miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGACTAGATTTCATGCTCGTCT

selected species: Drosophila melanogaster



11 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Drosophila melanogaster GSM466487_wt_total TGACTAGATTTCATGCTCGTCT GCGAACATGGATCTAGTGCACG down 2 2


Secondary structure

CTTTTCTGACTCTATTTTGTCGGCGAACATGGATCTAGTGCACGGTGGTTCATGATTAAGTTCGTGACTAGATTTCATGCTCGTCTATTAAGTTGGGTCAGCACA
---------------------GGCGAACATGGATCTAGTGCACG 	41
---------------------GGCGAACATGGATCTAGTGC 	2
---------------------GGCGAACATGGATCTAGTGCA 	6
---------------------GGCGAACATGGATCTAGTGCAC 	8
----------------------GCGAACATGGATCTAGTGCACGG 	2
----------------------GCGAACATGGATCTAGTGCA 	6
----------------------GCGAACATGGATCTAGTGCAC 	16
----------------------GCGAACATGGATCTAGTGCACG 	180
-----------------------CGAACATGGATCTAGTGCACG 	1
-----------------------CGAACATGGATCTAGTGCACGG 	4
------------------------GAACATGGATCTAGTGCACG 	2
--------------------------------------------GTGGTTCATGATTAAGTTCGT 	2
--------------------------------------------GTGGTTCATGATTAAGTTCG 	12
--------------------------------------------GTGGTTCATGATTAAGTTC 	1
---------------------------------------------------------------GTGACTAGATTTCATGCTCGTCT 	24
---------------------------------------------------------------GTGACTAGATTTCATGCTCGT 	4
---------------------------------------------------------------GTGACTAGATTTCATGCTCG 	1
---------------------------------------------------------------GTGACTAGATTTCATGCTCGTC 	10
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCTA 	1341
----------------------------------------------------------------TGACTAGATTTCATGCTCGT 	198
----------------------------------------------------------------TGACTAGATTTCATGCTCGTC 	487
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCTATT 	2
----------------------------------------------------------------TGACTAGATTTCATGCTCG 	20
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCT 	3402
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCTAT 	21
-----------------------------------------------------------------GACTAGATTTCATGCTCGTCT 	33
-----------------------------------------------------------------GACTAGATTTCATGCTCGTC 	9
-----------------------------------------------------------------GACTAGATTTCATGCTCGTCTAT 	1
-----------------------------------------------------------------GACTAGATTTCATGCTCGTCTA 	13
------------------------------------------------------------------ACTAGATTTCATGCTCGTCTA 	1
------------------------------------------------------------------ACTAGATTTCATGCTCGTCT 	5
------------------------------------------------------------------ACTAGATTTCATGCTCGTC 	2
-------------------------------------------------------------------CTAGATTTCATGCTCGTCT 	1
--------------------------------------------------------------------TAGATTTCATGCTCGTCTA 	1


Overlaps with: MNEST036569 MNEST036570
Overlaps with miRBase pre-miRNAs: dme-mir-996
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Drosophila melanogaster GSM385822-16273 TGACTAGATTTCATGCTCGTCT GCGAACATGGATCTAGTGCACG down 2 2


