miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGACTAGAGACACATTCAGCT

selected species: Caenorhabditis elegans



18 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Caenorhabditis elegans GSM427344-5691 TGACTAGAGACACATTCAGCT CTGGATGTGCTCGTTGGTCATA down 1 3


Secondary structure

CTGAAAAGAGAAAATGGCCAATCTGGATGTGCTCGTTGGTCATAGACGTCAACACGAACTGTTCATATGACTAGAGACACATTCAGCTTGGCCTGCTTCTCTAGTTT
---------------------TCTGGATGTGCTCGTTGGTCATA 	7
----------------------CTGGATGTGCTCGTTGGTCATA 	2137
----------------------CTGGATGTGCTCGTTGGTCAT 	158
----------------------CTGGATGTGCTCGTTGGTCA 	20
----------------------CTGGATGTGCTCGTTGGTC 	5
----------------------CTGGATGTGCTCGTTGGTCATAG 	1
-----------------------TGGATGTGCTCGTTGGTCATA 	14
-----------------------TGGATGTGCTCGTTGGTCAT 	1
------------------------GGATGTGCTCGTTGGTCATA 	1
--------------------------------------------GACGTCAACACGAACTGTTCATA 	6
--------------------------------------------GACGTCAACACGAACTGTTCAT 	1
--------------------------------------------GACGTCAACACGAACTGTTCA 	1
----------------------------------------------------------------ATATGACTAGAGACACATTCAGCTT 	1
----------------------------------------------------------------ATATGACTAGAGACACATTCAGCT 	1
------------------------------------------------------------------ATGACTAGAGACACATTCAGCT 	72
------------------------------------------------------------------ATGACTAGAGACACATTCAGCTT 	2
------------------------------------------------------------------ATGACTAGAGACACATTCAG 	1
------------------------------------------------------------------ATGACTAGAGACACATTCAGC 	1
-------------------------------------------------------------------TGACTAGAGACACATTCAGCTT 	3754
-------------------------------------------------------------------TGACTAGAGACACATTCAGCT 	60515
-------------------------------------------------------------------TGACTAGAGACACATTCAGC 	979
-------------------------------------------------------------------TGACTAGAGACACATTCAG 	113
-------------------------------------------------------------------TGACTAGAGACACATTCAGCTTG 	1
--------------------------------------------------------------------GACTAGAGACACATTCAGCTT 	13
--------------------------------------------------------------------GACTAGAGACACATTCAGCT 	192
--------------------------------------------------------------------GACTAGAGACACATTCAGC 	1
---------------------------------------------------------------------ACTAGAGACACATTCAGCT 	21


Overlaps with: MNEST038279 MNEST038280
Overlaps with miRBase pre-miRNAs: cel-mir-44
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Caenorhabditis elegans GSM427344-5691 TGACTAGAGACACATTCAGCT CTGGATGTGCTCGTTAGTCATA down 1 3


Secondary structure

TGCTCATGCACCATGTGCCACGCTGGATGTGCTCGTTAGTCATAATATCCTCCACAAAGCAAGGACTATGACTAGAGACACATTCAGCTTGGCGCCGAATGCATTTTA
----------------------CTGGATGTGCTCGTTAGTCATA 	12
----------------------CTGGATGTGCTCGTTAGTCAT 	1
----------------------CTGGATGTGCTCGTTAGTCA 	1
--------------------------------------------ATATCCTCCACAAAGCAAGGACTA 	4
----------------------------------------------------------------ACTATGACTAGAGACACATTCAGC 	9
----------------------------------------------------------------ACTATGACTAGAGACACATTCAGCT 	3
----------------------------------------------------------------ACTATGACTAGAGACACATTCA 	2
----------------------------------------------------------------ACTATGACTAGAGACACATTCAG 	1
-------------------------------------------------------------------ATGACTAGAGACACATTCAGCT 	72
-------------------------------------------------------------------ATGACTAGAGACACATTCAGCTT 	2
-------------------------------------------------------------------ATGACTAGAGACACATTCAG 	1
-------------------------------------------------------------------ATGACTAGAGACACATTCAGC 	1
--------------------------------------------------------------------TGACTAGAGACACATTCAGCTT 	3754
--------------------------------------------------------------------TGACTAGAGACACATTCAGCT 	60515
--------------------------------------------------------------------TGACTAGAGACACATTCAGC 	979
--------------------------------------------------------------------TGACTAGAGACACATTCAG 	113
--------------------------------------------------------------------TGACTAGAGACACATTCAGCTTG 	1
---------------------------------------------------------------------GACTAGAGACACATTCAGCTT 	13
---------------------------------------------------------------------GACTAGAGACACATTCAGCT 	192
---------------------------------------------------------------------GACTAGAGACACATTCAGC 	1
----------------------------------------------------------------------ACTAGAGACACATTCAGCT 	21


