miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGACTAGATCTACACTCATTGA

selected species: Bombyx mori



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Bombyx mori GSM449725_whole_body_clean TGACTAGATCTACACTCATTGA AATGGGTATAGGTCTAGTATCACC down 1 2


Secondary structure

GGATCTTTCTCCATTTGTAGTTAATGGGTATAGGTCTAGTATCACCGGGCTGATTCTGTGACTAGATCTACACTCATTGAGTGCTTATGGATTCATCTT
----------------------AATGGGTATAGGTCTAGTATCA 	3
----------------------AATGGGTATAGGTCTAGTATCAC 	1
----------------------AATGGGTATAGGTCTAGTAT 	1
----------------------------------------------------------TGACTAGATCTACACTCATTGA 	864
----------------------------------------------------------TGACTAGATCTACACTCATTG 	187
----------------------------------------------------------TGACTAGATCTACACTCATT 	16
----------------------------------------------------------TGACTAGATCTACACTCAT 	4


Overlaps with: MNEST035553
Overlaps with miRBase pre-miRNAs: bmo-mir-279b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Bombyx mori GSM449726_Anterior_silkgland_clean TGACTAGATCTACACTCATTGA AATGGGTATAGGTCTAGTATCACC down 1 2


Secondary structure

GGATCTTTCTCCATTTGTAGTTAATGGGTATAGGTCTAGTATCACCGGGCTGATTCTGTGACTAGATCTACACTCATTGAGTGCTTATGGATTCATCTT
----------------------AATGGGTATAGGTCTAGTATCA 	76
----------------------AATGGGTATAGGTCTAGTATCACC 	22
----------------------AATGGGTATAGGTCTAGTATCAC 	35
----------------------AATGGGTATAGGTCTAGTAT 	5
----------------------AATGGGTATAGGTCTAGTA 	1
----------------------AATGGGTATAGGTCTAGTATC 	1
----------------------AATGGGTATAGGTCTAGTATCACCG 	1
-----------------------ATGGGTATAGGTCTAGTATCACC 	16
-----------------------ATGGGTATAGGTCTAGTATCAC 	12
-----------------------ATGGGTATAGGTCTAGTATCA 	5
-----------------------ATGGGTATAGGTCTAGTATCACCG 	4
------------------------TGGGTATAGGTCTAGTATCACC 	7
------------------------TGGGTATAGGTCTAGTATCAC 	2
--------------------------------------------------------TGTGACTAGATCTACACTCATT 	5
---------------------------------------------------------GTGACTAGATCTACACTCATTG 	2
----------------------------------------------------------TGACTAGATCTACACTCATTGA 	19689
----------------------------------------------------------TGACTAGATCTACACTCATTG 	3090
----------------------------------------------------------TGACTAGATCTACACTCATT 	190
----------------------------------------------------------TGACTAGATCTACACTCAT 	27
----------------------------------------------------------TGACTAGATCTACACTCATTGAG 	1
-----------------------------------------------------------GACTAGATCTACACTCATTGA 	109
-----------------------------------------------------------GACTAGATCTACACTCATTG 	2
-----------------------------------------------------------GACTAGATCTACACTCATT 	1
------------------------------------------------------------ACTAGATCTACACTCATTGA 	20


Overlaps with: MNEST035553
Overlaps with miRBase pre-miRNAs: bmo-mir-279b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Bombyx mori GSM449727_Posterior_silkgland_clean TGACTAGATCTACACTCATTGA AATGGGTATAGGTCTAGTATCACC down 1 2


Secondary structure

GGATCTTTCTCCATTTGTAGTTAATGGGTATAGGTCTAGTATCACCGGGCTGATTCTGTGACTAGATCTACACTCATTGAGTGCTTATGGATTCATCTT
----------------------AATGGGTATAGGTCTAGTATCA 	2
----------------------AATGGGTATAGGTCTAGTATC 	1
----------------------AATGGGTATAGGTCTAGTATCACC 	1
-----------------------ATGGGTATAGGTCTAGTAT 	2
--------------------------------------------------------TGTGACTAGATCTACACTCATT 	1
----------------------------------------------------------TGACTAGATCTACACTCATTGA 	1451
----------------------------------------------------------TGACTAGATCTACACTCATTG 	380
----------------------------------------------------------TGACTAGATCTACACTCATT 	22
----------------------------------------------------------TGACTAGATCTACACTCAT 	6
-----------------------------------------------------------GACTAGATCTACACTCATTGA 	15
-----------------------------------------------------------GACTAGATCTACACTCATTG 	3
------------------------------------------------------------ACTAGATCTACACTCATTGA 	2
------------------------------------------------------------ACTAGATCTACACTCATTG 	1


Overlaps with: MNEST035553
Overlaps with miRBase pre-miRNAs: bmo-mir-279b
HuntMi prediction: true miRNA