miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TGAGAACTGAATTCCAAGGGTG

selected species: Danio rerio

3 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Danio rerio	GSM540644	TGAGAACTGAATTCCAAGGGTG	CCCACGGAGTTCAGTTCTTAAG	up	4	0

Secondary structure

GTTACACTGAGCTCTTGGCTTTGAGAACTGAATTCCAAGGGTGTCTGCTTTATATTCAGCCCACGGAGTTCAGTTCTTAAGTTTGGATGCTCACGGCCG
--------------------TTGAGAACTGAATTCCAAGGGTGT 	1
---------------------TGAGAACTGAATTCCAAGGGTGTC 	1
---------------------TGAGAACTGAATTCCAAGGGTGT 	2
---------------------TGAGAACTGAATTCCAAGGGTG 	7
-------------------------------------------------------------CACGGAGTTCAGTTCTTAAGT 	1

Overlaps with: MNEST034319 MNEST034320
Overlaps with miRBase pre-miRNAs: dre-mir-146b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Danio rerio	GSM540645	TGAGAACTGAATTCCAAGGGTG	CCCACGGAGTTCAGTTCTTAAG	up	4	0

Secondary structure

GTTACACTGAGCTCTTGGCTTTGAGAACTGAATTCCAAGGGTGTCTGCTTTATATTCAGCCCACGGAGTTCAGTTCTTAAGTTTGGATGCTCACGGCCG
--------------------TTGAGAACTGAATTCCAAGGGTG 	11
--------------------TTGAGAACTGAATTCCAAGGGT 	23
--------------------TTGAGAACTGAATTCCAAGGG 	1
---------------------TGAGAACTGAATTCCAAGGGTGTC 	1
---------------------TGAGAACTGAATTCCAAGGGTGT 	58
---------------------TGAGAACTGAATTCCAAGGGTG 	315
---------------------TGAGAACTGAATTCCAAGGGT 	31
---------------------TGAGAACTGAATTCCAAGGG 	1
----------------------GAGAACTGAATTCCAAGGGTGT 	1
----------------------GAGAACTGAATTCCAAGGGTG 	1

Overlaps with: MNEST034319 MNEST034320
Overlaps with miRBase pre-miRNAs: dre-mir-146b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Danio rerio	GSM540646	TGAGAACTGAATTCCAAGGGTG	CCCACGGAGTTCAGTTCTTAAG	up	4	0

Secondary structure

GTTACACTGAGCTCTTGGCTTTGAGAACTGAATTCCAAGGGTGTCTGCTTTATATTCAGCCCACGGAGTTCAGTTCTTAAGTTTGGATGCTCACGGCCG
--------------------TTGAGAACTGAATTCCAAGGGTG 	92
--------------------TTGAGAACTGAATTCCAAGGG 	4
--------------------TTGAGAACTGAATTCCAAGGGT 	144
--------------------TTGAGAACTGAATTCCAAGGGTGT 	8
---------------------TGAGAACTGAATTCCAAGGGTGTCT 	1
---------------------TGAGAACTGAATTCCAAGGGTGTC 	4
---------------------TGAGAACTGAATTCCAAGGGTGT 	627
---------------------TGAGAACTGAATTCCAAGGGTG 	2081
---------------------TGAGAACTGAATTCCAAGGGT 	99
---------------------TGAGAACTGAATTCCAAGGG 	5
----------------------GAGAACTGAATTCCAAGGGTG 	6
------------------------------------------------------------CCACGGAGTTCAGTTCTTAAGT 	2
-------------------------------------------------------------CACGGAGTTCAGTTCTTAAGT 	2

Overlaps with: MNEST034319 MNEST034320
Overlaps with miRBase pre-miRNAs: dre-mir-146b
HuntMi prediction: true miRNA