miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TGACTAGAACCGTTACTCATC

selected species: Caenorhabditis elegans



9 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Caenorhabditis elegans GSM427344-5691 TGACTAGAACCGTTACTCATC TGGGTTACGGGGCTTAGTCCTT down 4 1


Secondary structure

CCATTATCGCTGAACCTCGAGATGGGTTACGGGGCTTAGTCCTTCCTCCGTATGGCAATGACTAGAACCGTTACTCATCTCGAGGTTTCGGTGATCCT
-------------------AGATGGGTTACGGGGCTTAGTC 	2
----------------------TGGGTTACGGGGCTTAGTCCTT 	12
----------------------TGGGTTACGGGGCTTAGTCCT 	3
---------------------------------------------------------ATGACTAGAACCGTTACTCATC 	2
----------------------------------------------------------TGACTAGAACCGTTACTCATCT 	53
----------------------------------------------------------TGACTAGAACCGTTACTCATC 	772
----------------------------------------------------------TGACTAGAACCGTTACTCAT 	15
----------------------------------------------------------TGACTAGAACCGTTACTCA 	6
-----------------------------------------------------------GACTAGAACCGTTACTCATC 	2
------------------------------------------------------------ACTAGAACCGTTACTCATC 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Caenorhabditis elegans GSM427332-5684 TGACTAGAACCGTTACTCATC TGGGTTACGGGGCTTAGTCCTT down 4 1


Secondary structure

CCATTATCGCTGAACCTCGAGATGGGTTACGGGGCTTAGTCCTTCCTCCGTATGGCAATGACTAGAACCGTTACTCATCTCGAGGTTTCGGTGATCCT
-------------------AGATGGGTTACGGGGCTTAGTC 	1
-------------------AGATGGGTTACGGGGCTTAGTCCT 	1
-------------------AGATGGGTTACGGGGCTTAGTCCTT 	1
---------------------ATGGGTTACGGGGCTTAGTCCT 	1
----------------------TGGGTTACGGGGCTTAGTCCTT 	2
--------------------------------------------------------AATGACTAGAACCGTTACTCATC 	1
---------------------------------------------------------ATGACTAGAACCGTTACTCATC 	2
---------------------------------------------------------ATGACTAGAACCGTTACTCA 	1
----------------------------------------------------------TGACTAGAACCGTTACTCATCT 	79
----------------------------------------------------------TGACTAGAACCGTTACTCATC 	1299
----------------------------------------------------------TGACTAGAACCGTTACTCAT 	26
----------------------------------------------------------TGACTAGAACCGTTACTCA 	36
----------------------------------------------------------TGACTAGAACCGTTACTCATCTCG 	3
-----------------------------------------------------------GACTAGAACCGTTACTCATC 	2
-----------------------------------------------------------GACTAGAACCGTTACTCATCT 	1
------------------------------------------------------------ACTAGAACCGTTACTCATCTCG 	1
------------------------------------------------------------ACTAGAACCGTTACTCATCT 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Caenorhabditis elegans GSM378784 TGACTAGAACCGTTACTCATC TGGGTTACGGGGCTTAGTCCTT down 4 1


Secondary structure

CCATTATCGCTGAACCTCGAGATGGGTTACGGGGCTTAGTCCTTCCTCCGTATGGCAATGACTAGAACCGTTACTCATCTCGAGGTTTCGGTGATCCT
----------------------------------------------------------TGACTAGAACCGTTACTCATCT 	2
----------------------------------------------------------TGACTAGAACCGTTACTCATC 	10


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Caenorhabditis elegans GSM427346-5695 TGACTAGAACCGTTACTCATC TGGGTTACGGGGCTTAGTCCTT down 4 1


Secondary structure

CCATTATCGCTGAACCTCGAGATGGGTTACGGGGCTTAGTCCTTCCTCCGTATGGCAATGACTAGAACCGTTACTCATCTCGAGGTTTCGGTGATCCT
---------------------ATGGGTTACGGGGCTTAGTCCT 	1
---------------------ATGGGTTACGGGGCTTAGTCC 	1
----------------------TGGGTTACGGGGCTTAGTCCTTCC 	1
----------------------TGGGTTACGGGGCTTAGTCCTT 	2
----------------------TGGGTTACGGGGCTTAGTCCT 	2
---------------------------------------------------------ATGACTAGAACCGTTACTCATC 	2
----------------------------------------------------------TGACTAGAACCGTTACTCATCT 	63
----------------------------------------------------------TGACTAGAACCGTTACTCATC 	1010
----------------------------------------------------------TGACTAGAACCGTTACTCAT 	29
----------------------------------------------------------TGACTAGAACCGTTACTCA 	30
----------------------------------------------------------TGACTAGAACCGTTACTCATCTC 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Caenorhabditis elegans GSM427345-5693 TGACTAGAACCGTTACTCATC TGGGTTACGGGGCTTAGTCCTT down 4 1


