miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGAGACCTCTGGGTTCTGAGC

selected species: Sus scrofa



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Sus scrofa GSM636844 TGAGACCTCTGGGTTCTGAGC TGGGATCTCTGGGGTCTTGGT up 3 0


Secondary structure

GCGCTCTGACCTGAGACCTCTGGGTTCTGAGCTGTGATGTTGCTTCCAAGCTGGGATCTCTGGGGTCTTGGTTCAGGGTC
----------CTGAGACCTCTGGGTTCTGAGC 	3
-----------TGAGACCTCTGGGTTCTGAGCT 	12
-----------TGAGACCTCTGGGTTCTGAGCTG 	2
-----------TGAGACCTCTGGGTTCTGAG 	3
-----------TGAGACCTCTGGGTTCTGAGC 	110
------------GAGACCTCTGGGTTCTGAGC 	2
--------------------------------------------------CTGGGATCTCTGGGGTCTTGG 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Sus scrofa GSM636847 TGAGACCTCTGGGTTCTGAGC TGGGATCTCTGGGGTCTTGGT up 3 0


Secondary structure

GCGCTCTGACCTGAGACCTCTGGGTTCTGAGCTGTGATGTTGCTTCCAAGCTGGGATCTCTGGGGTCTTGGTTCAGGGTC
----------CTGAGACCTCTGGGTTCTGAGC 	2
-----------TGAGACCTCTGGGTTCTGAGCT 	7
-----------TGAGACCTCTGGGTTCTGAGCTG 	1
-----------TGAGACCTCTGGGTTCTGAGC 	95
------------GAGACCTCTGGGTTCTGAGC 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Sus scrofa GSM636849 TGAGACCTCTGGGTTCTGAGC TGGGATCTCTGGGGTCTTGGT up 3 0


Secondary structure

GCGCTCTGACCTGAGACCTCTGGGTTCTGAGCTGTGATGTTGCTTCCAAGCTGGGATCTCTGGGGTCTTGGTTCAGGGTC
----------CTGAGACCTCTGGGTTCTGAGCT 	1
----------CTGAGACCTCTGGGTTCTGAGC 	2
-----------TGAGACCTCTGGGTTCTGAGCT 	12
-----------TGAGACCTCTGGGTTCTGAG 	2
-----------TGAGACCTCTGGGTTCTGAGC 	81
--------------------------------------------------CTGGGATCTCTGGGGTCTTGGT 	1
---------------------------------------------------TGGGATCTCTGGGGTCTTGGTT 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Sus scrofa GSM636848 TGAGACCTCTGGGTTCTGAGC TGGGATCTCTGGGGTCTTGGT up 3 0


Secondary structure

GCGCTCTGACCTGAGACCTCTGGGTTCTGAGCTGTGATGTTGCTTCCAAGCTGGGATCTCTGGGGTCTTGGTTCAGGGTC
----------CTGAGACCTCTGGGTTCTGAGC 	10
----------CTGAGACCTCTGGGTTCTGAGCT 	6
-----------TGAGACCTCTGGGTTCTGAGCTG 	1
-----------TGAGACCTCTGGGTTCTGAGCT 	95
-----------TGAGACCTCTGGGTTCTGAG 	5
-----------TGAGACCTCTGGGTTCTGAGC 	326
------------GAGACCTCTGGGTTCTGAGC 	4
--------------------------------------------------CTGGGATCTCTGGGGTCTTGGT 	1
--------------------------------------------------CTGGGATCTCTGGGGTCTTGG 	1
--------------------------------------------------CTGGGATCTCTGGGGTCTTGGTT 	5
---------------------------------------------------TGGGATCTCTGGGGTCTTGGT 	3
---------------------------------------------------TGGGATCTCTGGGGTCTTGGTT 	8


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Sus scrofa GSM636846 TGAGACCTCTGGGTTCTGAGC TGGGATCTCTGGGGTCTTGGT up 3 0


Secondary structure

GCGCTCTGACCTGAGACCTCTGGGTTCTGAGCTGTGATGTTGCTTCCAAGCTGGGATCTCTGGGGTCTTGGTTCAGGGTC
----------CTGAGACCTCTGGGTTCTGAGCT 	1
----------CTGAGACCTCTGGGTTCTGAGC 	4
-----------TGAGACCTCTGGGTTCTGAGCT 	25
-----------TGAGACCTCTGGGTTCTGAG 	1
-----------TGAGACCTCTGGGTTCTGAGC 	94


HuntMi prediction: true miRNA