miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGAGAAAGACTTGAGAGGACA

selected species: Physcomitrella patens



18 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM115097 TGAGAAAGACTTGAGAGGACA TTCTTTCAAGCCTTCCTCGGA up 3 0


Secondary structure

CTCTCTAGGTCTGAGAAAGACTTGAGAGGACACTCCTACAATAGCCTCGGGAACTGCATGACGTTTTTCATTAGATGAGGTGGTTCCCTGAGCATTTGCAGGACAGTTCTTTCAAGCCTTCCTCGGACTTTGGAT
-----------TGAGAAAGACTTGAGAGGAC 	1
-----------TGAGAAAGACTTGAGAGGACA 	21


Overlaps with: MNEST039584 MNEST051453
Overlaps with miRBase pre-miRNAs: ppt-MIR1026a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM115097 TGAGAAAGACTTGAGAGGACA TTCTCTCTAGTCTTTCTTGGA up 2 0


Secondary structure

TAATTGAGACTCTCTGAACTCTGAGAAAGACTTGAGAGGACACTCCTGCAACAACTGTGGCAATTCCATGCAGTTATAGCAGCATCTGCAGCGGCGGTTCTCTCTAGTCTTTCTTGGACTTTGGATGGCTTCTTCT
---------------------TGAGAAAGACTTGAGAGGAC 	1
---------------------TGAGAAAGACTTGAGAGGACA 	21


Overlaps with: MNEST039585 MNEST051454
Overlaps with miRBase pre-miRNAs: ppt-MIR1026b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM313212 TGAGAAAGACTTGAGAGGACA TTCTTTCAAGCCTTCCTCGGA up 3 0


Secondary structure

CTCTCTAGGTCTGAGAAAGACTTGAGAGGACACTCCTACAATAGCCTCGGGAACTGCATGACGTTTTTCATTAGATGAGGTGGTTCCCTGAGCATTTGCAGGACAGTTCTTTCAAGCCTTCCTCGGACTTTGGAT
-----------TGAGAAAGACTTGAGAGGA 	4
-----------TGAGAAAGACTTGAGAGGAC 	12
-----------TGAGAAAGACTTGAGAGGACA 	161
-----------TGAGAAAGACTTGAGAGGACAC 	2
------------GAGAAAGACTTGAGAGGACA 	1


Overlaps with: MNEST039584 MNEST051453
Overlaps with miRBase pre-miRNAs: ppt-MIR1026a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Physcomitrella patens GSM313212 TGAGAAAGACTTGAGAGGACA TTCTCTCTAGTCTTTCTTGGA up 2 0


Secondary structure

TAATTGAGACTCTCTGAACTCTGAGAAAGACTTGAGAGGACACTCCTGCAACAACTGTGGCAATTCCATGCAGTTATAGCAGCATCTGCAGCGGCGGTTCTCTCTAGTCTTTCTTGGACTTTGGATGGCTTCTTCT
------------------CTCTGAGAAAGACTTGAGAGGAC 	1
---------------------TGAGAAAGACTTGAGAGGA 	4
---------------------TGAGAAAGACTTGAGAGGAC 	12
---------------------TGAGAAAGACTTGAGAGGACA 	161
---------------------TGAGAAAGACTTGAGAGGACAC 	2
----------------------GAGAAAGACTTGAGAGGACA 	1
-------------------------------------------------------------------------------------------------TTCTCTCTAGTCTTTCTTGGA 	4
----------------------------------------------------------------------------------------------------TCTCTAGTCTTTCTTGGACTT 	1


Overlaps with: MNEST039585 MNEST051454
Overlaps with miRBase pre-miRNAs: ppt-MIR1026b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Physcomitrella patens GSM115095 TGAGAAAGACTTGAGAGGACA TTCTTTCAAGCCTTCCTCGGA up 3 0


Secondary structure

CTCTCTAGGTCTGAGAAAGACTTGAGAGGACACTCCTACAATAGCCTCGGGAACTGCATGACGTTTTTCATTAGATGAGGTGGTTCCCTGAGCATTTGCAGGACAGTTCTTTCAAGCCTTCCTCGGACTTTGGAT
-----------TGAGAAAGACTTGAGAGGAC 	4
-----------TGAGAAAGACTTGAGAGGACA 	89


Overlaps with: MNEST039584 MNEST051453
Overlaps with miRBase pre-miRNAs: ppt-MIR1026a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Physcomitrella patens GSM115095 TGAGAAAGACTTGAGAGGACA TTCTCTCTAGTCTTTCTTGGA up 2 0