Secondary structure

CTTTTCTGACTCTATTTTGTCGGCGAACATGGATCTAGTGCACGGTGGTTCATGATTAAGTTCGTGACTAGATTTCATGCTCGTCTATTAAGTTGGGTCAGCACA
-------------------TCGGCGAACATGGATCTAGTGCA 	1
--------------------CGGCGAACATGGATCTAGTGCAC 	3
--------------------CGGCGAACATGGATCTAGTGCA 	3
---------------------GGCGAACATGGATCTAGTGCACGG 	1
---------------------GGCGAACATGGATCTAGTGCACG 	116
---------------------GGCGAACATGGATCTAGTGCACGGT 	1
---------------------GGCGAACATGGATCTAGTGC 	45
---------------------GGCGAACATGGATCTAGTGCA 	211
---------------------GGCGAACATGGATCTAGTG 	3
---------------------GGCGAACATGGATCTAGTGCAC 	175
----------------------GCGAACATGGATCTAGTGCACGG 	14
----------------------GCGAACATGGATCTAGTGCA 	31
----------------------GCGAACATGGATCTAGTGCAC 	112
----------------------GCGAACATGGATCTAGTGCACGGT 	3
----------------------GCGAACATGGATCTAGTGCACG 	72
----------------------GCGAACATGGATCTAGTGC 	10
-----------------------CGAACATGGATCTAGTGCACGG 	13
------------------------GAACATGGATCTAGTGCACGG 	1
------------------------GAACATGGATCTAGTGCAC 	1
--------------------------------------------GTGGTTCATGATTAAGTTCGT 	1
--------------------------------------------GTGGTTCATGATTAAGTTCG 	7
--------------------------------------------GTGGTTCATGATTAAGTTC 	1
------------------------------------------------------------TTCGTGACTAGATTTCATGCTCGTC 	2
---------------------------------------------------------------GTGACTAGATTTCATGCTCGTCT 	134
---------------------------------------------------------------GTGACTAGATTTCATGCTCGTCTA 	2
---------------------------------------------------------------GTGACTAGATTTCATGCTCGT 	4
---------------------------------------------------------------GTGACTAGATTTCATGCTCG 	1
---------------------------------------------------------------GTGACTAGATTTCATGCTC 	1
---------------------------------------------------------------GTGACTAGATTTCATGCTCGTC 	59
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCTA 	8074
----------------------------------------------------------------TGACTAGATTTCATGCTCGTC 	18397
----------------------------------------------------------------TGACTAGATTTCATGCTCGT 	659
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCTATT 	11
----------------------------------------------------------------TGACTAGATTTCATGCTCG 	128
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCT 	56747
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCTAT 	1490
-----------------------------------------------------------------GACTAGATTTCATGCTCGTCT 	55
-----------------------------------------------------------------GACTAGATTTCATGCTCGTC 	21
-----------------------------------------------------------------GACTAGATTTCATGCTCGTCTAT 	2
-----------------------------------------------------------------GACTAGATTTCATGCTCGTCTA 	12
------------------------------------------------------------------ACTAGATTTCATGCTCGTCT 	8
------------------------------------------------------------------ACTAGATTTCATGCTCGTCTAT 	1
------------------------------------------------------------------ACTAGATTTCATGCTCGTC 	2
-------------------------------------------------------------------CTAGATTTCATGCTCGTCT 	7
-------------------------------------------------------------------CTAGATTTCATGCTCGTCTA 	1
--------------------------------------------------------------------TAGATTTCATGCTCGTCTAT 	1
--------------------------------------------------------------------TAGATTTCATGCTCGTCTA 	1
---------------------------------------------------------------------AGATTTCATGCTCGTCTAT 	1


Overlaps with: MNEST036569 MNEST036570
Overlaps with miRBase pre-miRNAs: dme-mir-996
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Drosophila melanogaster GSM466494_r2d2_heterozygotes_untreated TGACTAGATTTCATGCTCGTCT GCGAACATGGATCTAGTGCACG down 2 2


Secondary structure

CTTTTCTGACTCTATTTTGTCGGCGAACATGGATCTAGTGCACGGTGGTTCATGATTAAGTTCGTGACTAGATTTCATGCTCGTCTATTAAGTTGGGTCAGCACA
---------------------GGCGAACATGGATCTAGTGCACGG 	1
---------------------GGCGAACATGGATCTAGTGCACG 	61
---------------------GGCGAACATGGATCTAGTGC 	6
---------------------GGCGAACATGGATCTAGTGCA 	11
---------------------GGCGAACATGGATCTAGTGCAC 	8
----------------------GCGAACATGGATCTAGTGCACGG 	5
----------------------GCGAACATGGATCTAGTGCA 	9
----------------------GCGAACATGGATCTAGTGCAC 	19
----------------------GCGAACATGGATCTAGTGCACGGT 	1
----------------------GCGAACATGGATCTAGTGCACG 	317
----------------------GCGAACATGGATCTAGTGC 	1
-----------------------CGAACATGGATCTAGTGCACG 	2
-----------------------CGAACATGGATCTAGTGCACGG 	4
------------------------GAACATGGATCTAGTGCACG 	1
--------------------------------------------GTGGTTCATGATTAAGTTCG 	10
---------------------------------------------------------------GTGACTAGATTTCATGCTCGTCT 	35
---------------------------------------------------------------GTGACTAGATTTCATGCTCGT 	1
---------------------------------------------------------------GTGACTAGATTTCATGCTCGTC 	5
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCTA 	1251
----------------------------------------------------------------TGACTAGATTTCATGCTCGT 	316
----------------------------------------------------------------TGACTAGATTTCATGCTCGTC 	19
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCTATT 	1
----------------------------------------------------------------TGACTAGATTTCATGCTCG 	32
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCT 	5561
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCTAT 	15
-----------------------------------------------------------------GACTAGATTTCATGCTCGTCT 	67
-----------------------------------------------------------------GACTAGATTTCATGCTCGTCTA 	23
-----------------------------------------------------------------GACTAGATTTCATGCTCGT 	4
------------------------------------------------------------------ACTAGATTTCATGCTCGTCT 	3
-------------------------------------------------------------------CTAGATTTCATGCTCGTCTAT 	1