Overlaps with: MNEST038281 MNEST038282
Overlaps with miRBase pre-miRNAs: cel-mir-45
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Caenorhabditis elegans GSM427332-5684 TGACTAGAGACACATTCAGCT CTGGATGTGCTCGTTGGTCATA down 1 3


Secondary structure

CTGAAAAGAGAAAATGGCCAATCTGGATGTGCTCGTTGGTCATAGACGTCAACACGAACTGTTCATATGACTAGAGACACATTCAGCTTGGCCTGCTTCTCTAGTTT
---------------------TCTGGATGTGCTCGTTGGTCATA 	12
----------------------CTGGATGTGCTCGTTGGTCATA 	6379
----------------------CTGGATGTGCTCGTTGGTCAT 	188
----------------------CTGGATGTGCTCGTTGGTCA 	38
----------------------CTGGATGTGCTCGTTGGTC 	5
----------------------CTGGATGTGCTCGTTGGTCATAG 	2
----------------------CTGGATGTGCTCGTTGGTCATAGA 	1
------------------------GGATGTGCTCGTTGGTCATA 	2
------------------------GGATGTGCTCGTTGGTCATAGACGT 	1
-------------------------GATGTGCTCGTTGGTCATA 	5
--------------------------------------------GACGTCAACACGAACTGTTCATA 	3
----------------------------------------------------------------ATATGACTAGAGACACATTCAGCT 	12
----------------------------------------------------------------ATATGACTAGAGACACATTCAGCTT 	2
----------------------------------------------------------------ATATGACTAGAGACACATTCAGC 	2
-----------------------------------------------------------------TATGACTAGAGACACATTCAGCT 	8
------------------------------------------------------------------ATGACTAGAGACACATTCAGCT 	190
------------------------------------------------------------------ATGACTAGAGACACATTCAGCTT 	10
------------------------------------------------------------------ATGACTAGAGACACATTCAGC 	3
-------------------------------------------------------------------TGACTAGAGACACATTCAGCTT 	6640
-------------------------------------------------------------------TGACTAGAGACACATTCAGCT 	166061
-------------------------------------------------------------------TGACTAGAGACACATTCAGC 	3250
-------------------------------------------------------------------TGACTAGAGACACATTCAG 	358
-------------------------------------------------------------------TGACTAGAGACACATTCAGCTTG 	4
--------------------------------------------------------------------GACTAGAGACACATTCAGCTT 	49
--------------------------------------------------------------------GACTAGAGACACATTCAGCT 	1428
--------------------------------------------------------------------GACTAGAGACACATTCAGC 	39
---------------------------------------------------------------------ACTAGAGACACATTCAGCT 	268
---------------------------------------------------------------------ACTAGAGACACATTCAGCTT 	15
---------------------------------------------------------------------ACTAGAGACACATTCAGCTTG 	1


Overlaps with: MNEST038279 MNEST038280
Overlaps with miRBase pre-miRNAs: cel-mir-44
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Caenorhabditis elegans GSM427332-5684 TGACTAGAGACACATTCAGCT CTGGATGTGCTCGTTAGTCATA down 1 3