Secondary structure

TAATTGAGACTCTCTGAACTCTGAGAAAGACTTGAGAGGACACTCCTGCAACAACTGTGGCAATTCCATGCAGTTATAGCAGCATCTGCAGCGGCGGTTCTCTCTAGTCTTTCTTGGACTTTGGATGGCTTCTTCT
---------------------TGAGAAAGACTTGAGAGGAC 	4
---------------------TGAGAAAGACTTGAGAGGACA 	89
-------------------------------------------------------------------------------------------------TTCTCTCTAGTCTTTCTTGGA 	6


Overlaps with: MNEST039585 MNEST051454
Overlaps with miRBase pre-miRNAs: ppt-MIR1026b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Physcomitrella patens GSM313213 TGAGAAAGACTTGAGAGGACA TTCTTTCAAGCCTTCCTCGGA up 3 0


Secondary structure

CTCTCTAGGTCTGAGAAAGACTTGAGAGGACACTCCTACAATAGCCTCGGGAACTGCATGACGTTTTTCATTAGATGAGGTGGTTCCCTGAGCATTTGCAGGACAGTTCTTTCAAGCCTTCCTCGGACTTTGGAT
----------CTGAGAAAGACTTGAGAGGACA 	1
-----------TGAGAAAGACTTGAGAGGA 	2
-----------TGAGAAAGACTTGAGAGGAC 	14
-----------TGAGAAAGACTTGAGAGGACA 	159
-----------TGAGAAAGACTTGAGAGGACAC 	4
------------GAGAAAGACTTGAGAGGACA 	1


Overlaps with: MNEST039584 MNEST051453
Overlaps with miRBase pre-miRNAs: ppt-MIR1026a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Physcomitrella patens GSM313213 TGAGAAAGACTTGAGAGGACA TTCTCTCTAGTCTTTCTTGGA up 2 0


Secondary structure

TAATTGAGACTCTCTGAACTCTGAGAAAGACTTGAGAGGACACTCCTGCAACAACTGTGGCAATTCCATGCAGTTATAGCAGCATCTGCAGCGGCGGTTCTCTCTAGTCTTTCTTGGACTTTGGATGGCTTCTTCT
--------------------CTGAGAAAGACTTGAGAGGACA 	1
---------------------TGAGAAAGACTTGAGAGGA 	2
---------------------TGAGAAAGACTTGAGAGGAC 	14
---------------------TGAGAAAGACTTGAGAGGACA 	159
---------------------TGAGAAAGACTTGAGAGGACAC 	4
----------------------GAGAAAGACTTGAGAGGACA 	1
-------------------------------------------------------------------------------------------------TTCTCTCTAGTCTTTCTTGGA 	2


Overlaps with: MNEST039585 MNEST051454
Overlaps with miRBase pre-miRNAs: ppt-MIR1026b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Physcomitrella patens GSM313215 TGAGAAAGACTTGAGAGGACA TTCTTTCAAGCCTTCCTCGGA up 3 0


Secondary structure

CTCTCTAGGTCTGAGAAAGACTTGAGAGGACACTCCTACAATAGCCTCGGGAACTGCATGACGTTTTTCATTAGATGAGGTGGTTCCCTGAGCATTTGCAGGACAGTTCTTTCAAGCCTTCCTCGGACTTTGGAT
-----------TGAGAAAGACTTGAGAGGAC 	26
-----------TGAGAAAGACTTGAGAGGA 	12
-----------TGAGAAAGACTTGAGAGGACA 	212
-----------TGAGAAAGACTTGAGAGGACAC 	2
------------GAGAAAGACTTGAGAGGACA 	1


Overlaps with: MNEST039584 MNEST051453
Overlaps with miRBase pre-miRNAs: ppt-MIR1026a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Physcomitrella patens GSM313215 TGAGAAAGACTTGAGAGGACA TTCTCTCTAGTCTTTCTTGGA up 2 0