Overlaps with: MNEST036569 MNEST036570
Overlaps with miRBase pre-miRNAs: dme-mir-996
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Drosophila melanogaster GSM466496_r2d2_homozygotes_untreated TGACTAGATTTCATGCTCGTCT GCGAACATGGATCTAGTGCACG down 2 2


Secondary structure

CTTTTCTGACTCTATTTTGTCGGCGAACATGGATCTAGTGCACGGTGGTTCATGATTAAGTTCGTGACTAGATTTCATGCTCGTCTATTAAGTTGGGTCAGCACA
---------------------GGCGAACATGGATCTAGTGCACG 	56
---------------------GGCGAACATGGATCTAGTGCA 	42
---------------------GGCGAACATGGATCTAGTGCAC 	13
----------------------GCGAACATGGATCTAGTGCA 	8
----------------------GCGAACATGGATCTAGTGCAC 	31
----------------------GCGAACATGGATCTAGTGCACG 	53
----------------------GCGAACATGGATCTAGTGC 	1
-----------------------CGAACATGGATCTAGTGCACG 	2
-----------------------CGAACATGGATCTAGTGCACGG 	3
-----------------------CGAACATGGATCTAGTGCAC 	1
--------------------------------------------GTGGTTCATGATTAAGTTCGT 	2
--------------------------------------------GTGGTTCATGATTAAGTTCG 	8
---------------------------------------------------------------GTGACTAGATTTCATGCTCGTCT 	53
---------------------------------------------------------------GTGACTAGATTTCATGCTCG 	3
---------------------------------------------------------------GTGACTAGATTTCATGCTCGTC 	12
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCTA 	1499
----------------------------------------------------------------TGACTAGATTTCATGCTCGT 	269
----------------------------------------------------------------TGACTAGATTTCATGCTCGTC 	859
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCTATT 	3
----------------------------------------------------------------TGACTAGATTTCATGCTCG 	19
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCT 	7584
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCTAT 	20
-----------------------------------------------------------------GACTAGATTTCATGCTCGTCT 	117
-----------------------------------------------------------------GACTAGATTTCATGCTCGTC 	19
-----------------------------------------------------------------GACTAGATTTCATGCTCGTCTAT 	2
-----------------------------------------------------------------GACTAGATTTCATGCTCGTCTA 	40
-----------------------------------------------------------------GACTAGATTTCATGCTCGT 	14
------------------------------------------------------------------ACTAGATTTCATGCTCGTCT 	4
------------------------------------------------------------------ACTAGATTTCATGCTCGTC 	1


Overlaps with: MNEST036569 MNEST036570
Overlaps with miRBase pre-miRNAs: dme-mir-996
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Drosophila melanogaster GSM286605-9793 TGACTAGATTTCATGCTCGTCT GCGAACATGGATCTAGTGCACG down 2 2


