miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGAGACCAAATGAGCAGCTGA

selected species: Glycine max



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Glycine max GSM543396 TGAGACCAAATGAGCAGCTGA AGCTGCTCATCTGTTCTCAGG up 2 0


Secondary structure

CAGGATCGTCCTGAGACCAAATGAGCAGCTGACCACATGATGCAGCTATGTTTGCTATTCAGCTGCTCATCTGTTCTCAGGTCGCCCTT
--------TCCTGAGACCAAATGAGCAGC 	46
----------CTGAGACCAAATGAGCAGCTGA 	16
-----------TGAGACCAAATGAGCAGCTGA 	26869
-----------TGAGACCAAATGAGCAGCTG 	119
-----------TGAGACCAAATGAGCAGCT 	10
------------GAGACCAAATGAGCAGCTGA 	11


Overlaps with: MNEST040643 MNEST040644
Overlaps with miRBase pre-miRNAs: gso-MIR3522a gma-MIR3522 gso-MIR3522b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Glycine max GSM852280 TGAGACCAAATGAGCAGCTGA AGCTGCTCATCTGTTCTCAGG up 2 0


Secondary structure

CAGGATCGTCCTGAGACCAAATGAGCAGCTGACCACATGATGCAGCTATGTTTGCTATTCAGCTGCTCATCTGTTCTCAGGTCGCCCTT
--------TCCTGAGACCAAATGAGCAGC 	5
-----------TGAGACCAAATGAGCAGCTGA 	8139
-----------TGAGACCAAATGAGCAGCTG 	142
-----------TGAGACCAAATGAGCAGCT 	7
-----------TGAGACCAAATGAGCAGCTGAC 	1
------------GAGACCAAATGAGCAGCTGA 	4
------------GAGACCAAATGAGCAGCTGA 	4
-------------AGACCAAATGAGCAGCTGA 	2
-------------AGACCAAATGAGCAGCTGA 	2
------------------------------------------------------------AGCTGCTCATCTGTTCTCAGG 	119


Overlaps with: MNEST040643 MNEST040644
Overlaps with miRBase pre-miRNAs: gso-MIR3522a gma-MIR3522 gso-MIR3522b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Glycine max GSM543394 TGAGACCAAATGAGCAGCTGA AGCTGCTCATCTGTTCTCAGG up 2 0


Secondary structure

CAGGATCGTCCTGAGACCAAATGAGCAGCTGACCACATGATGCAGCTATGTTTGCTATTCAGCTGCTCATCTGTTCTCAGGTCGCCCTT
--------TCCTGAGACCAAATGAGCAGC 	8
-----------TGAGACCAAATGAGCAGCTGA 	7572
-----------TGAGACCAAATGAGCAGCTG 	17
------------GAGACCAAATGAGCAGCTGA 	83
-------------AGACCAAATGAGCAGCTGA 	5


Overlaps with: MNEST040643 MNEST040644
Overlaps with miRBase pre-miRNAs: gso-MIR3522a gma-MIR3522 gso-MIR3522b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Glycine max GSM543393 TGAGACCAAATGAGCAGCTGA AGCTGCTCATCTGTTCTCAGG up 2 0


Secondary structure

CAGGATCGTCCTGAGACCAAATGAGCAGCTGACCACATGATGCAGCTATGTTTGCTATTCAGCTGCTCATCTGTTCTCAGGTCGCCCTT
--------TCCTGAGACCAAATGAGCAGC 	19
-----------TGAGACCAAATGAGCAGCTGA 	5549
-----------TGAGACCAAATGAGCAGCTG 	21
------------GAGACCAAATGAGCAGCTGA 	72


Overlaps with: MNEST040643 MNEST040644
Overlaps with miRBase pre-miRNAs: gso-MIR3522a gma-MIR3522 gso-MIR3522b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Glycine max GSM543395 TGAGACCAAATGAGCAGCTGA AGCTGCTCATCTGTTCTCAGG up 2 0


Secondary structure

CAGGATCGTCCTGAGACCAAATGAGCAGCTGACCACATGATGCAGCTATGTTTGCTATTCAGCTGCTCATCTGTTCTCAGGTCGCCCTT
--------TCCTGAGACCAAATGAGCAGCTGA 	8
--------TCCTGAGACCAAATGAGCAGC 	388
--------TCCTGAGACCAAATGAGCAG 	5
----------CTGAGACCAAATGAGCAGCTGA 	199
-----------TGAGACCAAATGAGCAGCTGACC 	8
-----------TGAGACCAAATGAGCAGCTGAC 	56
-----------TGAGACCAAATGAGCAGCTGA 	336419
-----------TGAGACCAAATGAGCAGCTG 	485
-----------TGAGACCAAATGAGCAGCT 	69
------------GAGACCAAATGAGCAGCTGAC 	20
------------GAGACCAAATGAGCAGCTGA 	154
-------------AGACCAAATGAGCAGCTGA 	127
------------------------------------------------------------AGCTGCTCATCTGTTCTCAGG 	30


Overlaps with: MNEST040643 MNEST040644
Overlaps with miRBase pre-miRNAs: gso-MIR3522a gma-MIR3522 gso-MIR3522b
HuntMi prediction: true miRNA