miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGACGGGTCGTGATGGGCACT

selected species: Physcomitrella patens



37 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM115097 TGACGGGTCGTGATGGGCACT TGCCCAACACGATCTGTCAAC down 3 0


Secondary structure

GGAATTGATGGGATGTTGGGCATGCCCAACACGATCTGTCAACATTCTATGTTATATTGACGGGTCGTGATGGGCACTCTCAATGTCCACTTCATGA
----------------------TGCCCAACACGATCTGTCAAC 	3
----------------------TGCCCAACACGATCTGTCAA 	1
--------------------------------------------------------TTGACGGGTCGTGATGGGCACT 	2
---------------------------------------------------------TGACGGGTCGTGATGGGCACTC 	54
---------------------------------------------------------TGACGGGTCGTGATGGGCACT 	138
---------------------------------------------------------TGACGGGTCGTGATGGGCAC 	2
---------------------------------------------------------TGACGGGTCGTGATGGGCA 	1
----------------------------------------------------------GACGGGTCGTGATGGGCACTC 	36
----------------------------------------------------------GACGGGTCGTGATGGGCACT 	18
-----------------------------------------------------------ACGGGTCGTGATGGGCACT 	5
-----------------------------------------------------------ACGGGTCGTGATGGGCACTC 	23


Overlaps with: MNEST039610 MNEST051473
Overlaps with miRBase pre-miRNAs: ppt-MIR1033c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM115097 TGACGGGTCGTGATGGGCACT TGTCCAGCACAACCTGTCAAC down 3 0


Secondary structure

ACTAAGATAACATTCGGCAGGGGTGTTGGGAATGTCCAGCACAACCTGTCAACATTCCAGGTTATGTTGACGGGTCGTGATGGGCACTCTCAGCGTCCCATGCCCAAACTGCACATC
-------------------------------ATGTCCAGCACAACCTGTCAAC 	6
--------------------------------TGTCCAGCACAACCTGTCAACAT 	1
-----------------------------------------------------------------GTTGACGGGTCGTGATGGGCACT 	1
------------------------------------------------------------------TTGACGGGTCGTGATGGGCACT 	2
-------------------------------------------------------------------TGACGGGTCGTGATGGGCACTC 	54
-------------------------------------------------------------------TGACGGGTCGTGATGGGCACT 	138
-------------------------------------------------------------------TGACGGGTCGTGATGGGCAC 	2
-------------------------------------------------------------------TGACGGGTCGTGATGGGCA 	1
--------------------------------------------------------------------GACGGGTCGTGATGGGCACTC 	36
--------------------------------------------------------------------GACGGGTCGTGATGGGCACT 	18
---------------------------------------------------------------------ACGGGTCGTGATGGGCACT 	5
---------------------------------------------------------------------ACGGGTCGTGATGGGCACTC 	23


Overlaps with: MNEST039612 MNEST051475
Overlaps with miRBase pre-miRNAs: ppt-MIR1033e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM115097 TGACGGGTCGTGATGGGCACT TGCTCAACACGATCTGTCAAC down 3 0


Secondary structure

GGAGATGATGGGATGTTGGGCATGCTCAACACGATCTGTCAACATTCTAGAGTATATTGACGGGTCGTGATGGGCACTCTCAATGTCCACTTCATGG
---------------------ATGCTCAACACGATCTGTCAA 	2
---------------------ATGCTCAACACGATCTGTCAAC 	3
----------------------TGCTCAACACGATCTGTCAACA 	5
----------------------TGCTCAACACGATCTGTCAAC 	40
----------------------TGCTCAACACGATCTGTCAA 	7
----------------------TGCTCAACACGATCTGTCA 	3
--------------------------------------------------------TTGACGGGTCGTGATGGGCACT 	2
---------------------------------------------------------TGACGGGTCGTGATGGGCACTC 	54
---------------------------------------------------------TGACGGGTCGTGATGGGCACT 	138
---------------------------------------------------------TGACGGGTCGTGATGGGCAC 	2
---------------------------------------------------------TGACGGGTCGTGATGGGCA 	1
----------------------------------------------------------GACGGGTCGTGATGGGCACTC 	36
----------------------------------------------------------GACGGGTCGTGATGGGCACT 	18
-----------------------------------------------------------ACGGGTCGTGATGGGCACT 	5
-----------------------------------------------------------ACGGGTCGTGATGGGCACTC 	23


Overlaps with: MNEST039609 MNEST051472
Overlaps with miRBase pre-miRNAs: ppt-MIR1033b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Physcomitrella patens GSM115097 TGACGGGTCGTGATGGGCACT TGTCCATCACAACCTGCCAAC down 3 0


Secondary structure

TGGCATTGGGAATGTCCATCACAACCTGCCAACATTCCAGGTTATGTTGACGGGTCGTGATGGGCACTCTCAGCGTC
-----------ATGTCCATCACAACCTGCCAAC 	21
-----------ATGTCCATCACAACCTGCC 	2
------------TGTCCATCACAACCTGCCAACA 	1
------------TGTCCATCACAACCTGCCAAC 	3
---------------------------------------------GTTGACGGGTCGTGATGGGCACT 	1
----------------------------------------------TTGACGGGTCGTGATGGGCACT 	2
-----------------------------------------------TGACGGGTCGTGATGGGCACTC 	54
-----------------------------------------------TGACGGGTCGTGATGGGCACT 	138
-----------------------------------------------TGACGGGTCGTGATGGGCAC 	2
-----------------------------------------------TGACGGGTCGTGATGGGCA 	1
------------------------------------------------GACGGGTCGTGATGGGCACTC 	36
------------------------------------------------GACGGGTCGTGATGGGCACT 	18
-------------------------------------------------ACGGGTCGTGATGGGCACT 	5
-------------------------------------------------ACGGGTCGTGATGGGCACTC 	23


Overlaps with: MNEST039608 MNEST051471
Overlaps with miRBase pre-miRNAs: ppt-MIR1033a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Physcomitrella patens GSM115097 TGACGGGTCGTGATGGGCACT TGTCCATGACGATCTGTCAAC down 2 0


Secondary structure

TCGCATTGGGAATGTCCATGACGATCTGTCAACATTTCAGGTTATGTTGACGGGTCGTGATGGGCACTCTCACTGTC
-----------ATGTCCATGACGATCTGTCAAC 	1
-----------ATGTCCATGACGATCTGTCAA 	3
---------------------------------------------GTTGACGGGTCGTGATGGGCACT 	1
----------------------------------------------TTGACGGGTCGTGATGGGCACT 	2
-----------------------------------------------TGACGGGTCGTGATGGGCACTC 	54
-----------------------------------------------TGACGGGTCGTGATGGGCACT 	138
-----------------------------------------------TGACGGGTCGTGATGGGCAC 	2
-----------------------------------------------TGACGGGTCGTGATGGGCA 	1
------------------------------------------------GACGGGTCGTGATGGGCACTC 	36
------------------------------------------------GACGGGTCGTGATGGGCACT 	18
-------------------------------------------------ACGGGTCGTGATGGGCACT 	5
-------------------------------------------------ACGGGTCGTGATGGGCACTC 	23


Overlaps with: MNEST039611 MNEST051474
Overlaps with miRBase pre-miRNAs: ppt-MIR1033d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Physcomitrella patens GSM313212 TGACGGGTCGTGATGGGCACT TGCCCAACACGATCTGTCAAC down 3 0


Secondary structure

GGAATTGATGGGATGTTGGGCATGCCCAACACGATCTGTCAACATTCTATGTTATATTGACGGGTCGTGATGGGCACTCTCAATGTCCACTTCATGA
----------------------TGCCCAACACGATCTGTCAAC 	2
-------------------------------------------------------ATTGACGGGTCGTGATGGGCACT 	4
--------------------------------------------------------TTGACGGGTCGTGATGGGCACT 	1
---------------------------------------------------------TGACGGGTCGTGATGGGCACT 	148
---------------------------------------------------------TGACGGGTCGTGATGGGCACTCT 	4
---------------------------------------------------------TGACGGGTCGTGATGGGCACTC 	62
----------------------------------------------------------GACGGGTCGTGATGGGCACT 	36
----------------------------------------------------------GACGGGTCGTGATGGGCACTC 	35
----------------------------------------------------------GACGGGTCGTGATGGGCACTCT 	1
-----------------------------------------------------------ACGGGTCGTGATGGGCACTC 	8
-----------------------------------------------------------ACGGGTCGTGATGGGCACT 	1