Secondary structure

CTTTTCTGACTCTATTTTGTCGGCGAACATGGATCTAGTGCACGGTGGTTCATGATTAAGTTCGTGACTAGATTTCATGCTCGTCTATTAAGTTGGGTCAGCACA
--------------------CGGCGAACATGGATCTAGTGCACG 	1
---------------------GGCGAACATGGATCTAGTGCACGGT 	3
---------------------GGCGAACATGGATCTAGTGCA 	39
---------------------GGCGAACATGGATCTAGTGCACGG 	2
---------------------GGCGAACATGGATCTAGTGCACG 	356
---------------------GGCGAACATGGATCTAGTGCAC 	42
----------------------GCGAACATGGATCTAGTGC 	1
----------------------GCGAACATGGATCTAGTGCACGG 	7
----------------------GCGAACATGGATCTAGTGCA 	7
----------------------GCGAACATGGATCTAGTGCAC 	21
----------------------GCGAACATGGATCTAGTGCACGGT 	1
----------------------GCGAACATGGATCTAGTGCACG 	329
-----------------------CGAACATGGATCTAGTGCACG 	24
-----------------------CGAACATGGATCTAGTGCACGG 	5
------------------------GAACATGGATCTAGTGCACG 	4
--------------------------------------------GTGGTTCATGATTAAGTTCG 	11
--------------------------------------------GTGGTTCATGATTAAGTTC 	1
---------------------------------------------------------------GTGACTAGATTTCATGCTCGTCT 	9
---------------------------------------------------------------GTGACTAGATTTCATGCTCGTC 	19
---------------------------------------------------------------GTGACTAGATTTCATGCTCGT 	1
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCTA 	6020
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCTAT 	206
----------------------------------------------------------------TGACTAGATTTCATGCTCGTC 	1223
----------------------------------------------------------------TGACTAGATTTCATGCTCGT 	118
----------------------------------------------------------------TGACTAGATTTCATGCTCG 	29
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCT 	7325
-----------------------------------------------------------------GACTAGATTTCATGCTCGTCT 	5
-----------------------------------------------------------------GACTAGATTTCATGCTCGTC 	3
-----------------------------------------------------------------GACTAGATTTCATGCTCGTCTAT 	3
-----------------------------------------------------------------GACTAGATTTCATGCTCGTCTA 	9
-------------------------------------------------------------------CTAGATTTCATGCTCGTCT 	5


Overlaps with: MNEST036569 MNEST036570
Overlaps with miRBase pre-miRNAs: dme-mir-996
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Drosophila melanogaster GSM343833-15151 TGACTAGATTTCATGCTCGTCT GCGAACATGGATCTAGTGCACG down 2 2


Secondary structure

CTTTTCTGACTCTATTTTGTCGGCGAACATGGATCTAGTGCACGGTGGTTCATGATTAAGTTCGTGACTAGATTTCATGCTCGTCTATTAAGTTGGGTCAGCACA
--------------------CGGCGAACATGGATCTAGTGCACGG 	1
--------------------CGGCGAACATGGATCTAGTGC 	1
--------------------CGGCGAACATGGATCTAGTGCACG 	5
--------------------CGGCGAACATGGATCTAGTGCA 	4
---------------------GGCGAACATGGATCTAGTGCACGGT 	2
---------------------GGCGAACATGGATCTAGTGC 	83
---------------------GGCGAACATGGATCTAGTGCA 	267
---------------------GGCGAACATGGATCTAGTGCACGG 	3
---------------------GGCGAACATGGATCTAGTGCACG 	2025
---------------------GGCGAACATGGATCTAGTG 	10
---------------------GGCGAACATGGATCTAGTGCAC 	85
----------------------GCGAACATGGATCTAGTGC 	20
----------------------GCGAACATGGATCTAGTGCACGG 	18
----------------------GCGAACATGGATCTAGTGCA 	43
----------------------GCGAACATGGATCTAGTGCAC 	31
----------------------GCGAACATGGATCTAGTGCACGGTGG 	1
----------------------GCGAACATGGATCTAGTGCACGGT 	3
----------------------GCGAACATGGATCTAGTGCACG 	1178
-----------------------CGAACATGGATCTAGTGCACG 	35
-----------------------CGAACATGGATCTAGTGCACGG 	23
-----------------------CGAACATGGATCTAGTGCA 	1
-----------------------CGAACATGGATCTAGTGCACGGT 	2
------------------------GAACATGGATCTAGTGCACG 	2
--------------------------------------------GTGGTTCATGATTAAGTTCG 	49
---------------------------------------------------------------GTGACTAGATTTCATGCTCGTCT 	27
---------------------------------------------------------------GTGACTAGATTTCATGCTCG 	4
---------------------------------------------------------------GTGACTAGATTTCATGCTCGTC 	46
---------------------------------------------------------------GTGACTAGATTTCATGCTCGT 	8
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCTA 	3088
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCTAT 	21
----------------------------------------------------------------TGACTAGATTTCATGCTCGT 	4302
----------------------------------------------------------------TGACTAGATTTCATGCTCGTC 	6950
----------------------------------------------------------------TGACTAGATTTCATGCTCG 	101
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCT 	17760
-----------------------------------------------------------------GACTAGATTTCATGCTCGTCT 	17
-----------------------------------------------------------------GACTAGATTTCATGCTCGTC 	10
-----------------------------------------------------------------GACTAGATTTCATGCTCGTCTA 	8
-----------------------------------------------------------------GACTAGATTTCATGCTCGT 	2
------------------------------------------------------------------ACTAGATTTCATGCTCGTCTA 	6
------------------------------------------------------------------ACTAGATTTCATGCTCGTCT 	7
------------------------------------------------------------------ACTAGATTTCATGCTCGTC 	1
-------------------------------------------------------------------CTAGATTTCATGCTCGTCT 	3


