------TGCTCACCTCTCTTTCTGTCAG 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Vitis vinifera GSM458930-2718 TGACAGAAGAGAGTGAGCAC GCTCATTTCTCTTTCTGTCAGC up 1 2


Secondary structure

ACATTGAAAACTGACAGAAGAGAGTGAGCACACAGAGGCAATTGTATAAGTTTATGCTTTTGCTTTTGCGTGCTCATTTCTCTTTCTGTCAGCTTCCAGTG
---------ACTGACAGAAGAGAGTGAGCAC 	2
----------CTGACAGAAGAGAGTGAGCAC 	66
----------CTGACAGAAGAGAGTGAGCA 	1
----------CTGACAGAAGAGAGTGAGC 	1
-----------TGACAGAAGAGAGTGAGCACA 	22
-----------TGACAGAAGAGAGTGAGCAC 	269
-----------TGACAGAAGAGAGTGAGCA 	2
------------GACAGAAGAGAGTGAGCAC 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Vitis vinifera GSM458930-2718 TGACAGAAGAGAGTGAGCAC GCTCACTCTCTATCTGTCATC up 0 1


Secondary structure

TAAGGAATAGGTGACAGAAGAGAGTGAGCACACATGGTCTGTTCTTGCATGGGTCCATGCTTGAAGCTCTGCGTGCTCACTCTCTATCTGTCATCTGTCCTCT
-----------TGACAGAAGAGAGTGAGCACA 	22
-----------TGACAGAAGAGAGTGAGCAC 	269
-----------TGACAGAAGAGAGTGAGCA 	2
------------GACAGAAGAGAGTGAGCAC 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Vitis vinifera GSM458929-2717 TGACAGAAGAGAGTGAGCAC GCTCACCTCTCTTTCTGTCAGC up 0 2


Secondary structure

GAGAGAGAGACTGACAGAAGAGAGTGAGCACATGCAGGCAATTTGTATAAGGGTATACCTATGCCGGTGCGTGCTCACCTCTCTTTCTGTCAGCTTCAGGTG
--------GACTGACAGAAGAGAGTGAGCAC 	9
----------CTGACAGAAGAGAGTGAGCAC 	56
----------CTGACAGAAGAGAGTGAGCA 	2
-----------TGACAGAAGAGAGTGAGCACA 	19
-----------TGACAGAAGAGAGTGAGCAC 	2084
-----------TGACAGAAGAGAGTGAGCA 	38
------------GACAGAAGAGAGTGAGCAC 	10
-----------------------------------------------------------------------TGCTCACCTCTCTTTCTGTCAGC 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Vitis vinifera GSM458929-2717 TGACAGAAGAGAGTGAGCAC GCTCATTTCTCTTTCTGTCAGC up 1 2


Secondary structure

ACATTGAAAACTGACAGAAGAGAGTGAGCACACAGAGGCAATTGTATAAGTTTATGCTTTTGCTTTTGCGTGCTCATTTCTCTTTCTGTCAGCTTCCAGTG
----------CTGACAGAAGAGAGTGAGCAC 	56
----------CTGACAGAAGAGAGTGAGCA 	2
-----------TGACAGAAGAGAGTGAGCACA 	19
-----------TGACAGAAGAGAGTGAGCAC 	2084
-----------TGACAGAAGAGAGTGAGCA 	38
------------GACAGAAGAGAGTGAGCAC 	10
---------------------------------------------------------------------GTGCTCATTTCTCTTTCTGTCA 	1
-----------------------------------------------------------------------GCTCATTTCTCTTTCTGTCAGC 	2



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Vitis vinifera GSM458929-2717 TGACAGAAGAGAGTGAGCAC GCTCACTCTCTATCTGTCATC up 0 1


Secondary structure

TAAGGAATAGGTGACAGAAGAGAGTGAGCACACATGGTCTGTTCTTGCATGGGTCCATGCTTGAAGCTCTGCGTGCTCACTCTCTATCTGTCATCTGTCCTCT
-----------TGACAGAAGAGAGTGAGCACA 	19
-----------TGACAGAAGAGAGTGAGCAC 	2084
-----------TGACAGAAGAGAGTGAGCA 	38
------------GACAGAAGAGAGTGAGCAC 	10



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Vitis vinifera GSM458928-2716 TGACAGAAGAGAGTGAGCAC GCTCACCTCTCTTTCTGTCAGC up 0 2


Secondary structure

GAGAGAGAGACTGACAGAAGAGAGTGAGCACATGCAGGCAATTTGTATAAGGGTATACCTATGCCGGTGCGTGCTCACCTCTCTTTCTGTCAGCTTCAGGTG
--------GACTGACAGAAGAGAGTGAGCACA 	1
--------GACTGACAGAAGAGAGTGAGCAC 	13
--------GACTGACAGAAGAGAGTGAGCA 	3
---------ACTGACAGAAGAGAGTGAGCAC 	3
---------ACTGACAGAAGAGAGTGAGC 	2
----------CTGACAGAAGAGAGTGAGCAC 	69
----------CTGACAGAAGAGAGTGAGCA 	2
-----------TGACAGAAGAGAGTGAGCACAT 	1
-----------TGACAGAAGAGAGTGAGCACA 	46
-----------TGACAGAAGAGAGTGAGCAC 	246
-----------TGACAGAAGAGAGTGAGCA 	3
------------GACAGAAGAGAGTGAGCACA 	2
------------GACAGAAGAGAGTGAGCAC 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Vitis vinifera GSM458928-2716 TGACAGAAGAGAGTGAGCAC GCTCATTTCTCTTTCTGTCAGC up 1 2


Secondary structure

ACATTGAAAACTGACAGAAGAGAGTGAGCACACAGAGGCAATTGTATAAGTTTATGCTTTTGCTTTTGCGTGCTCATTTCTCTTTCTGTCAGCTTCCAGTG
---------ACTGACAGAAGAGAGTGAGCAC 	3
---------ACTGACAGAAGAGAGTGAGC 	2
----------CTGACAGAAGAGAGTGAGCAC 	69
----------CTGACAGAAGAGAGTGAGCA 	2
-----------TGACAGAAGAGAGTGAGCACA 	46
-----------TGACAGAAGAGAGTGAGCAC 	246
-----------TGACAGAAGAGAGTGAGCA 	3
------------GACAGAAGAGAGTGAGCACA 	2
------------GACAGAAGAGAGTGAGCAC 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Vitis vinifera GSM458928-2716 TGACAGAAGAGAGTGAGCAC GCTCACTCTCTATCTGTCATC up 0 1


Secondary structure

TAAGGAATAGGTGACAGAAGAGAGTGAGCACACATGGTCTGTTCTTGCATGGGTCCATGCTTGAAGCTCTGCGTGCTCACTCTCTATCTGTCATCTGTCCTCT
-----------TGACAGAAGAGAGTGAGCACA 	46
-----------TGACAGAAGAGAGTGAGCAC 	246
-----------TGACAGAAGAGAGTGAGCA 	3
------------GACAGAAGAGAGTGAGCACA 	2
------------GACAGAAGAGAGTGAGCAC 	1



HuntMi prediction: true miRNA