Overlaps with: MNEST039610 MNEST051473
Overlaps with miRBase pre-miRNAs: ppt-MIR1033c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Physcomitrella patens GSM313212 TGACGGGTCGTGATGGGCACT TGTCCAGCACAACCTGTCAAC down 3 0


Secondary structure

ACTAAGATAACATTCGGCAGGGGTGTTGGGAATGTCCAGCACAACCTGTCAACATTCCAGGTTATGTTGACGGGTCGTGATGGGCACTCTCAGCGTCCCATGCCCAAACTGCACATC
-----------------------------------------------------------------GTTGACGGGTCGTGATGGGCACT 	1
------------------------------------------------------------------TTGACGGGTCGTGATGGGCACT 	1
-------------------------------------------------------------------TGACGGGTCGTGATGGGCACT 	148
-------------------------------------------------------------------TGACGGGTCGTGATGGGCACTCT 	4
-------------------------------------------------------------------TGACGGGTCGTGATGGGCACTC 	62
--------------------------------------------------------------------GACGGGTCGTGATGGGCACT 	36
--------------------------------------------------------------------GACGGGTCGTGATGGGCACTC 	35
--------------------------------------------------------------------GACGGGTCGTGATGGGCACTCT 	1
---------------------------------------------------------------------ACGGGTCGTGATGGGCACTC 	8
---------------------------------------------------------------------ACGGGTCGTGATGGGCACT 	1


Overlaps with: MNEST039612 MNEST051475
Overlaps with miRBase pre-miRNAs: ppt-MIR1033e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Physcomitrella patens GSM313212 TGACGGGTCGTGATGGGCACT TGCTCAACACGATCTGTCAAC down 3 0


Secondary structure

GGAGATGATGGGATGTTGGGCATGCTCAACACGATCTGTCAACATTCTAGAGTATATTGACGGGTCGTGATGGGCACTCTCAATGTCCACTTCATGG
--------TGGGATGTTGGGCATGCTCAAC 	1
---------------------ATGCTCAACACGATCTGTCAACA 	9
---------------------ATGCTCAACACGATCTGTCA 	1
---------------------ATGCTCAACACGATCTGTCAAC 	9
---------------------ATGCTCAACACGATCTGTCAA 	3
----------------------TGCTCAACACGATCTGTCAAC 	21
----------------------TGCTCAACACGATCTGTCA 	1
----------------------TGCTCAACACGATCTGTCAACAT 	4
----------------------TGCTCAACACGATCTGTCAACA 	2
----------------------TGCTCAACACGATCTGTCAA 	7
----------------------TGCTCAACACGATCTGTCAACATT 	1
-----------------------GCTCAACACGATCTGTCAACATT 	1
-----------------------GCTCAACACGATCTGTCAAC 	1
-------------------------------------------------------ATTGACGGGTCGTGATGGGCACT 	4
--------------------------------------------------------TTGACGGGTCGTGATGGGCACT 	1
---------------------------------------------------------TGACGGGTCGTGATGGGCACT 	148
---------------------------------------------------------TGACGGGTCGTGATGGGCACTCT 	4
---------------------------------------------------------TGACGGGTCGTGATGGGCACTC 	62
----------------------------------------------------------GACGGGTCGTGATGGGCACT 	36
----------------------------------------------------------GACGGGTCGTGATGGGCACTC 	35
----------------------------------------------------------GACGGGTCGTGATGGGCACTCT 	1
-----------------------------------------------------------ACGGGTCGTGATGGGCACTC 	8
-----------------------------------------------------------ACGGGTCGTGATGGGCACT 	1


Overlaps with: MNEST039609 MNEST051472
Overlaps with miRBase pre-miRNAs: ppt-MIR1033b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Physcomitrella patens GSM313212 TGACGGGTCGTGATGGGCACT TGTCCATCACAACCTGCCAAC down 3 0


Secondary structure

TGGCATTGGGAATGTCCATCACAACCTGCCAACATTCCAGGTTATGTTGACGGGTCGTGATGGGCACTCTCAGCGTC
TGGCATTGGGAATGTCCATC 	1
-----------ATGTCCATCACAACCTGCCAAC 	4
-----------ATGTCCATCACAACCTGCCA 	2
-----------ATGTCCATCACAACCTGCCAA 	2
---------------------------------------------GTTGACGGGTCGTGATGGGCACT 	1
----------------------------------------------TTGACGGGTCGTGATGGGCACT 	1
-----------------------------------------------TGACGGGTCGTGATGGGCACT 	148
-----------------------------------------------TGACGGGTCGTGATGGGCACTCT 	4
-----------------------------------------------TGACGGGTCGTGATGGGCACTC 	62
------------------------------------------------GACGGGTCGTGATGGGCACT 	36
------------------------------------------------GACGGGTCGTGATGGGCACTC 	35
------------------------------------------------GACGGGTCGTGATGGGCACTCT 	1
-------------------------------------------------ACGGGTCGTGATGGGCACTC 	8
-------------------------------------------------ACGGGTCGTGATGGGCACT 	1


Overlaps with: MNEST039608 MNEST051471
Overlaps with miRBase pre-miRNAs: ppt-MIR1033a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Physcomitrella patens GSM313212 TGACGGGTCGTGATGGGCACT TGTCCATGACGATCTGTCAAC down 2 0


Secondary structure

TCGCATTGGGAATGTCCATGACGATCTGTCAACATTTCAGGTTATGTTGACGGGTCGTGATGGGCACTCTCACTGTC
-----------ATGTCCATGACGATCTGTCAAC 	11
-----------ATGTCCATGACGATCTGTCAA 	25
---------------------------------------------GTTGACGGGTCGTGATGGGCACT 	1
----------------------------------------------TTGACGGGTCGTGATGGGCACT 	1
-----------------------------------------------TGACGGGTCGTGATGGGCACT 	148
-----------------------------------------------TGACGGGTCGTGATGGGCACTCT 	4
-----------------------------------------------TGACGGGTCGTGATGGGCACTC 	62
------------------------------------------------GACGGGTCGTGATGGGCACT 	36
------------------------------------------------GACGGGTCGTGATGGGCACTC 	35
------------------------------------------------GACGGGTCGTGATGGGCACTCT 	1
-------------------------------------------------ACGGGTCGTGATGGGCACTC 	8
-------------------------------------------------ACGGGTCGTGATGGGCACT 	1


Overlaps with: MNEST039611 MNEST051474
Overlaps with miRBase pre-miRNAs: ppt-MIR1033d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Physcomitrella patens GSM313213 TGACGGGTCGTGATGGGCACT TGCCCAACACGATCTGTCAAC down 3 0


Secondary structure

GGAATTGATGGGATGTTGGGCATGCCCAACACGATCTGTCAACATTCTATGTTATATTGACGGGTCGTGATGGGCACTCTCAATGTCCACTTCATGA
---------------------ATGCCCAACACGATCTGTCAA 	1
---------------------ATGCCCAACACGATCTGTCAACA 	1
----------------------TGCCCAACACGATCTGTCAAC 	3
-------------------------------------------------------ATTGACGGGTCGTGATGGGCACT 	3
--------------------------------------------------------TTGACGGGTCGTGATGGGCACT 	3
---------------------------------------------------------TGACGGGTCGTGATGGGCAC 	1
---------------------------------------------------------TGACGGGTCGTGATGGGCACT 	147
---------------------------------------------------------TGACGGGTCGTGATGGGCACTC 	60
----------------------------------------------------------GACGGGTCGTGATGGGCACT 	31
----------------------------------------------------------GACGGGTCGTGATGGGCACTC 	32
----------------------------------------------------------GACGGGTCGTGATGGGCACTCT 	1
-----------------------------------------------------------ACGGGTCGTGATGGGCACTC 	5
-----------------------------------------------------------ACGGGTCGTGATGGGCACT 	2
-------------------------------------------------------------------TGATGGGCACTCTCAATGTCC 	1
--------------------------------------------------------------------GATGGGCACTCTCAATGTCCA 	1