Secondary structure

TAATTGAGACTCTCTGAACTCTGAGAAAGACTTGAGAGGACACTCCTGCAACAACTGTGGCAATTCCATGCAGTTATAGCAGCATCTGCAGCGGCGGTTCTCTCTAGTCTTTCTTGGACTTTGGATGGCTTCTTCT
---------------------TGAGAAAGACTTGAGAGGAC 	26
---------------------TGAGAAAGACTTGAGAGGA 	12
---------------------TGAGAAAGACTTGAGAGGACA 	212
---------------------TGAGAAAGACTTGAGAGGACAC 	2
----------------------GAGAAAGACTTGAGAGGACA 	1
-------------------------------------------------------------------------------------------------TTCTCTCTAGTCTTTCTTGGA 	10


Overlaps with: MNEST039585 MNEST051454
Overlaps with miRBase pre-miRNAs: ppt-MIR1026b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Physcomitrella patens GSM115096 TGAGAAAGACTTGAGAGGACA TTCTTTCAAGCCTTCCTCGGA up 3 0


Secondary structure

CTCTCTAGGTCTGAGAAAGACTTGAGAGGACACTCCTACAATAGCCTCGGGAACTGCATGACGTTTTTCATTAGATGAGGTGGTTCCCTGAGCATTTGCAGGACAGTTCTTTCAAGCCTTCCTCGGACTTTGGAT
-----------TGAGAAAGACTTGAGAGGAC 	5
-----------TGAGAAAGACTTGAGAGGACA 	84
------------GAGAAAGACTTGAGAGGACA 	1


Overlaps with: MNEST039584 MNEST051453
Overlaps with miRBase pre-miRNAs: ppt-MIR1026a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Physcomitrella patens GSM115096 TGAGAAAGACTTGAGAGGACA TTCTCTCTAGTCTTTCTTGGA up 2 0


Secondary structure

TAATTGAGACTCTCTGAACTCTGAGAAAGACTTGAGAGGACACTCCTGCAACAACTGTGGCAATTCCATGCAGTTATAGCAGCATCTGCAGCGGCGGTTCTCTCTAGTCTTTCTTGGACTTTGGATGGCTTCTTCT
---------------------TGAGAAAGACTTGAGAGGAC 	5
---------------------TGAGAAAGACTTGAGAGGACA 	84
----------------------GAGAAAGACTTGAGAGGACA 	1


Overlaps with: MNEST039585 MNEST051454
Overlaps with miRBase pre-miRNAs: ppt-MIR1026b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Physcomitrella patens GSM313216 TGAGAAAGACTTGAGAGGACA TTCTTTCAAGCCTTCCTCGGA up 3 0


Secondary structure

CTCTCTAGGTCTGAGAAAGACTTGAGAGGACACTCCTACAATAGCCTCGGGAACTGCATGACGTTTTTCATTAGATGAGGTGGTTCCCTGAGCATTTGCAGGACAGTTCTTTCAAGCCTTCCTCGGACTTTGGAT
---------TCTGAGAAAGACTTGAGAGGAC 	1
-----------TGAGAAAGACTTGAGAGGA 	18
-----------TGAGAAAGACTTGAGAGGAC 	23
-----------TGAGAAAGACTTGAGAGGACACTC 	1
-----------TGAGAAAGACTTGAGAGGACA 	198
-----------TGAGAAAGACTTGAGAGGACACT 	1
-----------TGAGAAAGACTTGAGAGGACAC 	5
------------GAGAAAGACTTGAGAGGACA 	3


Overlaps with: MNEST039584 MNEST051453
Overlaps with miRBase pre-miRNAs: ppt-MIR1026a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Physcomitrella patens GSM313216 TGAGAAAGACTTGAGAGGACA TTCTCTCTAGTCTTTCTTGGA up 2 0


Secondary structure

TAATTGAGACTCTCTGAACTCTGAGAAAGACTTGAGAGGACACTCCTGCAACAACTGTGGCAATTCCATGCAGTTATAGCAGCATCTGCAGCGGCGGTTCTCTCTAGTCTTTCTTGGACTTTGGATGGCTTCTTCT
-------------------TCTGAGAAAGACTTGAGAGGAC 	1
---------------------TGAGAAAGACTTGAGAGGA 	18
---------------------TGAGAAAGACTTGAGAGGAC 	23
---------------------TGAGAAAGACTTGAGAGGACACTC 	1
---------------------TGAGAAAGACTTGAGAGGACA 	198
---------------------TGAGAAAGACTTGAGAGGACACT 	1
---------------------TGAGAAAGACTTGAGAGGACAC 	5
----------------------GAGAAAGACTTGAGAGGACA 	3
-------------------------------------------------------------------------------------------------TTCTCTCTAGTCTTTCTTGGA 	16


