miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGACATGGGACTGCCTAAGCTA

selected species: Arabidopsis thaliana



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Arabidopsis thaliana GSM304282 TGACATGGGACTGCCTAAGCTA GCTTGGCAATCTCATGTCAAA down 1 1


Secondary structure

AACTTTCAGATTGCACAAGAGAATATGAAAAAGTATTAACACAAGCCTTATAGCTTGGCAATCTCATGTCAAATAAGGAAAAGAAGAGGAACCCAAGGTATGTTTCTCATCTACCTTCTTTGACATGGGACTGCCTAAGCTAAAGGCTTGCCATGTTATCACATCCTTCTTTCATTTCGTCGCAACCACTT
----------------------------------------------------------------------------------------------------------TCATCTACCTTCTTTGACATGGGA 	1
------------------------------------------------------------------------------------------------------------------------TGACATGGGACTGCCTAAGCTA 	6
------------------------------------------------------------------------------------------------------------------------TGACATGGGACTGCCTAAGCT 	1
---------------------------------------------------------------------------------------------------------------------------CATGGGACTGCCTAAGCTAAAGGC 	1
----------------------------------------------------------------------------------------------------------------------------ATGGGACTGCCTAAGCTAAAGGCT 	1
-----------------------------------------------------------------------------------------------------------------------------TGGGACTGCCTAAGCTAAAGGCTT 	1

Overlaps with: MNEST040173 MNEST047079
Overlaps with miRBase pre-miRNAs: ath-MIR848
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Arabidopsis thaliana GSM415786-5994 TGACATGGGACTGCCTAAGCTA GCTTGGCAATCTCATGTCAAA down 1 1


Secondary structure

AACTTTCAGATTGCACAAGAGAATATGAAAAAGTATTAACACAAGCCTTATAGCTTGGCAATCTCATGTCAAATAAGGAAAAGAAGAGGAACCCAAGGTATGTTTCTCATCTACCTTCTTTGACATGGGACTGCCTAAGCTAAAGGCTTGCCATGTTATCACATCCTTCTTTCATTTCGTCGCAACCACTT
-----------------------------------------------TTATAGCTTGGCAATCTCATG 	1
-----------------------------------------------------------------------------------------------------------------------TTGACATGGGACTGCCTAAGC 	4
------------------------------------------------------------------------------------------------------------------------TGACATGGGACTGCCTAAGCTAA 	1
------------------------------------------------------------------------------------------------------------------------TGACATGGGACTGCCTAAGCTA 	44
------------------------------------------------------------------------------------------------------------------------TGACATGGGACTGCCTAAGC 	3

Overlaps with: MNEST040173 MNEST047079
Overlaps with miRBase pre-miRNAs: ath-MIR848
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Arabidopsis thaliana GSM366870 TGACATGGGACTGCCTAAGCTA GCTTGGCAATCTCATGTCAAA down 1 1


Secondary structure

AACTTTCAGATTGCACAAGAGAATATGAAAAAGTATTAACACAAGCCTTATAGCTTGGCAATCTCATGTCAAATAAGGAAAAGAAGAGGAACCCAAGGTATGTTTCTCATCTACCTTCTTTGACATGGGACTGCCTAAGCTAAAGGCTTGCCATGTTATCACATCCTTCTTTCATTTCGTCGCAACCACTT
-----------------------------------------------------------------------------------------------------------------------TTGACATGGGACTGCCTAAGC 	4
------------------------------------------------------------------------------------------------------------------------TGACATGGGACTGCCTAAGCTA 	20

Overlaps with: MNEST040173 MNEST047079
Overlaps with miRBase pre-miRNAs: ath-MIR848
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Arabidopsis thaliana GSM366866 TGACATGGGACTGCCTAAGCTA GCTTGGCAATCTCATGTCAAA down 1 1


Secondary structure

AACTTTCAGATTGCACAAGAGAATATGAAAAAGTATTAACACAAGCCTTATAGCTTGGCAATCTCATGTCAAATAAGGAAAAGAAGAGGAACCCAAGGTATGTTTCTCATCTACCTTCTTTGACATGGGACTGCCTAAGCTAAAGGCTTGCCATGTTATCACATCCTTCTTTCATTTCGTCGCAACCACTT
------------------------------------------------------------------------------------------------------------------------TGACATGGGACTGCCTAAGCTA 	7
--------------------------------------------------------------------------------------------------------------------------ACATGGGACTGCCTAAGCTAA 	2
---------------------------------------------------------------------------------------------------------------------------CATGGGACTGCCTAAGCTAAAGGC 	1
---------------------------------------------------------------------------------------------------------------------------CATGGGACTGCCTAAGCTAAAGGCT 	1
----------------------------------------------------------------------------------------------------------------------------ATGGGACTGCCTAAGCTAAAGGCT 	1
-----------------------------------------------------------------------------------------------------------------------------TGGGACTGCCTAAGCTAAAGGCTT 	2

Overlaps with: MNEST040173 MNEST047079
Overlaps with miRBase pre-miRNAs: ath-MIR848
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Arabidopsis thaliana GSM518432-13544 TGACATGGGACTGCCTAAGCTA GCTTGGCAATCTCATGTCAAA down 1 1


Secondary structure

AACTTTCAGATTGCACAAGAGAATATGAAAAAGTATTAACACAAGCCTTATAGCTTGGCAATCTCATGTCAAATAAGGAAAAGAAGAGGAACCCAAGGTATGTTTCTCATCTACCTTCTTTGACATGGGACTGCCTAAGCTAAAGGCTTGCCATGTTATCACATCCTTCTTTCATTTCGTCGCAACCACTT
----------------------------------------------------------------------------------------------------------TCATCTACCTTCTTTGACA 	1
----------------------------------------------------------------------------------------------------------------------TTTGACATGGGACTGCCTAAG 	1
-----------------------------------------------------------------------------------------------------------------------TTGACATGGGACTGCCTAAG 	1
-----------------------------------------------------------------------------------------------------------------------TTGACATGGGACTGCCTAAGC 	7
------------------------------------------------------------------------------------------------------------------------TGACATGGGACTGCCTAAGC 	1
------------------------------------------------------------------------------------------------------------------------TGACATGGGACTGCCTAAGCTA 	32
-----------------------------------------------------------------------------------------------------------------------------TGGGACTGCCTAAGCTAAAGGCTT 	19
-----------------------------------------------------------------------------------------------------------------------------TGGGACTGCCTAAGCTAAAGGC 	2

Overlaps with: MNEST040173 MNEST047079
Overlaps with miRBase pre-miRNAs: ath-MIR848
HuntMi prediction: true miRNA