Overlaps with: MNEST039610 MNEST051473
Overlaps with miRBase pre-miRNAs: ppt-MIR1033c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Physcomitrella patens GSM313213 TGACGGGTCGTGATGGGCACT TGTCCAGCACAACCTGTCAAC down 3 0


Secondary structure

ACTAAGATAACATTCGGCAGGGGTGTTGGGAATGTCCAGCACAACCTGTCAACATTCCAGGTTATGTTGACGGGTCGTGATGGGCACTCTCAGCGTCCCATGCCCAAACTGCACATC
-----------------------------------------------------------------GTTGACGGGTCGTGATGGGCACT 	1
------------------------------------------------------------------TTGACGGGTCGTGATGGGCACT 	3
-------------------------------------------------------------------TGACGGGTCGTGATGGGCAC 	1
-------------------------------------------------------------------TGACGGGTCGTGATGGGCACT 	147
-------------------------------------------------------------------TGACGGGTCGTGATGGGCACTC 	60
--------------------------------------------------------------------GACGGGTCGTGATGGGCACT 	31
--------------------------------------------------------------------GACGGGTCGTGATGGGCACTC 	32
--------------------------------------------------------------------GACGGGTCGTGATGGGCACTCT 	1
---------------------------------------------------------------------ACGGGTCGTGATGGGCACTC 	5
---------------------------------------------------------------------ACGGGTCGTGATGGGCACT 	2


Overlaps with: MNEST039612 MNEST051475
Overlaps with miRBase pre-miRNAs: ppt-MIR1033e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Physcomitrella patens GSM313213 TGACGGGTCGTGATGGGCACT TGCTCAACACGATCTGTCAAC down 3 0


Secondary structure

GGAGATGATGGGATGTTGGGCATGCTCAACACGATCTGTCAACATTCTAGAGTATATTGACGGGTCGTGATGGGCACTCTCAATGTCCACTTCATGG
-------------TGTTGGGCATGCTCAACAC 	3
-------------TGTTGGGCATGCTCAACACG 	1
---------------------ATGCTCAACACGATCTGTCAACATT 	2
---------------------ATGCTCAACACGATCTGTCAACA 	3
---------------------ATGCTCAACACGATCTGTCA 	1
---------------------ATGCTCAACACGATCTGTCAAC 	12
---------------------ATGCTCAACACGATCTGTCAACAT 	1
---------------------ATGCTCAACACGATCTGTCAA 	1
----------------------TGCTCAACACGATCTGTCAAC 	24
----------------------TGCTCAACACGATCTGTCA 	2
----------------------TGCTCAACACGATCTGTCAACATTCT 	1
----------------------TGCTCAACACGATCTGTCAACAT 	3
----------------------TGCTCAACACGATCTGTCAA 	2
----------------------TGCTCAACACGATCTGTCAACATT 	1
----------------------TGCTCAACACGATCTGTCAACA 	1
-----------------------GCTCAACACGATCTGTCAACAT 	1
-----------------------GCTCAACACGATCTGTCAACATT 	1
-----------------------GCTCAACACGATCTGTCAACA 	1
------------------------CTCAACACGATCTGTCAAC 	1
-------------------------------------------------------ATTGACGGGTCGTGATGGGCACT 	3
--------------------------------------------------------TTGACGGGTCGTGATGGGCACT 	3
---------------------------------------------------------TGACGGGTCGTGATGGGCAC 	1
---------------------------------------------------------TGACGGGTCGTGATGGGCACT 	147
---------------------------------------------------------TGACGGGTCGTGATGGGCACTC 	60
----------------------------------------------------------GACGGGTCGTGATGGGCACT 	31
----------------------------------------------------------GACGGGTCGTGATGGGCACTC 	32
----------------------------------------------------------GACGGGTCGTGATGGGCACTCT 	1
-----------------------------------------------------------ACGGGTCGTGATGGGCACTC 	5
-----------------------------------------------------------ACGGGTCGTGATGGGCACT 	2
-------------------------------------------------------------------TGATGGGCACTCTCAATGTCC 	1
--------------------------------------------------------------------GATGGGCACTCTCAATGTCCA 	1


Overlaps with: MNEST039609 MNEST051472
Overlaps with miRBase pre-miRNAs: ppt-MIR1033b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Physcomitrella patens GSM313213 TGACGGGTCGTGATGGGCACT TGTCCATCACAACCTGCCAAC down 3 0


Secondary structure

TGGCATTGGGAATGTCCATCACAACCTGCCAACATTCCAGGTTATGTTGACGGGTCGTGATGGGCACTCTCAGCGTC
TGGCATTGGGAATGTCCATC 	1
-----------ATGTCCATCACAACCTGCCAAC 	7
-----------ATGTCCATCACAACCTGCCA 	1
-----------ATGTCCATCACAACCTGCCAA 	2
---------------------------------------------GTTGACGGGTCGTGATGGGCACT 	1
----------------------------------------------TTGACGGGTCGTGATGGGCACT 	3
-----------------------------------------------TGACGGGTCGTGATGGGCAC 	1
-----------------------------------------------TGACGGGTCGTGATGGGCACT 	147
-----------------------------------------------TGACGGGTCGTGATGGGCACTC 	60
------------------------------------------------GACGGGTCGTGATGGGCACT 	31
------------------------------------------------GACGGGTCGTGATGGGCACTC 	32
------------------------------------------------GACGGGTCGTGATGGGCACTCT 	1
-------------------------------------------------ACGGGTCGTGATGGGCACTC 	5
-------------------------------------------------ACGGGTCGTGATGGGCACT 	2


Overlaps with: MNEST039608 MNEST051471
Overlaps with miRBase pre-miRNAs: ppt-MIR1033a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Physcomitrella patens GSM313213 TGACGGGTCGTGATGGGCACT TGTCCATGACGATCTGTCAAC down 2 0


Secondary structure

TCGCATTGGGAATGTCCATGACGATCTGTCAACATTTCAGGTTATGTTGACGGGTCGTGATGGGCACTCTCACTGTC
-----------ATGTCCATGACGATCTGTCAAC 	11
-----------ATGTCCATGACGATCTGTCAACAT 	1
-----------ATGTCCATGACGATCTGTCAA 	24
---------------------------------------------GTTGACGGGTCGTGATGGGCACT 	1
----------------------------------------------TTGACGGGTCGTGATGGGCACT 	3
-----------------------------------------------TGACGGGTCGTGATGGGCAC 	1
-----------------------------------------------TGACGGGTCGTGATGGGCACT 	147
-----------------------------------------------TGACGGGTCGTGATGGGCACTC 	60
------------------------------------------------GACGGGTCGTGATGGGCACT 	31
------------------------------------------------GACGGGTCGTGATGGGCACTC 	32
------------------------------------------------GACGGGTCGTGATGGGCACTCT 	1
-------------------------------------------------ACGGGTCGTGATGGGCACTC 	5
-------------------------------------------------ACGGGTCGTGATGGGCACT 	2


Overlaps with: MNEST039611 MNEST051474
Overlaps with miRBase pre-miRNAs: ppt-MIR1033d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Physcomitrella patens GSM313215 TGACGGGTCGTGATGGGCACT TGCCCAACACGATCTGTCAAC down 3 0


