miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TGAGAGAAAGCCATGACTTAC

selected species: Glycine max

12 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Glycine max	GSM543396	TGAGAGAAAGCCATGACTTAC	AAGTCATGGCATTATCTCATA	up	2	0

Secondary structure

AACGCAAAAGATTGTGGTGCATGATCTGATATGAGAGAAAGCCATGACTTACACACGCATTGAAATCTAAGTTAAATATGTGTGTAAGTCATGGCATTATCTCATATCTAATCCTGACTTTGCAATATCTCATT
-------------------------------TGAGAGAAAGCCATGACTTAC 	11

Overlaps with miRBase pre-miRNAs: gma-MIR1513c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Glycine max	GSM543396	TGAGAGAAAGCCATGACTTAC	AAGTCATGGTTTTCTCTCATA	up	1	0

Secondary structure

CATCTGCAACAGGATCAGATATGAGAGAAAGCCATGACTTACACACACATTGAAATCTTAGTTTTAAATGTGTATAAGTCATGGTTTTCTCTCATATCTAATCCCCACTTTGCA
---------------------TGAGAGAAAGCCATGACTTAC 	11

Overlaps with: MNEST040494 MNEST048596
Overlaps with miRBase pre-miRNAs: gma-MIR1513a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Glycine max	GSM543396	TGAGAGAAAGCCATGACTTAC	AAATCATGACTTTCTCTTGTA	down	2	0

Secondary structure

TTCAAGTTTTCTGTTGGTTTCTATGCGTTTGTAAATCATGACTTTCTCTTGTATCTCATCTGAGTATATGAGAGAAAGCCATGACTTACACACGCATATGAAACAAAGTGCAGTCATA
--------------------------------------------------------------------TGAGAGAAAGCCATGACTTAC 	11

Overlaps with: MNEST003539
Overlaps with miRBase pre-miRNAs: gma-MIR1513b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Glycine max	GSM543394	TGAGAGAAAGCCATGACTTAC	AAGTCATGGCATTATCTCATA	up	2	0

Secondary structure

AACGCAAAAGATTGTGGTGCATGATCTGATATGAGAGAAAGCCATGACTTACACACGCATTGAAATCTAAGTTAAATATGTGTGTAAGTCATGGCATTATCTCATATCTAATCCTGACTTTGCAATATCTCATT
-------------------------------TGAGAGAAAGCCATGACTTAC 	31
-------------------------------------AAAGCCATGACTTACACACGC 	5

Overlaps with miRBase pre-miRNAs: gma-MIR1513c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Glycine max	GSM543394	TGAGAGAAAGCCATGACTTAC	AAGTCATGGTTTTCTCTCATA	up	1	0

Secondary structure

CATCTGCAACAGGATCAGATATGAGAGAAAGCCATGACTTACACACACATTGAAATCTTAGTTTTAAATGTGTATAAGTCATGGTTTTCTCTCATATCTAATCCCCACTTTGCA
---------------------TGAGAGAAAGCCATGACTTAC 	31

Overlaps with: MNEST040494 MNEST048596
Overlaps with miRBase pre-miRNAs: gma-MIR1513a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Glycine max	GSM543394	TGAGAGAAAGCCATGACTTAC	AAATCATGACTTTCTCTTGTA	down	2	0

Secondary structure

TTCAAGTTTTCTGTTGGTTTCTATGCGTTTGTAAATCATGACTTTCTCTTGTATCTCATCTGAGTATATGAGAGAAAGCCATGACTTACACACGCATATGAAACAAAGTGCAGTCATA
--------------------------------------------------------------------TGAGAGAAAGCCATGACTTAC 	31
--------------------------------------------------------------------------AAAGCCATGACTTACACACGC 	5

Overlaps with: MNEST003539
Overlaps with miRBase pre-miRNAs: gma-MIR1513b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Glycine max	GSM543393	TGAGAGAAAGCCATGACTTAC	AAGTCATGGCATTATCTCATA	up	2	0