Overlaps with: MNEST036569 MNEST036570
Overlaps with miRBase pre-miRNAs: dme-mir-996
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Drosophila melanogaster GSM322543-14323 TGACTAGATTTCATGCTCGTCT GCGAACATGGATCTAGTGCACG down 2 2


Secondary structure

CTTTTCTGACTCTATTTTGTCGGCGAACATGGATCTAGTGCACGGTGGTTCATGATTAAGTTCGTGACTAGATTTCATGCTCGTCTATTAAGTTGGGTCAGCACA
--------------------CGGCGAACATGGATCTAGTGCACG 	6
---------------------GGCGAACATGGATCTAGTGCA 	33
---------------------GGCGAACATGGATCTAGTGCACG 	239
---------------------GGCGAACATGGATCTAGTGCAC 	15
---------------------GGCGAACATGGATCTAGTGCACGG 	15
---------------------GGCGAACATGGATCTAGTGC 	9
----------------------GCGAACATGGATCTAGTGCA 	14
----------------------GCGAACATGGATCTAGTGCACGGTG 	1
----------------------GCGAACATGGATCTAGTGCAC 	76
----------------------GCGAACATGGATCTAGTGCACGG 	28
----------------------GCGAACATGGATCTAGTGCACG 	428
-----------------------CGAACATGGATCTAGTGCACGG 	26
-----------------------CGAACATGGATCTAGTGCACG 	13
-----------------------CGAACATGGATCTAGTGCAC 	2
--------------------------------------------GTGGTTCATGATTAAGTTCG 	3
---------------------------------------------------------------GTGACTAGATTTCATGCTCGTCT 	29
---------------------------------------------------------------GTGACTAGATTTCATGCTCGTC 	17
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCTA 	3538
----------------------------------------------------------------TGACTAGATTTCATGCTCGT 	495
----------------------------------------------------------------TGACTAGATTTCATGCTCGTC 	2066
----------------------------------------------------------------TGACTAGATTTCATGCTCG 	98
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCT 	7633
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCTAT 	104
-----------------------------------------------------------------GACTAGATTTCATGCTCGTCT 	3
-----------------------------------------------------------------GACTAGATTTCATGCTCGTCTA 	5


Overlaps with: MNEST036569 MNEST036570
Overlaps with miRBase pre-miRNAs: dme-mir-996
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Drosophila melanogaster GSM399101-5265 TGACTAGATTTCATGCTCGTCT GCGAACATGGATCTAGTGCACG down 2 2