Secondary structure

GGAATTGATGGGATGTTGGGCATGCCCAACACGATCTGTCAACATTCTATGTTATATTGACGGGTCGTGATGGGCACTCTCAATGTCCACTTCATGA
----------------------TGCCCAACACGATCTGTCAAC 	11
----------------------TGCCCAACACGATCTGTCAACATTC 	1
-----------------------GCCCAACACGATCTGTCAAC 	1
------------------------CCCAACACGATCTGTCAAC 	1
-----------------------------------------------------ATATTGACGGGTCGTGATGGGCACT 	1
------------------------------------------------------TATTGACGGGTCGTGATGGG 	1
-------------------------------------------------------ATTGACGGGTCGTGATGGG 	10
---------------------------------------------------------TGACGGGTCGTGATGGGCACT 	63
---------------------------------------------------------TGACGGGTCGTGATGGGCAC 	3
---------------------------------------------------------TGACGGGTCGTGATGGGCACTC 	18
----------------------------------------------------------GACGGGTCGTGATGGGCACTC 	17
----------------------------------------------------------GACGGGTCGTGATGGGCACT 	18
-----------------------------------------------------------ACGGGTCGTGATGGGCACTC 	13
-----------------------------------------------------------ACGGGTCGTGATGGGCACT 	5
------------------------------------------------------------CGGGTCGTGATGGGCACTC 	1


Overlaps with: MNEST039610 MNEST051473
Overlaps with miRBase pre-miRNAs: ppt-MIR1033c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Physcomitrella patens GSM313215 TGACGGGTCGTGATGGGCACT TGTCCAGCACAACCTGTCAAC down 3 0


Secondary structure

ACTAAGATAACATTCGGCAGGGGTGTTGGGAATGTCCAGCACAACCTGTCAACATTCCAGGTTATGTTGACGGGTCGTGATGGGCACTCTCAGCGTCCCATGCCCAAACTGCACATC
-----------------------------------------------------------------GTTGACGGGTCGTGATGGG 	2
-------------------------------------------------------------------TGACGGGTCGTGATGGGCACT 	63
-------------------------------------------------------------------TGACGGGTCGTGATGGGCAC 	3
-------------------------------------------------------------------TGACGGGTCGTGATGGGCACTC 	18
--------------------------------------------------------------------GACGGGTCGTGATGGGCACTC 	17
--------------------------------------------------------------------GACGGGTCGTGATGGGCACT 	18
---------------------------------------------------------------------ACGGGTCGTGATGGGCACTC 	13
---------------------------------------------------------------------ACGGGTCGTGATGGGCACT 	5
----------------------------------------------------------------------CGGGTCGTGATGGGCACTC 	1


Overlaps with: MNEST039612 MNEST051475
Overlaps with miRBase pre-miRNAs: ppt-MIR1033e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
18 Physcomitrella patens GSM313215 TGACGGGTCGTGATGGGCACT TGCTCAACACGATCTGTCAAC down 3 0


Secondary structure

GGAGATGATGGGATGTTGGGCATGCTCAACACGATCTGTCAACATTCTAGAGTATATTGACGGGTCGTGATGGGCACTCTCAATGTCCACTTCATGG
---------------------ATGCTCAACACGATCTGTCA 	1
---------------------ATGCTCAACACGATCTGTCAAC 	6
---------------------ATGCTCAACACGATCTGTCAA 	7
----------------------TGCTCAACACGATCTGTCAACATTC 	2
----------------------TGCTCAACACGATCTGTCAAC 	53
----------------------TGCTCAACACGATCTGTCAACATTCT 	1
----------------------TGCTCAACACGATCTGTCAACA 	2
----------------------TGCTCAACACGATCTGTCAACATT 	1
----------------------TGCTCAACACGATCTGTCAA 	3
------------------------CTCAACACGATCTGTCAAC 	1
------------------------------------------------AGAGTATATTGACGGGTCGTGATGGG 	1
--------------------------------------------------AGTATATTGACGGGTCGTGATGGG 	1
-----------------------------------------------------ATATTGACGGGTCGTGATGGGCACT 	1
------------------------------------------------------TATTGACGGGTCGTGATGGG 	1
-------------------------------------------------------ATTGACGGGTCGTGATGGG 	10
---------------------------------------------------------TGACGGGTCGTGATGGGCACT 	63
---------------------------------------------------------TGACGGGTCGTGATGGGCAC 	3
---------------------------------------------------------TGACGGGTCGTGATGGGCACTC 	18
----------------------------------------------------------GACGGGTCGTGATGGGCACTC 	17
----------------------------------------------------------GACGGGTCGTGATGGGCACT 	18
-----------------------------------------------------------ACGGGTCGTGATGGGCACTC 	13
-----------------------------------------------------------ACGGGTCGTGATGGGCACT 	5
------------------------------------------------------------CGGGTCGTGATGGGCACTC 	1


Overlaps with: MNEST039609 MNEST051472
Overlaps with miRBase pre-miRNAs: ppt-MIR1033b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
19 Physcomitrella patens GSM313215 TGACGGGTCGTGATGGGCACT TGTCCATCACAACCTGCCAAC down 3 0


Secondary structure

TGGCATTGGGAATGTCCATCACAACCTGCCAACATTCCAGGTTATGTTGACGGGTCGTGATGGGCACTCTCAGCGTC
-----------ATGTCCATCACAACCTGCCAAC 	17
-----------ATGTCCATCACAACCTGCCAA 	7
------------TGTCCATCACAACCTGCCAAC 	1
---------------------------------------------GTTGACGGGTCGTGATGGG 	2
-----------------------------------------------TGACGGGTCGTGATGGGCACT 	63
-----------------------------------------------TGACGGGTCGTGATGGGCAC 	3
-----------------------------------------------TGACGGGTCGTGATGGGCACTC 	18
------------------------------------------------GACGGGTCGTGATGGGCACTC 	17
------------------------------------------------GACGGGTCGTGATGGGCACT 	18
-------------------------------------------------ACGGGTCGTGATGGGCACTC 	13
-------------------------------------------------ACGGGTCGTGATGGGCACT 	5
--------------------------------------------------CGGGTCGTGATGGGCACTC 	1


Overlaps with: MNEST039608 MNEST051471
Overlaps with miRBase pre-miRNAs: ppt-MIR1033a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
20 Physcomitrella patens GSM313215 TGACGGGTCGTGATGGGCACT TGTCCATGACGATCTGTCAAC down 2 0


Secondary structure

TCGCATTGGGAATGTCCATGACGATCTGTCAACATTTCAGGTTATGTTGACGGGTCGTGATGGGCACTCTCACTGTC
-----------ATGTCCATGACGATCTGTCAAC 	5
-----------ATGTCCATGACGATCTGTCAA 	7
-----------ATGTCCATGACGATCTGTCA 	1
---------------------------------------------GTTGACGGGTCGTGATGGG 	2
-----------------------------------------------TGACGGGTCGTGATGGGCACT 	63
-----------------------------------------------TGACGGGTCGTGATGGGCAC 	3
-----------------------------------------------TGACGGGTCGTGATGGGCACTC 	18
------------------------------------------------GACGGGTCGTGATGGGCACTC 	17
------------------------------------------------GACGGGTCGTGATGGGCACT 	18
-------------------------------------------------ACGGGTCGTGATGGGCACTC 	13
-------------------------------------------------ACGGGTCGTGATGGGCACT 	5
--------------------------------------------------CGGGTCGTGATGGGCACTC 	1


Overlaps with: MNEST039611 MNEST051474
Overlaps with miRBase pre-miRNAs: ppt-MIR1033d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
21 Physcomitrella patens GSM115096 TGACGGGTCGTGATGGGCACTC ATGCCCAACACGATCTGTCAAC down 3 0


Secondary structure

TGGAATTGATGGGATGTTGGGCATGCCCAACACGATCTGTCAACATTCTATGTTATATTGACGGGTCGTGATGGGCACTCTCAATGTCCACTTCATGAT
-----------------------TGCCCAACACGATCTGTCAAC 	2
--------------------------------------------------------ATTGACGGGTCGTGATGGGCACT 	3
---------------------------------------------------------TTGACGGGTCGTGATGGGCACT 	1
----------------------------------------------------------TGACGGGTCGTGATGGGCACTC 	18
----------------------------------------------------------TGACGGGTCGTGATGGGCACT 	12
----------------------------------------------------------TGACGGGTCGTGATGGGCA 	1
-----------------------------------------------------------GACGGGTCGTGATGGGCACTC 	4
-----------------------------------------------------------GACGGGTCGTGATGGGCACT 	5
------------------------------------------------------------ACGGGTCGTGATGGGCACTC 	1
-------------------------------------------------------------CGGGTCGTGATGGGCACTC 	1