Secondary structure

AACGCAAAAGATTGTGGTGCATGATCTGATATGAGAGAAAGCCATGACTTACACACGCATTGAAATCTAAGTTAAATATGTGTGTAAGTCATGGCATTATCTCATATCTAATCCTGACTTTGCAATATCTCATT
-------------------------------TGAGAGAAAGCCATGACTTAC 	16

Overlaps with miRBase pre-miRNAs: gma-MIR1513c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Glycine max	GSM543393	TGAGAGAAAGCCATGACTTAC	AAGTCATGGTTTTCTCTCATA	up	1	0

Secondary structure

CATCTGCAACAGGATCAGATATGAGAGAAAGCCATGACTTACACACACATTGAAATCTTAGTTTTAAATGTGTATAAGTCATGGTTTTCTCTCATATCTAATCCCCACTTTGCA
---------------------TGAGAGAAAGCCATGACTTAC 	16

Overlaps with: MNEST040494 MNEST048596
Overlaps with miRBase pre-miRNAs: gma-MIR1513a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Glycine max	GSM543393	TGAGAGAAAGCCATGACTTAC	AAATCATGACTTTCTCTTGTA	down	2	0

Secondary structure

TTCAAGTTTTCTGTTGGTTTCTATGCGTTTGTAAATCATGACTTTCTCTTGTATCTCATCTGAGTATATGAGAGAAAGCCATGACTTACACACGCATATGAAACAAAGTGCAGTCATA
--------------------------------AAATCATGACTTTCTCTTGTA 	7
--------------------------------------------------------------------TGAGAGAAAGCCATGACTTAC 	16

Overlaps with: MNEST003539
Overlaps with miRBase pre-miRNAs: gma-MIR1513b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Glycine max	GSM543395	TGAGAGAAAGCCATGACTTAC	AAGTCATGGCATTATCTCATA	up	2	0

Secondary structure

AACGCAAAAGATTGTGGTGCATGATCTGATATGAGAGAAAGCCATGACTTACACACGCATTGAAATCTAAGTTAAATATGTGTGTAAGTCATGGCATTATCTCATATCTAATCCTGACTTTGCAATATCTCATT
-------------------------------TGAGAGAAAGCCATGACTTAC 	42
-------------------------------------AAAGCCATGACTTACACACGC 	34

Overlaps with miRBase pre-miRNAs: gma-MIR1513c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Glycine max	GSM543395	TGAGAGAAAGCCATGACTTAC	AAGTCATGGTTTTCTCTCATA	up	1	0

Secondary structure

CATCTGCAACAGGATCAGATATGAGAGAAAGCCATGACTTACACACACATTGAAATCTTAGTTTTAAATGTGTATAAGTCATGGTTTTCTCTCATATCTAATCCCCACTTTGCA
---------------------TGAGAGAAAGCCATGACTTAC 	42

Overlaps with: MNEST040494 MNEST048596
Overlaps with miRBase pre-miRNAs: gma-MIR1513a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Glycine max	GSM543395	TGAGAGAAAGCCATGACTTAC	AAATCATGACTTTCTCTTGTA	down	2	0

Secondary structure

TTCAAGTTTTCTGTTGGTTTCTATGCGTTTGTAAATCATGACTTTCTCTTGTATCTCATCTGAGTATATGAGAGAAAGCCATGACTTACACACGCATATGAAACAAAGTGCAGTCATA
--------------------------------AAATCATGACTTTCTCTTGTA 	14
--------------------------------------------------------------------TGAGAGAAAGCCATGACTTAC 	42
--------------------------------------------------------------------------AAAGCCATGACTTACACACGC 	34

Overlaps with: MNEST003539
Overlaps with miRBase pre-miRNAs: gma-MIR1513b
HuntMi prediction: true miRNA