Secondary structure

CTTTTCTGACTCTATTTTGTCGGCGAACATGGATCTAGTGCACGGTGGTTCATGATTAAGTTCGTGACTAGATTTCATGCTCGTCTATTAAGTTGGGTCAGCACA
--------------------CGGCGAACATGGATCTAGTGCACG 	1
---------------------GGCGAACATGGATCTAGTGCACGGT 	1
---------------------GGCGAACATGGATCTAGTGC 	11
---------------------GGCGAACATGGATCTAGTGCA 	25
---------------------GGCGAACATGGATCTAGTGCACG 	260
---------------------GGCGAACATGGATCTAGTG 	4
---------------------GGCGAACATGGATCTAGTGCAC 	8
----------------------GCGAACATGGATCTAGTGC 	6
----------------------GCGAACATGGATCTAGTGCACGG 	5
----------------------GCGAACATGGATCTAGTGCA 	8
----------------------GCGAACATGGATCTAGTGCAC 	3
----------------------GCGAACATGGATCTAGTGCACGGT 	5
----------------------GCGAACATGGATCTAGTGCACG 	276
-----------------------CGAACATGGATCTAGTGCACG 	4
-----------------------CGAACATGGATCTAGTGCACGG 	5
-----------------------CGAACATGGATCTAGTGCACGGT 	1
------------------------GAACATGGATCTAGTGCAC 	1
--------------------------------------------GTGGTTCATGATTAAGTTCG 	24
--------------------------------------------GTGGTTCATGATTAAGTTCGT 	1
---------------------------------------------------------------GTGACTAGATTTCATGCTCGTCT 	14
---------------------------------------------------------------GTGACTAGATTTCATGCTCG 	1
---------------------------------------------------------------GTGACTAGATTTCATGCTCGTC 	27
---------------------------------------------------------------GTGACTAGATTTCATGCTCGT 	10
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCTA 	1374
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCTAT 	6
----------------------------------------------------------------TGACTAGATTTCATGCTCGT 	1634
----------------------------------------------------------------TGACTAGATTTCATGCTCGTC 	2003
----------------------------------------------------------------TGACTAGATTTCATGCTCG 	31
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCT 	7570
-----------------------------------------------------------------GACTAGATTTCATGCTCGTCT 	4
-----------------------------------------------------------------GACTAGATTTCATGCTCGTC 	1
-----------------------------------------------------------------GACTAGATTTCATGCTCGTCTA 	3
------------------------------------------------------------------ACTAGATTTCATGCTCGTCT 	2
------------------------------------------------------------------ACTAGATTTCATGCTCGTC 	1


Overlaps with: MNEST036569 MNEST036570
Overlaps with miRBase pre-miRNAs: dme-mir-996
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Drosophila melanogaster GSM385744-16261 TGACTAGATTTCATGCTCGTCT GCGAACATGGATCTAGTGCACG down 2 2


Secondary structure

CTTTTCTGACTCTATTTTGTCGGCGAACATGGATCTAGTGCACGGTGGTTCATGATTAAGTTCGTGACTAGATTTCATGCTCGTCTATTAAGTTGGGTCAGCACA
--------------------CGGCGAACATGGATCTAGTGCAC 	2
--------------------CGGCGAACATGGATCTAGTGCA 	4
---------------------GGCGAACATGGATCTAGTGCACGG 	1
---------------------GGCGAACATGGATCTAGTGCACG 	105
---------------------GGCGAACATGGATCTAGTGC 	33
---------------------GGCGAACATGGATCTAGTGCA 	197
---------------------GGCGAACATGGATCTAGTGCAC 	148
---------------------GGCGAACATGGATCTAGTG 	4
----------------------GCGAACATGGATCTAGTGCACGG 	16
----------------------GCGAACATGGATCTAGTGCA 	24
----------------------GCGAACATGGATCTAGTGCAC 	107
----------------------GCGAACATGGATCTAGTGCACGGT 	3
----------------------GCGAACATGGATCTAGTGCACG 	67
----------------------GCGAACATGGATCTAGTGC 	7
-----------------------CGAACATGGATCTAGTGCACGG 	11
-----------------------CGAACATGGATCTAGTGCACGGT 	1
-----------------------CGAACATGGATCTAGTGCAC 	1
------------------------GAACATGGATCTAGTGCACGG 	2
--------------------------------------------GTGGTTCATGATTAAGTTCG 	5
--------------------------------------------GTGGTTCATGATTAAGTTC 	3
-------------------------------------------------------------TCGTGACTAGATTTCATGC 	1
---------------------------------------------------------------GTGACTAGATTTCATGCTCGTCT 	103
---------------------------------------------------------------GTGACTAGATTTCATGCTCGTCTA 	3
---------------------------------------------------------------GTGACTAGATTTCATGCTCGT 	6
---------------------------------------------------------------GTGACTAGATTTCATGCTCG 	1
---------------------------------------------------------------GTGACTAGATTTCATGCTCGTC 	70
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCTA 	12458
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCTATTA 	1
----------------------------------------------------------------TGACTAGATTTCATGCTCGT 	1002
----------------------------------------------------------------TGACTAGATTTCATGCTCGTC 	30886
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCTATT 	17
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCT 	84456
----------------------------------------------------------------TGACTAGATTTCATGCTCG 	266
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCTAT 	2166
-----------------------------------------------------------------GACTAGATTTCATGCTCGTCT 	51
-----------------------------------------------------------------GACTAGATTTCATGCTCGTC 	18
-----------------------------------------------------------------GACTAGATTTCATGCTCGTCTAT 	6
-----------------------------------------------------------------GACTAGATTTCATGCTCGTCTA 	9
-----------------------------------------------------------------GACTAGATTTCATGCTCGT 	2
------------------------------------------------------------------ACTAGATTTCATGCTCGTCTA 	1
------------------------------------------------------------------ACTAGATTTCATGCTCGTCT 	11
------------------------------------------------------------------ACTAGATTTCATGCTCGTC 	5
-------------------------------------------------------------------CTAGATTTCATGCTCGTCT 	10
-------------------------------------------------------------------CTAGATTTCATGCTCGTCTAT 	1
-------------------------------------------------------------------CTAGATTTCATGCTCGTCTA 	2
--------------------------------------------------------------------TAGATTTCATGCTCGTCTA 	1