Secondary structure

TGCTCATGCACCATGTGCCACGCTGGATGTGCTCGTTAGTCATAATATCCTCCACAAAGCAAGGACTATGACTAGAGACACATTCAGCTTGGCGCCGAATGCATTTTA
----------------------CTGGATGTGCTCGTTAGTCATA 	153
----------------------CTGGATGTGCTCGTTAGTCAT 	3
----------------------CTGGATGTGCTCGTTAGTCA 	1
----------------------CTGGATGTGCTCGTTAGTCATAA 	1
--------------------------------------------ATATCCTCCACAAAGCAAGGACTA 	5
----------------------------------------------------------------ACTATGACTAGAGACACATTCAGC 	70
----------------------------------------------------------------ACTATGACTAGAGACACATTCAGCT 	8
----------------------------------------------------------------ACTATGACTAGAGACACATTCAG 	4
----------------------------------------------------------------ACTATGACTAGAGACACAT 	2
----------------------------------------------------------------ACTATGACTAGAGACACATTC 	2
----------------------------------------------------------------ACTATGACTAGAGACACATT 	2
----------------------------------------------------------------ACTATGACTAGAGACACATTCA 	1
----------------------------------------------------------------ACTATGACTAGAGACACATTCAGCTT 	1
-----------------------------------------------------------------CTATGACTAGAGACACATTCAG 	1
------------------------------------------------------------------TATGACTAGAGACACATTCAGCT 	8
-------------------------------------------------------------------ATGACTAGAGACACATTCAGCT 	190
-------------------------------------------------------------------ATGACTAGAGACACATTCAGCTT 	10
-------------------------------------------------------------------ATGACTAGAGACACATTCAGC 	3
--------------------------------------------------------------------TGACTAGAGACACATTCAGCTT 	6640
--------------------------------------------------------------------TGACTAGAGACACATTCAGCT 	166061
--------------------------------------------------------------------TGACTAGAGACACATTCAGC 	3250
--------------------------------------------------------------------TGACTAGAGACACATTCAG 	358
--------------------------------------------------------------------TGACTAGAGACACATTCAGCTTG 	4
---------------------------------------------------------------------GACTAGAGACACATTCAGCTT 	49
---------------------------------------------------------------------GACTAGAGACACATTCAGCT 	1428
---------------------------------------------------------------------GACTAGAGACACATTCAGC 	39
----------------------------------------------------------------------ACTAGAGACACATTCAGCT 	268
----------------------------------------------------------------------ACTAGAGACACATTCAGCTT 	15
----------------------------------------------------------------------ACTAGAGACACATTCAGCTTG 	1


Overlaps with: MNEST038281 MNEST038282
Overlaps with miRBase pre-miRNAs: cel-mir-45
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Caenorhabditis elegans GSM378784 TGACTAGAGACACATTCAGCT CTGGATGTGCTCGTTGGTCATA down 1 3


Secondary structure

CTGAAAAGAGAAAATGGCCAATCTGGATGTGCTCGTTGGTCATAGACGTCAACACGAACTGTTCATATGACTAGAGACACATTCAGCTTGGCCTGCTTCTCTAGTTT
----------------------CTGGATGTGCTCGTTGGTCAT 	7
----------------------CTGGATGTGCTCGTTGGTC 	3
-------------------------------------------------------------------TGACTAGAGACACATTCAGCTT 	18
-------------------------------------------------------------------TGACTAGAGACACATTCAGCT 	479
-------------------------------------------------------------------TGACTAGAGACACATTCAGC 	98


Overlaps with: MNEST038279 MNEST038280
Overlaps with miRBase pre-miRNAs: cel-mir-44
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Caenorhabditis elegans GSM378784 TGACTAGAGACACATTCAGCT CTGGATGTGCTCGTTAGTCATA down 1 3