Secondary structure

CCATTATCGCTGAACCTCGAGATGGGTTACGGGGCTTAGTCCTTCCTCCGTATGGCAATGACTAGAACCGTTACTCATCTCGAGGTTTCGGTGATCCT
----------------------TGGGTTACGGGGCTTAGTCCT 	2
---------------------------------------------------------ATGACTAGAACCGTTACTCATC 	1
----------------------------------------------------------TGACTAGAACCGTTACTCATCT 	88
----------------------------------------------------------TGACTAGAACCGTTACTCATC 	867
----------------------------------------------------------TGACTAGAACCGTTACTCAT 	20
----------------------------------------------------------TGACTAGAACCGTTACTCA 	25
----------------------------------------------------------TGACTAGAACCGTTACTCATCTCG 	2
-----------------------------------------------------------GACTAGAACCGTTACTCATC 	1
------------------------------------------------------------ACTAGAACCGTTACTCATC 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Caenorhabditis elegans GSM427297-5679 TGACTAGAACCGTTACTCATC TGGGTTACGGGGCTTAGTCCTT down 4 1


Secondary structure

CCATTATCGCTGAACCTCGAGATGGGTTACGGGGCTTAGTCCTTCCTCCGTATGGCAATGACTAGAACCGTTACTCATCTCGAGGTTTCGGTGATCCT
-------------------AGATGGGTTACGGGGCTTAGT 	1
----------------------TGGGTTACGGGGCTTAGTCCTT 	4
----------------------TGGGTTACGGGGCTTAGTCC 	1
----------------------TGGGTTACGGGGCTTAGTCCT 	1
---------------------------------------------------------ATGACTAGAACCGTTACTCATC 	3
----------------------------------------------------------TGACTAGAACCGTTACTCATCT 	105
----------------------------------------------------------TGACTAGAACCGTTACTCATC 	721
----------------------------------------------------------TGACTAGAACCGTTACTCAT 	13
----------------------------------------------------------TGACTAGAACCGTTACTCA 	12
----------------------------------------------------------TGACTAGAACCGTTACTCATCTCG 	2
-----------------------------------------------------------GACTAGAACCGTTACTCATC 	1
-------------------------------------------------------------CTAGAACCGTTACTCATCTCG 	2


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Caenorhabditis elegans GSM297751-9445 TGACTAGAACCGTTACTCATC TGGGTTACGGGGCTTAGTCCTT down 4 1


Secondary structure

CCATTATCGCTGAACCTCGAGATGGGTTACGGGGCTTAGTCCTTCCTCCGTATGGCAATGACTAGAACCGTTACTCATCTCGAGGTTTCGGTGATCCT
----------------------TGGGTTACGGGGCTTAGTCCTT 	21
----------------------TGGGTTACGGGGCTTAGTCCT 	2
---------------------------------------------------------ATGACTAGAACCGTTACTCATC 	1
----------------------------------------------------------TGACTAGAACCGTTACTCATCT 	160
----------------------------------------------------------TGACTAGAACCGTTACTCA 	7
----------------------------------------------------------TGACTAGAACCGTTACTCATC 	1205
----------------------------------------------------------TGACTAGAACCGTTACTCAT 	180
----------------------------------------------------------TGACTAGAACCGTTACTCATCTC 	1
-----------------------------------------------------------GACTAGAACCGTTACTCATC 	2
------------------------------------------------------------ACTAGAACCGTTACTCATC 	1
-------------------------------------------------------------CTAGAACCGTTACTCATCTCG 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Caenorhabditis elegans GSM297752-9446 TGACTAGAACCGTTACTCATC TGGGTTACGGGGCTTAGTCCTT down 4 1


Secondary structure

CCATTATCGCTGAACCTCGAGATGGGTTACGGGGCTTAGTCCTTCCTCCGTATGGCAATGACTAGAACCGTTACTCATCTCGAGGTTTCGGTGATCCT
----------------------TGGGTTACGGGGCTTAGTCCTT 	15
----------------------TGGGTTACGGGGCTTAGTCCT 	2
---------------------------------------------------------ATGACTAGAACCGTTACTCAT 	1
----------------------------------------------------------TGACTAGAACCGTTACTCATCT 	204
----------------------------------------------------------TGACTAGAACCGTTACTCA 	25
----------------------------------------------------------TGACTAGAACCGTTACTCATC 	1337
----------------------------------------------------------TGACTAGAACCGTTACTCAT 	230
-----------------------------------------------------------GACTAGAACCGTTACTCATC 	1
------------------------------------------------------------ACTAGAACCGTTACTCATCTCG 	2
-------------------------------------------------------------CTAGAACCGTTACTCATCT 	2


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Caenorhabditis elegans GSM427301-5681 TGACTAGAACCGTTACTCATC TGGGTTACGGGGCTTAGTCCTT down 4 1


Secondary structure

CCATTATCGCTGAACCTCGAGATGGGTTACGGGGCTTAGTCCTTCCTCCGTATGGCAATGACTAGAACCGTTACTCATCTCGAGGTTTCGGTGATCCT
----------------------TGGGTTACGGGGCTTAGTCCT 	3
----------------------TGGGTTACGGGGCTTAGTCCTT 	2
---------------------------------------------------------ATGACTAGAACCGTTACTCATC 	2
----------------------------------------------------------TGACTAGAACCGTTACTCATCT 	136
----------------------------------------------------------TGACTAGAACCGTTACTCATC 	669
----------------------------------------------------------TGACTAGAACCGTTACTCAT 	19
----------------------------------------------------------TGACTAGAACCGTTACTCA 	19
----------------------------------------------------------TGACTAGAACCGTTACTCATCTCG 	1
-----------------------------------------------------------GACTAGAACCGTTACTCATC 	1
------------------------------------------------------------ACTAGAACCGTTACTCATC 	1
-------------------------------------------------------------CTAGAACCGTTACTCATCTCG 	1


HuntMi prediction: true miRNA