miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TGACAGAAGAGAGTGAGCACA

selected species: Glycine max



9 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Glycine max GSM852280 TGACAGAAGAGAGTGAGCACA TGCTCACTACTCTTTCTGTCGGT up 0 2


Secondary structure

TCCTTCTATTTGGACAGAAATTGACAGAAGAGAGTGAGCACAAAGAGGCACTTGATATAAATCTATATCACTGCTTTTGTGTGCTCACTACTCTTTCTGTCGGTTTTCATGTACCAGAAAAT
--------------------TTGACAGAAGAGAGTGAGCACAAA 	3
--------------------TTGACAGAAGAGAGTGAGCAC 	2
---------------------TGACAGAAGAGAGTGAGCACA 	8
---------------------TGACAGAAGAGAGTGAGCA 	3
----------------------GACAGAAGAGAGTGAGCAC 	1
----------------------GACAGAAGAGAGTGAGCAC 	1


Overlaps with miRBase pre-miRNAs: gma-MIR156o
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Glycine max GSM852280 TGACAGAAGAGAGTGAGCACA TGCTTACTCTCTATCTGTCACC up 1 1


Secondary structure

GGTAAGGGAGGTGACAGAAGAGAGTGAGCACACATAGTACTTTCTTGAATGATATAAGGTTTCATGCTTGAAGTTATGCGTGCTTACTCTCTATCTGTCACCCATCACCA
GGTAAGGGAGGTGACAGAAGAGAG 	3
----------GTGACAGAAGAGAGTGAGCAC 	1
-----------TGACAGAAGAGAGTGAGCACA 	8
-----------TGACAGAAGAGAGTGAGCA 	3
-----------TGACAGAAGAGAGTGAGCACACAT 	2
------------GACAGAAGAGAGTGAGCAC 	1
------------GACAGAAGAGAGTGAGCAC 	1


Overlaps with miRBase pre-miRNAs: gma-MIR156y
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Glycine max GSM852280 TGACAGAAGAGAGTGAGCACA TGCTCACTTCTCTATCTGTCAGC up 1 2


Secondary structure

TCACACCAGATTGAGAGAGGCTGACAGAAGAGAGTGAGCACATGCTAGTGGTATTTGTATGAGGGCATACAATTGCGGGTGCGTGCTCACTTCTCTATCTGTCAGCTTCCCATTCTTTTTTACT
---------------------TGACAGAAGAGAGTGAGCACA 	8
---------------------TGACAGAAGAGAGTGAGCA 	3
----------------------GACAGAAGAGAGTGAGCAC 	1
----------------------GACAGAAGAGAGTGAGCAC 	1
------------------------------------------------------------------------------------GCTCACTTCTCTATCTGTCAGC 	6

Overlaps with: MNEST046675
Overlaps with miRBase pre-miRNAs: gma-MIR156a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Glycine max GSM852280 TGACAGAAGAGAGTGAGCACA TGCTCACTCTCTATCTGTCACC up 0 1


Secondary structure

GGTAAGGGAGGTGACAGAAGAGAGTGAGCACACATAATACTTTCTTGTAAGATAAAGATTCATGCTTGAAGTTATGTGTGCTCACTCTCTATCTGTCACCCCACCACC
GGTAAGGGAGGTGACAGAAGAGAG 	3
----------GTGACAGAAGAGAGTGAGCAC 	1
-----------TGACAGAAGAGAGTGAGCACA 	8
-----------TGACAGAAGAGAGTGAGCA 	3
-----------TGACAGAAGAGAGTGAGCACACAT 	2
------------GACAGAAGAGAGTGAGCAC 	1
------------GACAGAAGAGAGTGAGCAC 	1
--------------CAGAAGAGAGTGAGCACACATAAT 	2
---------------------------------------------------------------------------GTGTGCTCACTCTCTATCTGTCAC 	1
-----------------------------------------------------------------------------GTGCTCACTCTCTATCTGTCA 	3
-------------------------------------------------------------------------------GCTCACTCTCTATCTGTCACCCCA 	4


Overlaps with miRBase pre-miRNAs: gma-MIR156v
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Glycine max GSM852280 TGACAGAAGAGAGTGAGCACA TGCTCACTTCTCTTTCTGTCAAC up 1 2