Secondary structure

TGCTCATGCACCATGTGCCACGCTGGATGTGCTCGTTAGTCATAATATCCTCCACAAAGCAAGGACTATGACTAGAGACACATTCAGCTTGGCGCCGAATGCATTTTA
--------------------------------------------------------------------TGACTAGAGACACATTCAGCTT 	18
--------------------------------------------------------------------TGACTAGAGACACATTCAGCT 	479
--------------------------------------------------------------------TGACTAGAGACACATTCAGC 	98


Overlaps with: MNEST038281 MNEST038282
Overlaps with miRBase pre-miRNAs: cel-mir-45
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Caenorhabditis elegans GSM427346-5695 TGACTAGAGACACATTCAGCT CTGGATGTGCTCGTTGGTCATA down 1 3


Secondary structure

CTGAAAAGAGAAAATGGCCAATCTGGATGTGCTCGTTGGTCATAGACGTCAACACGAACTGTTCATATGACTAGAGACACATTCAGCTTGGCCTGCTTCTCTAGTTT
-------------------AATCTGGATGTGCTCGTTGGTCATA 	1
---------------------TCTGGATGTGCTCGTTGGTCATA 	2
----------------------CTGGATGTGCTCGTTGGTCATA 	1272
----------------------CTGGATGTGCTCGTTGGTCAT 	64
----------------------CTGGATGTGCTCGTTGGTCA 	9
----------------------CTGGATGTGCTCGTTGGTCATAGA 	1
-----------------------TGGATGTGCTCGTTGGTCATA 	9
-----------------------TGGATGTGCTCGTTGGTCAT 	1
----------------------------------------------------------------ATATGACTAGAGACACATTCAGCT 	1
----------------------------------------------------------------ATATGACTAGAGACACATTCAG 	1
-----------------------------------------------------------------TATGACTAGAGACACATTCAGCT 	2
------------------------------------------------------------------ATGACTAGAGACACATTCAGCT 	42
------------------------------------------------------------------ATGACTAGAGACACATTCAG 	2
------------------------------------------------------------------ATGACTAGAGACACATTCAGCTT 	1
-------------------------------------------------------------------TGACTAGAGACACATTCAGCTT 	2525
-------------------------------------------------------------------TGACTAGAGACACATTCAGCT 	50742
-------------------------------------------------------------------TGACTAGAGACACATTCAGC 	1203
-------------------------------------------------------------------TGACTAGAGACACATTCAG 	141
-------------------------------------------------------------------TGACTAGAGACACATTCAGCTTG 	1
--------------------------------------------------------------------GACTAGAGACACATTCAGCTT 	4
--------------------------------------------------------------------GACTAGAGACACATTCAGCT 	62
--------------------------------------------------------------------GACTAGAGACACATTCAGC 	1
---------------------------------------------------------------------ACTAGAGACACATTCAGCT 	27
---------------------------------------------------------------------ACTAGAGACACATTCAGCTT 	3


Overlaps with: MNEST038279 MNEST038280
Overlaps with miRBase pre-miRNAs: cel-mir-44
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Caenorhabditis elegans GSM427346-5695 TGACTAGAGACACATTCAGCT CTGGATGTGCTCGTTAGTCATA down 1 3


Secondary structure

TGCTCATGCACCATGTGCCACGCTGGATGTGCTCGTTAGTCATAATATCCTCCACAAAGCAAGGACTATGACTAGAGACACATTCAGCTTGGCGCCGAATGCATTTTA
----------------------CTGGATGTGCTCGTTAGTCATA 	31
----------------------CTGGATGTGCTCGTTAGTCAT 	3
----------------------------------------------------------------ACTATGACTAGAGACACATTCAGC 	10
----------------------------------------------------------------ACTATGACTAGAGACACATTCAG 	4
----------------------------------------------------------------ACTATGACTAGAGACACATTCAGCT 	1
-----------------------------------------------------------------CTATGACTAGAGACACATTCAG 	1
------------------------------------------------------------------TATGACTAGAGACACATTCAGCT 	2
-------------------------------------------------------------------ATGACTAGAGACACATTCAGCT 	42
-------------------------------------------------------------------ATGACTAGAGACACATTCAG 	2
-------------------------------------------------------------------ATGACTAGAGACACATTCAGCTT 	1
--------------------------------------------------------------------TGACTAGAGACACATTCAGCTT 	2525
--------------------------------------------------------------------TGACTAGAGACACATTCAGCT 	50742
--------------------------------------------------------------------TGACTAGAGACACATTCAGC 	1203
--------------------------------------------------------------------TGACTAGAGACACATTCAG 	141
--------------------------------------------------------------------TGACTAGAGACACATTCAGCTTG 	1
---------------------------------------------------------------------GACTAGAGACACATTCAGCTT 	4
---------------------------------------------------------------------GACTAGAGACACATTCAGCT 	62
---------------------------------------------------------------------GACTAGAGACACATTCAGC 	1
----------------------------------------------------------------------ACTAGAGACACATTCAGCT 	27
----------------------------------------------------------------------ACTAGAGACACATTCAGCTT 	3