Overlaps with: MNEST039610 MNEST051473
Overlaps with miRBase pre-miRNAs: ppt-MIR1033c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
22 Physcomitrella patens GSM115096 TGACGGGTCGTGATGGGCACTC ATGTCCAGCACAACCTGTCAAC down 3 0


Secondary structure

GACTAAGATAACATTCGGCAGGGGTGTTGGGAATGTCCAGCACAACCTGTCAACATTCCAGGTTATGTTGACGGGTCGTGATGGGCACTCTCAGCGTCCCATGCCCAAACTGCACATCA
--------------------------------ATGTCCAGCACAACCTGTCAAC 	2
-------------------------------------------------------------------TTGACGGGTCGTGATGGGCACT 	1
--------------------------------------------------------------------TGACGGGTCGTGATGGGCACTC 	18
--------------------------------------------------------------------TGACGGGTCGTGATGGGCACT 	12
--------------------------------------------------------------------TGACGGGTCGTGATGGGCA 	1
---------------------------------------------------------------------GACGGGTCGTGATGGGCACTC 	4
---------------------------------------------------------------------GACGGGTCGTGATGGGCACT 	5
----------------------------------------------------------------------ACGGGTCGTGATGGGCACTC 	1
-----------------------------------------------------------------------CGGGTCGTGATGGGCACTC 	1


Overlaps with: MNEST039612 MNEST051475
Overlaps with miRBase pre-miRNAs: ppt-MIR1033e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
23 Physcomitrella patens GSM115096 TGACGGGTCGTGATGGGCACTC ATGTCCATGACGATCTGTCAAC down 2 0


Secondary structure

GTCGCATTGGGAATGTCCATGACGATCTGTCAACATTTCAGGTTATGTTGACGGGTCGTGATGGGCACTCTCACTGTCT
------------ATGTCCATGACGATCTGTCAAC 	2
------------ATGTCCATGACGATCTGTCA 	1
------------ATGTCCATGACGATCTGTCAA 	6
-----------------------------------------------TTGACGGGTCGTGATGGGCACT 	1
------------------------------------------------TGACGGGTCGTGATGGGCACTC 	18
------------------------------------------------TGACGGGTCGTGATGGGCACT 	12
------------------------------------------------TGACGGGTCGTGATGGGCA 	1
-------------------------------------------------GACGGGTCGTGATGGGCACTC 	4
-------------------------------------------------GACGGGTCGTGATGGGCACT 	5
--------------------------------------------------ACGGGTCGTGATGGGCACTC 	1
---------------------------------------------------CGGGTCGTGATGGGCACTC 	1


Overlaps with: MNEST039611 MNEST051474
Overlaps with miRBase pre-miRNAs: ppt-MIR1033d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
24 Physcomitrella patens GSM313216 TGACGGGTCGTGATGGGCACTC ATGCCCAACACGATCTGTCAAC down 3 0


Secondary structure

TGGAATTGATGGGATGTTGGGCATGCCCAACACGATCTGTCAACATTCTATGTTATATTGACGGGTCGTGATGGGCACTCTCAATGTCCACTTCATGAT
----------------------ATGCCCAACACGATCTGTCAACAT 	1
----------------------ATGCCCAACACGATCTGTCAAC 	1
-----------------------TGCCCAACACGATCTGTCAAC 	9
------------------------GCCCAACACGATCTGTCAAC 	1
-----------------------------------------------------TATATTGACGGGTCGTGATGGGCACT 	1
------------------------------------------------------ATATTGACGGGTCGTGATGGGCACT 	1
--------------------------------------------------------ATTGACGGGTCGTGATGGGCAC 	1
--------------------------------------------------------ATTGACGGGTCGTGATGGGCACTC 	2
--------------------------------------------------------ATTGACGGGTCGTGATGGGCACT 	1
--------------------------------------------------------ATTGACGGGTCGTGATGGGCA 	1
---------------------------------------------------------TTGACGGGTCGTGATGGGCACT 	2
----------------------------------------------------------TGACGGGTCGTGATGGGCAC 	13
----------------------------------------------------------TGACGGGTCGTGATGGGCACT 	101
----------------------------------------------------------TGACGGGTCGTGATGGGCACTCT 	9
----------------------------------------------------------TGACGGGTCGTGATGGGCA 	2
----------------------------------------------------------TGACGGGTCGTGATGGGCACTC 	249
-----------------------------------------------------------GACGGGTCGTGATGGGCAC 	5
-----------------------------------------------------------GACGGGTCGTGATGGGCACT 	26
-----------------------------------------------------------GACGGGTCGTGATGGGCACTC 	211
-----------------------------------------------------------GACGGGTCGTGATGGGCACTCT 	4
------------------------------------------------------------ACGGGTCGTGATGGGCACTC 	66
------------------------------------------------------------ACGGGTCGTGATGGGCACTCT 	1
------------------------------------------------------------ACGGGTCGTGATGGGCACT 	6


Overlaps with: MNEST039610 MNEST051473
Overlaps with miRBase pre-miRNAs: ppt-MIR1033c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
25 Physcomitrella patens GSM313216 TGACGGGTCGTGATGGGCACTC ATGTCCAGCACAACCTGTCAAC down 3 0


Secondary structure

GACTAAGATAACATTCGGCAGGGGTGTTGGGAATGTCCAGCACAACCTGTCAACATTCCAGGTTATGTTGACGGGTCGTGATGGGCACTCTCAGCGTCCCATGCCCAAACTGCACATCA
------------------------------------------------------------------GTTGACGGGTCGTGATGGGCACTC 	1
------------------------------------------------------------------GTTGACGGGTCGTGATGGGCACT 	1
-------------------------------------------------------------------TTGACGGGTCGTGATGGGCACT 	2
--------------------------------------------------------------------TGACGGGTCGTGATGGGCAC 	13
--------------------------------------------------------------------TGACGGGTCGTGATGGGCACT 	101
--------------------------------------------------------------------TGACGGGTCGTGATGGGCACTCT 	9
--------------------------------------------------------------------TGACGGGTCGTGATGGGCA 	2
--------------------------------------------------------------------TGACGGGTCGTGATGGGCACTC 	249
---------------------------------------------------------------------GACGGGTCGTGATGGGCAC 	5
---------------------------------------------------------------------GACGGGTCGTGATGGGCACT 	26
---------------------------------------------------------------------GACGGGTCGTGATGGGCACTC 	211
---------------------------------------------------------------------GACGGGTCGTGATGGGCACTCT 	4
----------------------------------------------------------------------ACGGGTCGTGATGGGCACTC 	66
----------------------------------------------------------------------ACGGGTCGTGATGGGCACTCT 	1
----------------------------------------------------------------------ACGGGTCGTGATGGGCACT 	6


Overlaps with: MNEST039612 MNEST051475
Overlaps with miRBase pre-miRNAs: ppt-MIR1033e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
26 Physcomitrella patens GSM313216 TGACGGGTCGTGATGGGCACTC ATGCTCAACACGATCTGTCAAC down 3 0