Secondary structure

AACTTAGAAATTGACAGAAGAGAGTGAGCACACAGAAGCACTTGGTATAGTTATATACTGTTGCTTTTGCGTGCTCACTTCTCTTTCTGTCAACTTCCAGTG
----------TTGACAGAAGAGAGTGAGCAC 	2
-----------TGACAGAAGAGAGTGAGCACA 	8
-----------TGACAGAAGAGAGTGAGCA 	3
------------GACAGAAGAGAGTGAGCAC 	1
------------GACAGAAGAGAGTGAGCAC 	1


Overlaps with miRBase pre-miRNAs: gma-MIR156h
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Glycine max GSM852280 TGACAGAAGAGAGTGAGCACA TGCTCATTCTCTATCTGTCACC up 1 1


Secondary structure

GGTAAGAGAGGTGACAGAAGAGAGTGAGCACACATGGTATTTTCTTGGATGATATAAGATTTCATGCTTGAAACTATGCGTGCTCATTCTCTATCTGTCACCCATCATCA
----------GTGACAGAAGAGAGTGAGCAC 	1
-----------TGACAGAAGAGAGTGAGCACA 	8
-----------TGACAGAAGAGAGTGAGCA 	3
-----------TGACAGAAGAGAGTGAGCACACAT 	2
------------GACAGAAGAGAGTGAGCAC 	1
------------GACAGAAGAGAGTGAGCAC 	1
--------------CAGAAGAGAGTGAGCACACATGGT 	1
------------------------------------------------------------------------ACTATGCGTGCTCATTCTCTATCT 	3
---------------------------------------------------------------------------ATGCGTGCTCATTCTCTATCTGTC 	2
----------------------------------------------------------------------------TGCGTGCTCATTCTCTATCTGTC 	2
-----------------------------------------------------------------------------GCGTGCTCATTCTCTATCTGTCAC 	3
--------------------------------------------------------------------------------TGCTCATTCTCTATCTGTCACCCA 	3
--------------------------------------------------------------------------------TGCTCATTCTCTATCTGTCACC 	2
----------------------------------------------------------------------------------CTCATTCTCTATCTGTCACCCATC 	3


Overlaps with miRBase pre-miRNAs: gma-MIR156x
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Glycine max GSM852280 TGACAGAAGAGAGTGAGCACA TGCTCACCACTCTTTCTGTCGGT up 1 2


Secondary structure

TCCTTACATTTGGACAGAAATTGACAGAAGAGAGTGAGCACAAAGAGGCACTTGATATAATTCTATATCACTGCTTTTGTGTGCTCACCACTCTTTCTGTCGGTTTTCATGTGCCAGAAAAT
--------------------TTGACAGAAGAGAGTGAGCACAAA 	3
--------------------TTGACAGAAGAGAGTGAGCAC 	2
---------------------TGACAGAAGAGAGTGAGCACA 	8
---------------------TGACAGAAGAGAGTGAGCA 	3
----------------------GACAGAAGAGAGTGAGCAC 	1
----------------------GACAGAAGAGAGTGAGCAC 	1


Overlaps with miRBase pre-miRNAs: gma-MIR156n
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Glycine max GSM852280 TGACAGAAGAGAGTGAGCACA TGCTCACTTCTCTTTCTGTCAAC up 1 2


Secondary structure

GACATAGAAATTGACAGAAGAGAGTGAGCACACAGAGGCACTTGGTATAGTATATATACTATTGCTTTTGCGTGCTCACTTCTCTTTCTGTCAACTTCCAGTG
----------TTGACAGAAGAGAGTGAGCAC 	2
-----------TGACAGAAGAGAGTGAGCACA 	8
-----------TGACAGAAGAGAGTGAGCA 	3
------------GACAGAAGAGAGTGAGCAC 	1
------------GACAGAAGAGAGTGAGCAC 	1


Overlaps with miRBase pre-miRNAs: gma-MIR156k
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Glycine max GSM852280 TGACAGAAGAGAGTGAGCACA TGCTCACTTCTCTATCTGTCAGC up 1 2


Secondary structure

CAGAGAGAGGCTGACAGAAGAGAGTGAGCACATACTAGTGGAGATTGTATGAGGGCATACAATTGCGGGTGCGTGCTCACTTCTCTATCTGTCAGCTTCCCATT
-----------TGACAGAAGAGAGTGAGCACA 	8
-----------TGACAGAAGAGAGTGAGCA 	3
------------GACAGAAGAGAGTGAGCAC 	1
------------GACAGAAGAGAGTGAGCAC 	1
--------------------------------------------------------------------------GCTCACTTCTCTATCTGTCAGC 	6


Overlaps with miRBase pre-miRNAs: gma-MIR156u
HuntMi prediction: true miRNA