Overlaps with: MNEST038281 MNEST038282
Overlaps with miRBase pre-miRNAs: cel-mir-45
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Caenorhabditis elegans GSM427345-5693 TGACTAGAGACACATTCAGCT CTGGATGTGCTCGTTGGTCATA down 1 3


Secondary structure

CTGAAAAGAGAAAATGGCCAATCTGGATGTGCTCGTTGGTCATAGACGTCAACACGAACTGTTCATATGACTAGAGACACATTCAGCTTGGCCTGCTTCTCTAGTTT
---------------------TCTGGATGTGCTCGTTGGTCATA 	3
---------------------TCTGGATGTGCTCGTTGGTCAT 	1
----------------------CTGGATGTGCTCGTTGGTCATA 	497
----------------------CTGGATGTGCTCGTTGGTCAT 	16
----------------------CTGGATGTGCTCGTTGGTCA 	6
----------------------CTGGATGTGCTCGTTGGTC 	1
-----------------------TGGATGTGCTCGTTGGTCATA 	3
------------------------------------------------------------------ATGACTAGAGACACATTCAGCT 	8
-------------------------------------------------------------------TGACTAGAGACACATTCAGCTT 	533
-------------------------------------------------------------------TGACTAGAGACACATTCAGCT 	10806
-------------------------------------------------------------------TGACTAGAGACACATTCAGC 	225
-------------------------------------------------------------------TGACTAGAGACACATTCAG 	51
-------------------------------------------------------------------TGACTAGAGACACATTCAGCTTG 	2
--------------------------------------------------------------------GACTAGAGACACATTCAGCT 	6
--------------------------------------------------------------------GACTAGAGACACATTCAGCTT 	1
---------------------------------------------------------------------ACTAGAGACACATTCAGCT 	2
---------------------------------------------------------------------ACTAGAGACACATTCAGCTT 	1


Overlaps with: MNEST038279 MNEST038280
Overlaps with miRBase pre-miRNAs: cel-mir-44
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Caenorhabditis elegans GSM427345-5693 TGACTAGAGACACATTCAGCT CTGGATGTGCTCGTTAGTCATA down 1 3


Secondary structure

TGCTCATGCACCATGTGCCACGCTGGATGTGCTCGTTAGTCATAATATCCTCCACAAAGCAAGGACTATGACTAGAGACACATTCAGCTTGGCGCCGAATGCATTTTA
----------------------CTGGATGTGCTCGTTAGTCATA 	7
--------------------------------------------ATATCCTCCACAAAGCAAGGACTA 	1
----------------------------------------------------------------ACTATGACTAGAGACACATTCAGC 	2
----------------------------------------------------------------ACTATGACTAGAGACACATTCAGCT 	1
----------------------------------------------------------------ACTATGACTAGAGACACATTCAG 	1
-----------------------------------------------------------------CTATGACTAGAGACACATTCAG 	1
-------------------------------------------------------------------ATGACTAGAGACACATTCAGCT 	8
--------------------------------------------------------------------TGACTAGAGACACATTCAGCTT 	533
--------------------------------------------------------------------TGACTAGAGACACATTCAGCT 	10806
--------------------------------------------------------------------TGACTAGAGACACATTCAGC 	225
--------------------------------------------------------------------TGACTAGAGACACATTCAG 	51
--------------------------------------------------------------------TGACTAGAGACACATTCAGCTTG 	2
---------------------------------------------------------------------GACTAGAGACACATTCAGCT 	6
---------------------------------------------------------------------GACTAGAGACACATTCAGCTT 	1
----------------------------------------------------------------------ACTAGAGACACATTCAGCT 	2
----------------------------------------------------------------------ACTAGAGACACATTCAGCTT 	1