Overlaps with: MNEST036569 MNEST036570
Overlaps with miRBase pre-miRNAs: dme-mir-996
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Drosophila melanogaster GSM385748-16264 TGACTAGATTTCATGCTCGTCT GCGAACATGGATCTAGTGCACG down 2 2


Secondary structure

CTTTTCTGACTCTATTTTGTCGGCGAACATGGATCTAGTGCACGGTGGTTCATGATTAAGTTCGTGACTAGATTTCATGCTCGTCTATTAAGTTGGGTCAGCACA
--------------------CGGCGAACATGGATCTAGTGC 	4
--------------------CGGCGAACATGGATCTAGTGCAC 	2
--------------------CGGCGAACATGGATCTAGTGCA 	8
---------------------GGCGAACATGGATCTAGTGC 	84
---------------------GGCGAACATGGATCTAGTG 	10
---------------------GGCGAACATGGATCTAGTGCAC 	326
---------------------GGCGAACATGGATCTAGTGCACGG 	1
---------------------GGCGAACATGGATCTAGTGCACG 	227
---------------------GGCGAACATGGATCTAGTGCA 	410
----------------------GCGAACATGGATCTAGTGCAC 	217
----------------------GCGAACATGGATCTAGTGCACGGT 	7
----------------------GCGAACATGGATCTAGTGCACG 	146
----------------------GCGAACATGGATCTAGTGC 	24
----------------------GCGAACATGGATCTAGTGCACGG 	31
----------------------GCGAACATGGATCTAGTGCA 	53
-----------------------CGAACATGGATCTAGTGCACG 	4
-----------------------CGAACATGGATCTAGTGCACGGT 	1
-----------------------CGAACATGGATCTAGTGCACGG 	23
-----------------------CGAACATGGATCTAGTGCAC 	1
------------------------GAACATGGATCTAGTGCACGG 	3
------------------------GAACATGGATCTAGTGCAC 	1
--------------------------------------------GTGGTTCATGATTAAGTTCG 	14
--------------------------------------------GTGGTTCATGATTAAGTTC 	6
------------------------------------------------------------TTCGTGACTAGATTTCATGCTCGTC 	1
-------------------------------------------------------------TCGTGACTAGATTTCATGC 	1
--------------------------------------------------------------CGTGACTAGATTTCATGCTCGTC 	2
---------------------------------------------------------------GTGACTAGATTTCATGCTCGTCT 	227
---------------------------------------------------------------GTGACTAGATTTCATGCTCGTCTA 	3
---------------------------------------------------------------GTGACTAGATTTCATGCTCGT 	7
---------------------------------------------------------------GTGACTAGATTTCATGCTCG 	2
---------------------------------------------------------------GTGACTAGATTTCATGCTCGTC 	143
---------------------------------------------------------------GTGACTAGATTTCATGCTC 	1
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCTA 	25011
----------------------------------------------------------------TGACTAGATTTCATGCTCGTC 	61121
----------------------------------------------------------------TGACTAGATTTCATGCTCGT 	2060
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCTATT 	38
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCT 	169808
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCTAT 	4385
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCTATTA 	5
----------------------------------------------------------------TGACTAGATTTCATGCTCG 	536
-----------------------------------------------------------------GACTAGATTTCATGCTCGTCT 	113
-----------------------------------------------------------------GACTAGATTTCATGCTCGTC 	41
-----------------------------------------------------------------GACTAGATTTCATGCTCGTCTAT 	8
-----------------------------------------------------------------GACTAGATTTCATGCTCGTCTA 	36
-----------------------------------------------------------------GACTAGATTTCATGCTCGT 	3
------------------------------------------------------------------ACTAGATTTCATGCTCGTCTA 	4
------------------------------------------------------------------ACTAGATTTCATGCTCGTCT 	30
------------------------------------------------------------------ACTAGATTTCATGCTCGTC 	9
-------------------------------------------------------------------CTAGATTTCATGCTCGTCT 	17
-------------------------------------------------------------------CTAGATTTCATGCTCGTCTAT 	1
-------------------------------------------------------------------CTAGATTTCATGCTCGTCTA 	3
--------------------------------------------------------------------TAGATTTCATGCTCGTCTA 	2