Secondary structure

TGGAGATGATGGGATGTTGGGCATGCTCAACACGATCTGTCAACATTCTAGAGTATATTGACGGGTCGTGATGGGCACTCTCAATGTCCACTTCATGGT
------------GATGTTGGGCATGCTCAACAC 	1
--------------TGTTGGGCATGCTCAACAC 	1
----------------------ATGCTCAACACGATCTGTCAACA 	4
----------------------ATGCTCAACACGATCTGTCAA 	9
----------------------ATGCTCAACACGATCTGTCAACATT 	1
----------------------ATGCTCAACACGATCTGTCA 	3
----------------------ATGCTCAACACGATCTGTCAAC 	33
----------------------ATGCTCAACACGATCTGTCAACAT 	1
-----------------------TGCTCAACACGATCTGTCAAC 	105
-----------------------TGCTCAACACGATCTGTCAACATT 	3
-----------------------TGCTCAACACGATCTGTCAACAT 	3
-----------------------TGCTCAACACGATCTGTCAA 	21
-----------------------TGCTCAACACGATCTGTCAACA 	6
-----------------------TGCTCAACACGATCTGTCAACATTC 	1
------------------------GCTCAACACGATCTGTCAACA 	2
------------------------GCTCAACACGATCTGTCAAC 	3
-------------------------CTCAACACGATCTGTCAAC 	1
-----------------------------------------------------TATATTGACGGGTCGTGATGGGCACT 	1
------------------------------------------------------ATATTGACGGGTCGTGATGGGCACT 	1
--------------------------------------------------------ATTGACGGGTCGTGATGGGCAC 	1
--------------------------------------------------------ATTGACGGGTCGTGATGGGCACTC 	2
--------------------------------------------------------ATTGACGGGTCGTGATGGGCACT 	1
--------------------------------------------------------ATTGACGGGTCGTGATGGGCA 	1
---------------------------------------------------------TTGACGGGTCGTGATGGGCACT 	2
----------------------------------------------------------TGACGGGTCGTGATGGGCAC 	13
----------------------------------------------------------TGACGGGTCGTGATGGGCACT 	101
----------------------------------------------------------TGACGGGTCGTGATGGGCACTCT 	9
----------------------------------------------------------TGACGGGTCGTGATGGGCA 	2
----------------------------------------------------------TGACGGGTCGTGATGGGCACTC 	249
-----------------------------------------------------------GACGGGTCGTGATGGGCAC 	5
-----------------------------------------------------------GACGGGTCGTGATGGGCACT 	26
-----------------------------------------------------------GACGGGTCGTGATGGGCACTC 	211
-----------------------------------------------------------GACGGGTCGTGATGGGCACTCT 	4
------------------------------------------------------------ACGGGTCGTGATGGGCACTC 	66
------------------------------------------------------------ACGGGTCGTGATGGGCACTCT 	1
------------------------------------------------------------ACGGGTCGTGATGGGCACT 	6


Overlaps with: MNEST039609 MNEST051472
Overlaps with miRBase pre-miRNAs: ppt-MIR1033b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
27 Physcomitrella patens GSM313216 TGACGGGTCGTGATGGGCACTC ATGTCCATCACAACCTGCCAAC down 3 0


Secondary structure

GTGGCATTGGGAATGTCCATCACAACCTGCCAACATTCCAGGTTATGTTGACGGGTCGTGATGGGCACTCTCAGCGTCT
-TGGCATTGGGAATGTCCATCA 	1
------------ATGTCCATCACAACCTGCCAAC 	57
------------ATGTCCATCACAACCTGCCAA 	4
----------------------------------------------GTTGACGGGTCGTGATGGGCACTC 	1
----------------------------------------------GTTGACGGGTCGTGATGGGCACT 	1
-----------------------------------------------TTGACGGGTCGTGATGGGCACT 	2
------------------------------------------------TGACGGGTCGTGATGGGCAC 	13
------------------------------------------------TGACGGGTCGTGATGGGCACT 	101
------------------------------------------------TGACGGGTCGTGATGGGCACTCT 	9
------------------------------------------------TGACGGGTCGTGATGGGCA 	2
------------------------------------------------TGACGGGTCGTGATGGGCACTC 	249
-------------------------------------------------GACGGGTCGTGATGGGCAC 	5
-------------------------------------------------GACGGGTCGTGATGGGCACT 	26
-------------------------------------------------GACGGGTCGTGATGGGCACTC 	211
-------------------------------------------------GACGGGTCGTGATGGGCACTCT 	4
--------------------------------------------------ACGGGTCGTGATGGGCACTC 	66
--------------------------------------------------ACGGGTCGTGATGGGCACTCT 	1
--------------------------------------------------ACGGGTCGTGATGGGCACT 	6


Overlaps with: MNEST039608 MNEST051471
Overlaps with miRBase pre-miRNAs: ppt-MIR1033a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
28 Physcomitrella patens GSM313216 TGACGGGTCGTGATGGGCACTC ATGTCCATGACGATCTGTCAAC down 2 0


Secondary structure

GTCGCATTGGGAATGTCCATGACGATCTGTCAACATTTCAGGTTATGTTGACGGGTCGTGATGGGCACTCTCACTGTCT
------------ATGTCCATGACGATCTGTCAAC 	29
------------ATGTCCATGACGATCTGTCAA 	20
------------ATGTCCATGACGATCTGTCA 	1
----------------------------------------------GTTGACGGGTCGTGATGGGCACTC 	1
----------------------------------------------GTTGACGGGTCGTGATGGGCACT 	1
-----------------------------------------------TTGACGGGTCGTGATGGGCACT 	2
------------------------------------------------TGACGGGTCGTGATGGGCAC 	13
------------------------------------------------TGACGGGTCGTGATGGGCACT 	101
------------------------------------------------TGACGGGTCGTGATGGGCACTCT 	9
------------------------------------------------TGACGGGTCGTGATGGGCA 	2
------------------------------------------------TGACGGGTCGTGATGGGCACTC 	249
-------------------------------------------------GACGGGTCGTGATGGGCAC 	5
-------------------------------------------------GACGGGTCGTGATGGGCACT 	26
-------------------------------------------------GACGGGTCGTGATGGGCACTC 	211
-------------------------------------------------GACGGGTCGTGATGGGCACTCT 	4
--------------------------------------------------ACGGGTCGTGATGGGCACTC 	66
--------------------------------------------------ACGGGTCGTGATGGGCACTCT 	1
--------------------------------------------------ACGGGTCGTGATGGGCACT 	6


Overlaps with: MNEST039611 MNEST051474
Overlaps with miRBase pre-miRNAs: ppt-MIR1033d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
29 Physcomitrella patens GSM313214 TGACGGGTCGTGATGGGCACT TGCCCAACACGATCTGTCAAC down 3 0


Secondary structure

GGAATTGATGGGATGTTGGGCATGCCCAACACGATCTGTCAACATTCTATGTTATATTGACGGGTCGTGATGGGCACTCTCAATGTCCACTTCATGA
---------------------ATGCCCAACACGATCTGTCAA 	1
----------------------TGCCCAACACGATCTGTCA 	1
----------------------TGCCCAACACGATCTGTCAAC 	15
----------------------TGCCCAACACGATCTGTCAA 	2
-----------------------GCCCAACACGATCTGTCAAC 	1
-----------------------------------------------------ATATTGACGGGTCGTGATGGGCACT 	1
------------------------------------------------------TATTGACGGGTCGTGATGGGCACT 	1
-------------------------------------------------------ATTGACGGGTCGTGATGGG 	6
--------------------------------------------------------TTGACGGGTCGTGATGGGCACT 	2
---------------------------------------------------------TGACGGGTCGTGATGGGCACT 	116
---------------------------------------------------------TGACGGGTCGTGATGGGCACTCT 	3
---------------------------------------------------------TGACGGGTCGTGATGGGCA 	3
---------------------------------------------------------TGACGGGTCGTGATGGGCAC 	3
---------------------------------------------------------TGACGGGTCGTGATGGGCACTC 	73
----------------------------------------------------------GACGGGTCGTGATGGGCACT 	30
----------------------------------------------------------GACGGGTCGTGATGGGCACTC 	61
-----------------------------------------------------------ACGGGTCGTGATGGGCACTC 	19
-----------------------------------------------------------ACGGGTCGTGATGGGCACT 	13
--------------------------------------------------------------------GATGGGCACTCTCAATGTC 	1
----------------------------------------------------------------------TGGGCACTCTCAATGTCCACT 	1