Overlaps with: MNEST038281 MNEST038282
Overlaps with miRBase pre-miRNAs: cel-mir-45
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Caenorhabditis elegans GSM427297-5679 TGACTAGAGACACATTCAGCT CTGGATGTGCTCGTTGGTCATA down 1 3


Secondary structure

CTGAAAAGAGAAAATGGCCAATCTGGATGTGCTCGTTGGTCATAGACGTCAACACGAACTGTTCATATGACTAGAGACACATTCAGCTTGGCCTGCTTCTCTAGTTT
----------------------CTGGATGTGCTCGTTGGTCATA 	73
----------------------CTGGATGTGCTCGTTGGTCAT 	8
----------------------CTGGATGTGCTCGTTGGTCA 	2
-----------------------------------------------------------------TATGACTAGAGACACATTCAGCT 	1
-------------------------------------------------------------------TGACTAGAGACACATTCAGCTT 	174
-------------------------------------------------------------------TGACTAGAGACACATTCAGCT 	2236
-------------------------------------------------------------------TGACTAGAGACACATTCAGC 	37
-------------------------------------------------------------------TGACTAGAGACACATTCAG 	3
--------------------------------------------------------------------GACTAGAGACACATTCAGCT 	3
---------------------------------------------------------------------ACTAGAGACACATTCAGCT 	1


Overlaps with: MNEST038279 MNEST038280
Overlaps with miRBase pre-miRNAs: cel-mir-44
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Caenorhabditis elegans GSM427297-5679 TGACTAGAGACACATTCAGCT CTGGATGTGCTCGTTAGTCATA down 1 3


Secondary structure

TGCTCATGCACCATGTGCCACGCTGGATGTGCTCGTTAGTCATAATATCCTCCACAAAGCAAGGACTATGACTAGAGACACATTCAGCTTGGCGCCGAATGCATTTTA
------------------------------------------------------------------TATGACTAGAGACACATTCAGCT 	1
--------------------------------------------------------------------TGACTAGAGACACATTCAGCTT 	174
--------------------------------------------------------------------TGACTAGAGACACATTCAGCT 	2236
--------------------------------------------------------------------TGACTAGAGACACATTCAGC 	37
--------------------------------------------------------------------TGACTAGAGACACATTCAG 	3
---------------------------------------------------------------------GACTAGAGACACATTCAGCT 	3
----------------------------------------------------------------------ACTAGAGACACATTCAGCT 	1


Overlaps with: MNEST038281 MNEST038282
Overlaps with miRBase pre-miRNAs: cel-mir-45
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Caenorhabditis elegans GSM297751-9445 TGACTAGAGACACATTCAGCT CTGGATGTGCTCGTTGGTCATA down 1 3


Secondary structure

CTGAAAAGAGAAAATGGCCAATCTGGATGTGCTCGTTGGTCATAGACGTCAACACGAACTGTTCATATGACTAGAGACACATTCAGCTTGGCCTGCTTCTCTAGTTT
----------------------CTGGATGTGCTCGTTGGTCATA 	5
------------------------------------------------------------------ATGACTAGAGACACATTCAGCT 	2
-------------------------------------------------------------------TGACTAGAGACACATTCAG 	76
-------------------------------------------------------------------TGACTAGAGACACATTCAGCT 	17116
-------------------------------------------------------------------TGACTAGAGACACATTCAGC 	2023
-------------------------------------------------------------------TGACTAGAGACACATTCAGCTT 	743
--------------------------------------------------------------------GACTAGAGACACATTCAGCTT 	1
--------------------------------------------------------------------GACTAGAGACACATTCAGCT 	10
---------------------------------------------------------------------ACTAGAGACACATTCAGCT 	11
----------------------------------------------------------------------CTAGAGACACATTCAGCTT 	4