Overlaps with: MNEST036569 MNEST036570
Overlaps with miRBase pre-miRNAs: dme-mir-996
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Drosophila melanogaster GSM399110-16285 TGACTAGATTTCATGCTCGTCT GCGAACATGGATCTAGTGCACG down 2 2


Secondary structure

CTTTTCTGACTCTATTTTGTCGGCGAACATGGATCTAGTGCACGGTGGTTCATGATTAAGTTCGTGACTAGATTTCATGCTCGTCTATTAAGTTGGGTCAGCACA
---------------------GGCGAACATGGATCTAGTGCA 	208
---------------------GGCGAACATGGATCTAGTGC 	22
---------------------GGCGAACATGGATCTAGTGCACG 	1428
---------------------GGCGAACATGGATCTAGTG 	20
---------------------GGCGAACATGGATCTAGTGCAC 	47
----------------------GCGAACATGGATCTAGTGCA 	43
----------------------GCGAACATGGATCTAGTGCAC 	47
----------------------GCGAACATGGATCTAGTGC 	8
----------------------GCGAACATGGATCTAGTGCACGGTG 	2
----------------------GCGAACATGGATCTAGTGCACGG 	22
----------------------GCGAACATGGATCTAGTGCACG 	1001
-----------------------CGAACATGGATCTAGTGCACG 	14
-----------------------CGAACATGGATCTAGTGCACGG 	3
-----------------------CGAACATGGATCTAGTGCAC 	2
--------------------------------------------GTGGTTCATGATTAAGTTCG 	1
---------------------------------------------------------------GTGACTAGATTTCATGCTCGTCT 	30
---------------------------------------------------------------GTGACTAGATTTCATGCTCGTC 	49
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCTA 	11149
----------------------------------------------------------------TGACTAGATTTCATGCTCGT 	943
----------------------------------------------------------------TGACTAGATTTCATGCTCGTC 	5768
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCTATT 	2
----------------------------------------------------------------TGACTAGATTTCATGCTCG 	202
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCT 	21441
----------------------------------------------------------------TGACTAGATTTCATGCTCGTCTAT 	351
-----------------------------------------------------------------GACTAGATTTCATGCTCGTCT 	14
-----------------------------------------------------------------GACTAGATTTCATGCTCGTC 	19
-----------------------------------------------------------------GACTAGATTTCATGCTCGTCTA 	29
------------------------------------------------------------------ACTAGATTTCATGCTCGTCTA 	1
------------------------------------------------------------------ACTAGATTTCATGCTCGTCT 	2
--------------------------------------------------------------------TAGATTTCATGCTCGTCTA 	1


Overlaps with: MNEST036569 MNEST036570
Overlaps with miRBase pre-miRNAs: dme-mir-996
HuntMi prediction: true miRNA