miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TGACTAGATTTTCACTTATCCT

selected species: Bombyx mori

3 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Bombyx mori	GSM449725_whole_body_clean	TGACTAGATTTTCACTTATCCT	GATGAGTGACCGTTTAGTTCAAG	down	3	1

Secondary structure

CAGTAATCCTCAAACGCATGTAGAAACATGGTTTCCTCAGACGATGAGTGACCGTTTAGTTCAAGTTGTCAATTCTTGACTAGATTTTCACTTATCCTCTGCGGGCACCGAGTCTGCTTTTGATGTTGAATCTTGGA
----------------------------------------------------------------------------TGACTAGATTTTCACTTATCCT 	47
----------------------------------------------------------------------------TGACTAGATTTTCACTTATC 	1
----------------------------------------------------------------------------TGACTAGATTTTCACTTATCC 	1
----------------------------------------------------------------------------TGACTAGATTTTCACTTAT 	1

Overlaps with: MNEST035555
Overlaps with miRBase pre-miRNAs: bmo-mir-279d
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Bombyx mori	GSM449726_Anterior_silkgland_clean	TGACTAGATTTTCACTTATCCT	GATGAGTGACCGTTTAGTTCAAG	down	3	1

Secondary structure

CAGTAATCCTCAAACGCATGTAGAAACATGGTTTCCTCAGACGATGAGTGACCGTTTAGTTCAAGTTGTCAATTCTTGACTAGATTTTCACTTATCCTCTGCGGGCACCGAGTCTGCTTTTGATGTTGAATCTTGGA
------------------------------------------GATGAGTGACCGTTTAGTTCAA 	5
------------------------------------------GATGAGTGACCGTTTAGTTCAAG 	5
------------------------------------------GATGAGTGACCGTTTAGTTCA 	2
------------------------------------------GATGAGTGACCGTTTAGTTC 	1
-------------------------------------------ATGAGTGACCGTTTAGTTCAAG 	1
----------------------------------------------------------------------------TGACTAGATTTTCACTTATCCT 	418
----------------------------------------------------------------------------TGACTAGATTTTCACTTATCC 	25
----------------------------------------------------------------------------TGACTAGATTTTCACTTAT 	4
----------------------------------------------------------------------------TGACTAGATTTTCACTTATC 	2
-----------------------------------------------------------------------------GACTAGATTTTCACTTATCC 	1
-----------------------------------------------------------------------------GACTAGATTTTCACTTATCCT 	1

Overlaps with: MNEST035555
Overlaps with miRBase pre-miRNAs: bmo-mir-279d
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Bombyx mori	GSM449727_Posterior_silkgland_clean	TGACTAGATTTTCACTTATCCT	GATGAGTGACCGTTTAGTTCAAG	down	3	1

Secondary structure

CAGTAATCCTCAAACGCATGTAGAAACATGGTTTCCTCAGACGATGAGTGACCGTTTAGTTCAAGTTGTCAATTCTTGACTAGATTTTCACTTATCCTCTGCGGGCACCGAGTCTGCTTTTGATGTTGAATCTTGGA
----------------------------------------------------------------------------TGACTAGATTTTCACTTATCCT 	28
----------------------------------------------------------------------------TGACTAGATTTTCACTTATCC 	3
------------------------------------------------------------------------------ACTAGATTTTCACTTATCCT 	1

Overlaps with: MNEST035555
Overlaps with miRBase pre-miRNAs: bmo-mir-279d
HuntMi prediction: true miRNA