Overlaps with: MNEST038279 MNEST038280
Overlaps with miRBase pre-miRNAs: cel-mir-44
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Caenorhabditis elegans GSM297751-9445 TGACTAGAGACACATTCAGCT CTGGATGTGCTCGTTAGTCATA down 1 3


Secondary structure

TGCTCATGCACCATGTGCCACGCTGGATGTGCTCGTTAGTCATAATATCCTCCACAAAGCAAGGACTATGACTAGAGACACATTCAGCTTGGCGCCGAATGCATTTTA
----------------------CTGGATGTGCTCGTTAGTCAT 	5
----------------------CTGGATGTGCTCGTTAGTCATA 	39
-----------------------TGGATGTGCTCGTTAGTCATA 	2
----------------------------------------------------------------ACTATGACTAGAGACACATTCAGC 	7
-------------------------------------------------------------------ATGACTAGAGACACATTCAGCT 	2
--------------------------------------------------------------------TGACTAGAGACACATTCAG 	76
--------------------------------------------------------------------TGACTAGAGACACATTCAGCT 	17116
--------------------------------------------------------------------TGACTAGAGACACATTCAGC 	2023
--------------------------------------------------------------------TGACTAGAGACACATTCAGCTT 	743
---------------------------------------------------------------------GACTAGAGACACATTCAGCTT 	1
---------------------------------------------------------------------GACTAGAGACACATTCAGCT 	10
----------------------------------------------------------------------ACTAGAGACACATTCAGCT 	11
-----------------------------------------------------------------------CTAGAGACACATTCAGCTT 	4


Overlaps with: MNEST038281 MNEST038282
Overlaps with miRBase pre-miRNAs: cel-mir-45
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Caenorhabditis elegans GSM297752-9446 TGACTAGAGACACATTCAGCT CTGGATGTGCTCGTTGGTCATA down 1 3


Secondary structure

CTGAAAAGAGAAAATGGCCAATCTGGATGTGCTCGTTGGTCATAGACGTCAACACGAACTGTTCATATGACTAGAGACACATTCAGCTTGGCCTGCTTCTCTAGTTT
---------------------TCTGGATGTGCTCGTTGGTCATA 	1
----------------------CTGGATGTGCTCGTTGGTCAT 	2
----------------------CTGGATGTGCTCGTTGGTCATA 	2
--------------------------------------------GACGTCAACACGAACTGTTCATA 	1
------------------------------------------------------------------ATGACTAGAGACACATTCAGCT 	4
------------------------------------------------------------------ATGACTAGAGACACATTCAGC 	1
-------------------------------------------------------------------TGACTAGAGACACATTCAG 	123
-------------------------------------------------------------------TGACTAGAGACACATTCAGCT 	19628
-------------------------------------------------------------------TGACTAGAGACACATTCAGCTT 	1093
-------------------------------------------------------------------TGACTAGAGACACATTCAGC 	1972
--------------------------------------------------------------------GACTAGAGACACATTCAGCTT 	1
--------------------------------------------------------------------GACTAGAGACACATTCAGCT 	17
--------------------------------------------------------------------GACTAGAGACACATTCAGC 	1
---------------------------------------------------------------------ACTAGAGACACATTCAGCT 	2
----------------------------------------------------------------------CTAGAGACACATTCAGCTT 	1


Overlaps with: MNEST038279 MNEST038280
Overlaps with miRBase pre-miRNAs: cel-mir-44
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Caenorhabditis elegans GSM297752-9446 TGACTAGAGACACATTCAGCT CTGGATGTGCTCGTTAGTCATA down 1 3