Overlaps with: MNEST039585 MNEST051454
Overlaps with miRBase pre-miRNAs: ppt-MIR1026b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Physcomitrella patens GSM313214 TGAGAAAGACTTGAGAGGACA TTCTTTCAAGCCTTCCTCGGA up 3 0


Secondary structure

CTCTCTAGGTCTGAGAAAGACTTGAGAGGACACTCCTACAATAGCCTCGGGAACTGCATGACGTTTTTCATTAGATGAGGTGGTTCCCTGAGCATTTGCAGGACAGTTCTTTCAAGCCTTCCTCGGACTTTGGAT
-----------TGAGAAAGACTTGAGAGGA 	13
-----------TGAGAAAGACTTGAGAGGACACT 	1
-----------TGAGAAAGACTTGAGAGGACA 	265
-----------TGAGAAAGACTTGAGAGGAC 	23
------------GAGAAAGACTTGAGAGGACA 	3


Overlaps with: MNEST039584 MNEST051453
Overlaps with miRBase pre-miRNAs: ppt-MIR1026a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Physcomitrella patens GSM313214 TGAGAAAGACTTGAGAGGACA TTCTCTCTAGTCTTTCTTGGA up 2 0


Secondary structure

TAATTGAGACTCTCTGAACTCTGAGAAAGACTTGAGAGGACACTCCTGCAACAACTGTGGCAATTCCATGCAGTTATAGCAGCATCTGCAGCGGCGGTTCTCTCTAGTCTTTCTTGGACTTTGGATGGCTTCTTCT
---------------------TGAGAAAGACTTGAGAGGA 	13
---------------------TGAGAAAGACTTGAGAGGACACT 	1
---------------------TGAGAAAGACTTGAGAGGACA 	265
---------------------TGAGAAAGACTTGAGAGGAC 	23
----------------------GAGAAAGACTTGAGAGGACA 	3
-----------------------------------GAGGACACTCCTGCAACAACT 	1
-------------------------------------------------------------------------------------------------TTCTCTCTAGTCTTTCTTGGA 	20


Overlaps with: MNEST039585 MNEST051454
Overlaps with miRBase pre-miRNAs: ppt-MIR1026b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Physcomitrella patens GSM313217 TGAGAAAGACTTGAGAGGACA TTCTTTCAAGCCTTCCTCGGA up 3 0


Secondary structure

CTCTCTAGGTCTGAGAAAGACTTGAGAGGACACTCCTACAATAGCCTCGGGAACTGCATGACGTTTTTCATTAGATGAGGTGGTTCCCTGAGCATTTGCAGGACAGTTCTTTCAAGCCTTCCTCGGACTTTGGAT
-----------TGAGAAAGACTTGAGAGGA 	13
-----------TGAGAAAGACTTGAGAGGAC 	29
-----------TGAGAAAGACTTGAGAGGACACTC 	3
-----------TGAGAAAGACTTGAGAGGACA 	223
-----------TGAGAAAGACTTGAGAGGACAC 	4
-------------AGAAAGACTTGAGAGGACA 	1


Overlaps with: MNEST039584 MNEST051453
Overlaps with miRBase pre-miRNAs: ppt-MIR1026a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
18 Physcomitrella patens GSM313217 TGAGAAAGACTTGAGAGGACA TTCTCTCTAGTCTTTCTTGGA up 2 0


Secondary structure

TAATTGAGACTCTCTGAACTCTGAGAAAGACTTGAGAGGACACTCCTGCAACAACTGTGGCAATTCCATGCAGTTATAGCAGCATCTGCAGCGGCGGTTCTCTCTAGTCTTTCTTGGACTTTGGATGGCTTCTTCT
------------------CTCTGAGAAAGACTTGAGAGG 	1
---------------------TGAGAAAGACTTGAGAGGA 	13
---------------------TGAGAAAGACTTGAGAGGAC 	29
---------------------TGAGAAAGACTTGAGAGGACACTC 	3
---------------------TGAGAAAGACTTGAGAGGACA 	223
---------------------TGAGAAAGACTTGAGAGGACAC 	4
-----------------------AGAAAGACTTGAGAGGACA 	1
-------------------------------------------------------------------------------------------------TTCTCTCTAGTCTTTCTTGGA 	10


Overlaps with: MNEST039585 MNEST051454
Overlaps with miRBase pre-miRNAs: ppt-MIR1026b
HuntMi prediction: true miRNA