Overlaps with: MNEST039610 MNEST051473
Overlaps with miRBase pre-miRNAs: ppt-MIR1033c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
30 Physcomitrella patens GSM313214 TGACGGGTCGTGATGGGCACT TGTCCAGCACAACCTGTCAAC down 3 0


Secondary structure

ACTAAGATAACATTCGGCAGGGGTGTTGGGAATGTCCAGCACAACCTGTCAACATTCCAGGTTATGTTGACGGGTCGTGATGGGCACTCTCAGCGTCCCATGCCCAAACTGCACATC
-----------------------------------------------------------------GTTGACGGGTCGTGATGGG 	2
------------------------------------------------------------------TTGACGGGTCGTGATGGGCACT 	2
-------------------------------------------------------------------TGACGGGTCGTGATGGGCACT 	116
-------------------------------------------------------------------TGACGGGTCGTGATGGGCACTCT 	3
-------------------------------------------------------------------TGACGGGTCGTGATGGGCA 	3
-------------------------------------------------------------------TGACGGGTCGTGATGGGCAC 	3
-------------------------------------------------------------------TGACGGGTCGTGATGGGCACTC 	73
--------------------------------------------------------------------GACGGGTCGTGATGGGCACT 	30
--------------------------------------------------------------------GACGGGTCGTGATGGGCACTC 	61
---------------------------------------------------------------------ACGGGTCGTGATGGGCACTC 	19
---------------------------------------------------------------------ACGGGTCGTGATGGGCACT 	13


Overlaps with: MNEST039612 MNEST051475
Overlaps with miRBase pre-miRNAs: ppt-MIR1033e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
31 Physcomitrella patens GSM313214 TGACGGGTCGTGATGGGCACT TGTCCATCACAACCTGCCAAC down 3 0


Secondary structure

TGGCATTGGGAATGTCCATCACAACCTGCCAACATTCCAGGTTATGTTGACGGGTCGTGATGGGCACTCTCAGCGTC
TGGCATTGGGAATGTCCATCA 	2
-----------ATGTCCATCACAACCTGCC 	1
-----------ATGTCCATCACAACCTGCCAAC 	30
-----------ATGTCCATCACAACCTGCCA 	4
-----------ATGTCCATCACAACCTGCCAACATTC 	1
-----------ATGTCCATCACAACCTGCCAA 	6
------------TGTCCATCACAACCTGCCAAC 	3
---------------------------------------------GTTGACGGGTCGTGATGGG 	2
----------------------------------------------TTGACGGGTCGTGATGGGCACT 	2
-----------------------------------------------TGACGGGTCGTGATGGGCACT 	116
-----------------------------------------------TGACGGGTCGTGATGGGCACTCT 	3
-----------------------------------------------TGACGGGTCGTGATGGGCA 	3
-----------------------------------------------TGACGGGTCGTGATGGGCAC 	3
-----------------------------------------------TGACGGGTCGTGATGGGCACTC 	73
------------------------------------------------GACGGGTCGTGATGGGCACT 	30
------------------------------------------------GACGGGTCGTGATGGGCACTC 	61
-------------------------------------------------ACGGGTCGTGATGGGCACTC 	19
-------------------------------------------------ACGGGTCGTGATGGGCACT 	13


Overlaps with: MNEST039608 MNEST051471
Overlaps with miRBase pre-miRNAs: ppt-MIR1033a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
32 Physcomitrella patens GSM313214 TGACGGGTCGTGATGGGCACT TGTCCATGACGATCTGTCAAC down 2 0


Secondary structure

TCGCATTGGGAATGTCCATGACGATCTGTCAACATTTCAGGTTATGTTGACGGGTCGTGATGGGCACTCTCACTGTC
-----------ATGTCCATGACGATCTGTCAA 	6
-----------ATGTCCATGACGATCTGTCA 	1
-----------ATGTCCATGACGATCTGTCAAC 	4
---------------------------------------------GTTGACGGGTCGTGATGGG 	2
----------------------------------------------TTGACGGGTCGTGATGGGCACT 	2
-----------------------------------------------TGACGGGTCGTGATGGGCACT 	116
-----------------------------------------------TGACGGGTCGTGATGGGCACTCT 	3
-----------------------------------------------TGACGGGTCGTGATGGGCA 	3
-----------------------------------------------TGACGGGTCGTGATGGGCAC 	3
-----------------------------------------------TGACGGGTCGTGATGGGCACTC 	73
------------------------------------------------GACGGGTCGTGATGGGCACT 	30
------------------------------------------------GACGGGTCGTGATGGGCACTC 	61
-------------------------------------------------ACGGGTCGTGATGGGCACTC 	19
-------------------------------------------------ACGGGTCGTGATGGGCACT 	13


Overlaps with: MNEST039611 MNEST051474
Overlaps with miRBase pre-miRNAs: ppt-MIR1033d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
33 Physcomitrella patens GSM313217 TGACGGGTCGTGATGGGCACTC ATGCCCAACACGATCTGTCAAC down 3 0


Secondary structure

TGGAATTGATGGGATGTTGGGCATGCCCAACACGATCTGTCAACATTCTATGTTATATTGACGGGTCGTGATGGGCACTCTCAATGTCCACTTCATGAT
----------------------ATGCCCAACACGATCTGTCAAC 	3
----------------------ATGCCCAACACGATCTGTCA 	1
-----------------------TGCCCAACACGATCTGTCAAC 	2
--------------------------------------------------------ATTGACGGGTCGTGATGGGCAC 	4
--------------------------------------------------------ATTGACGGGTCGTGATGGGCACTC 	3
--------------------------------------------------------ATTGACGGGTCGTGATGGGCACT 	2
---------------------------------------------------------TTGACGGGTCGTGATGGGCACTC 	2
----------------------------------------------------------TGACGGGTCGTGATGGGCAC 	9
----------------------------------------------------------TGACGGGTCGTGATGGGCACT 	74
----------------------------------------------------------TGACGGGTCGTGATGGGCACTCT 	6
----------------------------------------------------------TGACGGGTCGTGATGGGCA 	4
----------------------------------------------------------TGACGGGTCGTGATGGGCACTC 	269
-----------------------------------------------------------GACGGGTCGTGATGGGCAC 	2
-----------------------------------------------------------GACGGGTCGTGATGGGCACT 	22
-----------------------------------------------------------GACGGGTCGTGATGGGCACTC 	196
-----------------------------------------------------------GACGGGTCGTGATGGGCACTCT 	2
------------------------------------------------------------ACGGGTCGTGATGGGCACTCT 	1
------------------------------------------------------------ACGGGTCGTGATGGGCACTC 	52
------------------------------------------------------------ACGGGTCGTGATGGGCACT 	10
-------------------------------------------------------------CGGGTCGTGATGGGCACTCT 	1
-------------------------------------------------------------CGGGTCGTGATGGGCACTC 	2
--------------------------------------------------------------------TGATGGGCACTCTCAATGTC 	1


Overlaps with: MNEST039610 MNEST051473
Overlaps with miRBase pre-miRNAs: ppt-MIR1033c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
34 Physcomitrella patens GSM313217 TGACGGGTCGTGATGGGCACTC ATGTCCAGCACAACCTGTCAAC down 3 0