Secondary structure

TGCTCATGCACCATGTGCCACGCTGGATGTGCTCGTTAGTCATAATATCCTCCACAAAGCAAGGACTATGACTAGAGACACATTCAGCTTGGCGCCGAATGCATTTTA
----------------------CTGGATGTGCTCGTTAGTCATA 	38
----------------------CTGGATGTGCTCGTTAGTCAT 	3
----------------------------------------------------------------ACTATGACTAGAGACACATTCAGC 	12
----------------------------------------------------------------ACTATGACTAGAGACACATTCAG 	1
----------------------------------------------------------------ACTATGACTAGAGACACATTC 	1
-------------------------------------------------------------------ATGACTAGAGACACATTCAGCT 	4
-------------------------------------------------------------------ATGACTAGAGACACATTCAGC 	1
--------------------------------------------------------------------TGACTAGAGACACATTCAG 	123
--------------------------------------------------------------------TGACTAGAGACACATTCAGCT 	19628
--------------------------------------------------------------------TGACTAGAGACACATTCAGCTT 	1093
--------------------------------------------------------------------TGACTAGAGACACATTCAGC 	1972
---------------------------------------------------------------------GACTAGAGACACATTCAGCTT 	1
---------------------------------------------------------------------GACTAGAGACACATTCAGCT 	17
---------------------------------------------------------------------GACTAGAGACACATTCAGC 	1
----------------------------------------------------------------------ACTAGAGACACATTCAGCT 	2
-----------------------------------------------------------------------CTAGAGACACATTCAGCTT 	1


Overlaps with: MNEST038281 MNEST038282
Overlaps with miRBase pre-miRNAs: cel-mir-45
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Caenorhabditis elegans GSM427301-5681 TGACTAGAGACACATTCAGCT CTGGATGTGCTCGTTGGTCATA down 1 3


Secondary structure

CTGAAAAGAGAAAATGGCCAATCTGGATGTGCTCGTTGGTCATAGACGTCAACACGAACTGTTCATATGACTAGAGACACATTCAGCTTGGCCTGCTTCTCTAGTTT
---------------------TCTGGATGTGCTCGTTGGTCATA 	1
----------------------CTGGATGTGCTCGTTGGTCATA 	33
----------------------CTGGATGTGCTCGTTGGTCAT 	5
----------------------CTGGATGTGCTCGTTGGTCA 	2
----------------------CTGGATGTGCTCGTTGGTC 	1
-------------------------------------------------------------------TGACTAGAGACACATTCAGCTT 	197
-------------------------------------------------------------------TGACTAGAGACACATTCAGCT 	1830
-------------------------------------------------------------------TGACTAGAGACACATTCAGC 	21
-------------------------------------------------------------------TGACTAGAGACACATTCAG 	5
--------------------------------------------------------------------GACTAGAGACACATTCAGCT 	5


Overlaps with: MNEST038279 MNEST038280
Overlaps with miRBase pre-miRNAs: cel-mir-44
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
18 Caenorhabditis elegans GSM427301-5681 TGACTAGAGACACATTCAGCT CTGGATGTGCTCGTTAGTCATA down 1 3


Secondary structure

TGCTCATGCACCATGTGCCACGCTGGATGTGCTCGTTAGTCATAATATCCTCCACAAAGCAAGGACTATGACTAGAGACACATTCAGCTTGGCGCCGAATGCATTTTA
--------------------------------------------------------------------TGACTAGAGACACATTCAGCTT 	197
--------------------------------------------------------------------TGACTAGAGACACATTCAGCT 	1830
--------------------------------------------------------------------TGACTAGAGACACATTCAGC 	21
--------------------------------------------------------------------TGACTAGAGACACATTCAG 	5
---------------------------------------------------------------------GACTAGAGACACATTCAGCT 	5


Overlaps with: MNEST038281 MNEST038282
Overlaps with miRBase pre-miRNAs: cel-mir-45
HuntMi prediction: true miRNA