Secondary structure

GACTAAGATAACATTCGGCAGGGGTGTTGGGAATGTCCAGCACAACCTGTCAACATTCCAGGTTATGTTGACGGGTCGTGATGGGCACTCTCAGCGTCCCATGCCCAAACTGCACATCA
------------------------------------------------------------------GTTGACGGGTCGTGATGGGCACTC 	1
-------------------------------------------------------------------TTGACGGGTCGTGATGGGCACTC 	2
--------------------------------------------------------------------TGACGGGTCGTGATGGGCAC 	9
--------------------------------------------------------------------TGACGGGTCGTGATGGGCACT 	74
--------------------------------------------------------------------TGACGGGTCGTGATGGGCACTCT 	6
--------------------------------------------------------------------TGACGGGTCGTGATGGGCA 	4
--------------------------------------------------------------------TGACGGGTCGTGATGGGCACTC 	269
---------------------------------------------------------------------GACGGGTCGTGATGGGCAC 	2
---------------------------------------------------------------------GACGGGTCGTGATGGGCACT 	22
---------------------------------------------------------------------GACGGGTCGTGATGGGCACTC 	196
---------------------------------------------------------------------GACGGGTCGTGATGGGCACTCT 	2
----------------------------------------------------------------------ACGGGTCGTGATGGGCACTCT 	1
----------------------------------------------------------------------ACGGGTCGTGATGGGCACTC 	52
----------------------------------------------------------------------ACGGGTCGTGATGGGCACT 	10
-----------------------------------------------------------------------CGGGTCGTGATGGGCACTCT 	1
-----------------------------------------------------------------------CGGGTCGTGATGGGCACTC 	2


Overlaps with: MNEST039612 MNEST051475
Overlaps with miRBase pre-miRNAs: ppt-MIR1033e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
35 Physcomitrella patens GSM313217 TGACGGGTCGTGATGGGCACTC ATGCTCAACACGATCTGTCAAC down 3 0


Secondary structure

TGGAGATGATGGGATGTTGGGCATGCTCAACACGATCTGTCAACATTCTAGAGTATATTGACGGGTCGTGATGGGCACTCTCAATGTCCACTTCATGGT
------------GATGTTGGGCATGCTCAACAC 	2
---------------------CATGCTCAACACGATCTGTCA 	1
----------------------ATGCTCAACACGATCTGTCAACA 	3
----------------------ATGCTCAACACGATCTGTCAACATT 	2
----------------------ATGCTCAACACGATCTGTCA 	2
----------------------ATGCTCAACACGATCTGTCAAC 	30
----------------------ATGCTCAACACGATCTGTCAACAT 	2
----------------------ATGCTCAACACGATCTGTCAA 	12
-----------------------TGCTCAACACGATCTGTCAAC 	91
-----------------------TGCTCAACACGATCTGTCA 	1
-----------------------TGCTCAACACGATCTGTCAACAT 	2
-----------------------TGCTCAACACGATCTGTCAA 	21
-----------------------TGCTCAACACGATCTGTCAACATT 	1
-----------------------TGCTCAACACGATCTGTCAACA 	2
-----------------------TGCTCAACACGATCTGTCAACATTC 	2
--------------------------TCAACACGATCTGTCAACATTCT 	1
--------------------------------------------------------ATTGACGGGTCGTGATGGGCAC 	4
--------------------------------------------------------ATTGACGGGTCGTGATGGGCACTC 	3
--------------------------------------------------------ATTGACGGGTCGTGATGGGCACT 	2
---------------------------------------------------------TTGACGGGTCGTGATGGGCACTC 	2
----------------------------------------------------------TGACGGGTCGTGATGGGCAC 	9
----------------------------------------------------------TGACGGGTCGTGATGGGCACT 	74
----------------------------------------------------------TGACGGGTCGTGATGGGCACTCT 	6
----------------------------------------------------------TGACGGGTCGTGATGGGCA 	4
----------------------------------------------------------TGACGGGTCGTGATGGGCACTC 	269
-----------------------------------------------------------GACGGGTCGTGATGGGCAC 	2
-----------------------------------------------------------GACGGGTCGTGATGGGCACT 	22
-----------------------------------------------------------GACGGGTCGTGATGGGCACTC 	196
-----------------------------------------------------------GACGGGTCGTGATGGGCACTCT 	2
------------------------------------------------------------ACGGGTCGTGATGGGCACTCT 	1
------------------------------------------------------------ACGGGTCGTGATGGGCACTC 	52
------------------------------------------------------------ACGGGTCGTGATGGGCACT 	10
-------------------------------------------------------------CGGGTCGTGATGGGCACTCT 	1
-------------------------------------------------------------CGGGTCGTGATGGGCACTC 	2
--------------------------------------------------------------------TGATGGGCACTCTCAATGTC 	1


Overlaps with: MNEST039609 MNEST051472
Overlaps with miRBase pre-miRNAs: ppt-MIR1033b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
36 Physcomitrella patens GSM313217 TGACGGGTCGTGATGGGCACTC ATGTCCATCACAACCTGCCAAC down 3 0


Secondary structure

GTGGCATTGGGAATGTCCATCACAACCTGCCAACATTCCAGGTTATGTTGACGGGTCGTGATGGGCACTCTCAGCGTCT
------------ATGTCCATCACAACCTGCCAAC 	49
------------ATGTCCATCACAACCTGCCAACATT 	1
------------ATGTCCATCACAACCTGCCAA 	4
----------------------------------------------GTTGACGGGTCGTGATGGGCACTC 	1
-----------------------------------------------TTGACGGGTCGTGATGGGCACTC 	2
------------------------------------------------TGACGGGTCGTGATGGGCAC 	9
------------------------------------------------TGACGGGTCGTGATGGGCACT 	74
------------------------------------------------TGACGGGTCGTGATGGGCACTCT 	6
------------------------------------------------TGACGGGTCGTGATGGGCA 	4
------------------------------------------------TGACGGGTCGTGATGGGCACTC 	269
-------------------------------------------------GACGGGTCGTGATGGGCAC 	2
-------------------------------------------------GACGGGTCGTGATGGGCACT 	22
-------------------------------------------------GACGGGTCGTGATGGGCACTC 	196
-------------------------------------------------GACGGGTCGTGATGGGCACTCT 	2
--------------------------------------------------ACGGGTCGTGATGGGCACTCT 	1
--------------------------------------------------ACGGGTCGTGATGGGCACTC 	52
--------------------------------------------------ACGGGTCGTGATGGGCACT 	10
---------------------------------------------------CGGGTCGTGATGGGCACTCT 	1
---------------------------------------------------CGGGTCGTGATGGGCACTC 	2


Overlaps with: MNEST039608 MNEST051471
Overlaps with miRBase pre-miRNAs: ppt-MIR1033a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
37 Physcomitrella patens GSM313217 TGACGGGTCGTGATGGGCACTC ATGTCCATGACGATCTGTCAAC down 2 0


Secondary structure

GTCGCATTGGGAATGTCCATGACGATCTGTCAACATTTCAGGTTATGTTGACGGGTCGTGATGGGCACTCTCACTGTCT
------------ATGTCCATGACGATCTGTCAAC 	22
------------ATGTCCATGACGATCTGTCAA 	14
------------ATGTCCATGACGATCTGTCAACA 	1
------------ATGTCCATGACGATCTGTCA 	1
-------------TGTCCATGACGATCTGTCAA 	1
----------------------------------------------GTTGACGGGTCGTGATGGGCACTC 	1
-----------------------------------------------TTGACGGGTCGTGATGGGCACTC 	2
------------------------------------------------TGACGGGTCGTGATGGGCAC 	9
------------------------------------------------TGACGGGTCGTGATGGGCACT 	74
------------------------------------------------TGACGGGTCGTGATGGGCACTCT 	6
------------------------------------------------TGACGGGTCGTGATGGGCA 	4
------------------------------------------------TGACGGGTCGTGATGGGCACTC 	269
-------------------------------------------------GACGGGTCGTGATGGGCAC 	2
-------------------------------------------------GACGGGTCGTGATGGGCACT 	22
-------------------------------------------------GACGGGTCGTGATGGGCACTC 	196
-------------------------------------------------GACGGGTCGTGATGGGCACTCT 	2
--------------------------------------------------ACGGGTCGTGATGGGCACTCT 	1
--------------------------------------------------ACGGGTCGTGATGGGCACTC 	52
--------------------------------------------------ACGGGTCGTGATGGGCACT 	10
---------------------------------------------------CGGGTCGTGATGGGCACTCT 	1
---------------------------------------------------CGGGTCGTGATGGGCACTC 	2


Overlaps with: MNEST039611 MNEST051474
Overlaps with miRBase pre-miRNAs: ppt-MIR1033d
HuntMi prediction: true miRNA