miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TGAGATCATCGTGAAAGCCAGT

selected species: Caenorhabditis elegans



9 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Caenorhabditis elegans GSM427344-5691 TGAGATCATCGTGAAAGCCAGT CGGTTTTCTCTGTGATCTACAGA down 4 1


Secondary structure

AGTGAACTCATGAAATAGGTTCTTTTAGCAACCGGTTTTCTCTGTGATCTACAGAATGACAGCTAATCGTCTGAGATCATCGTGAAAGCCAGTTGTTTTTATGAACTCTTATCAAGAAAATT
--------------------------------CGGTTTTCTCTGTGATCTACA 	6
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCCAGTT 	26
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCCAGT 	4058
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCCAG 	140
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCCA 	58
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCC 	16
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCCAGTTG 	1
-------------------------------------------------------------------------AGATCATCGTGAAAGCCAGT 	5


Overlaps with: MNEST038320
Overlaps with miRBase pre-miRNAs: cel-mir-82
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Caenorhabditis elegans GSM427332-5684 TGAGATCATCGTGAAAGCCAGT CGGTTTTCTCTGTGATCTACAGA down 4 1


Secondary structure

AGTGAACTCATGAAATAGGTTCTTTTAGCAACCGGTTTTCTCTGTGATCTACAGAATGACAGCTAATCGTCTGAGATCATCGTGAAAGCCAGTTGTTTTTATGAACTCTTATCAAGAAAATT
--------------------------------CGGTTTTCTCTGTGATCTACAGA 	9
--------------------------------CGGTTTTCTCTGTGATCTACA 	5
--------------------------------CGGTTTTCTCTGTGATCTAC 	1
---------------------------------------------------------------------TCTGAGATCATCGTGAAAGCCAGT 	2
----------------------------------------------------------------------CTGAGATCATCGTGAAAGCCAGT 	1
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCCAGTT 	78
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCCAGT 	16445
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCCAG 	509
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCCA 	116
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCC 	39
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCCAGTTG 	2
------------------------------------------------------------------------GAGATCATCGTGAAAGCCAGT 	13
------------------------------------------------------------------------GAGATCATCGTGAAAGCCAGTT 	1
-------------------------------------------------------------------------AGATCATCGTGAAAGCCAGT 	10
-------------------------------------------------------------------------AGATCATCGTGAAAGCCAG 	1


Overlaps with: MNEST038320
Overlaps with miRBase pre-miRNAs: cel-mir-82
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Caenorhabditis elegans GSM378784 TGAGATCATCGTGAAAGCCAGT CGGTTTTCTCTGTGATCTACAGA down 4 1


Secondary structure

AGTGAACTCATGAAATAGGTTCTTTTAGCAACCGGTTTTCTCTGTGATCTACAGAATGACAGCTAATCGTCTGAGATCATCGTGAAAGCCAGTTGTTTTTATGAACTCTTATCAAGAAAATT
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCCAGTTG 	1
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCCAGTT 	263
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCCAGT 	14586
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCCAG 	1623
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCC 	102
------------------------------------------------------------------------GAGATCATCGTGAAAGCCAGTT 	2
------------------------------------------------------------------------GAGATCATCGTGAAAGCCAGT 	13
------------------------------------------------------------------------GAGATCATCGTGAAAGCCAG 	1
--------------------------------------------------------------------------GATCATCGTGAAAGCCAGT 	4
---------------------------------------------------------------------------ATCATCGTGAAAGCCAGTTG 	1


Overlaps with: MNEST038320
Overlaps with miRBase pre-miRNAs: cel-mir-82
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Caenorhabditis elegans GSM427346-5695 TGAGATCATCGTGAAAGCCAGT CGGTTTTCTCTGTGATCTACAGA down 4 1


Secondary structure

AGTGAACTCATGAAATAGGTTCTTTTAGCAACCGGTTTTCTCTGTGATCTACAGAATGACAGCTAATCGTCTGAGATCATCGTGAAAGCCAGTTGTTTTTATGAACTCTTATCAAGAAAATT
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCCAGTT 	102
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCCAGT 	11011
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCCAG 	537
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCCA 	103
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCC 	30
------------------------------------------------------------------------GAGATCATCGTGAAAGCCAGTT 	5
-------------------------------------------------------------------------AGATCATCGTGAAAGCCAGT 	8
-------------------------------------------------------------------------AGATCATCGTGAAAGCCAG 	2
-------------------------------------------------------------------------AGATCATCGTGAAAGCCAGTTG 	1


Overlaps with: MNEST038320
Overlaps with miRBase pre-miRNAs: cel-mir-82
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Caenorhabditis elegans GSM427345-5693 TGAGATCATCGTGAAAGCCAGT CGGTTTTCTCTGTGATCTACAGA down 4 1


Secondary structure

AGTGAACTCATGAAATAGGTTCTTTTAGCAACCGGTTTTCTCTGTGATCTACAGAATGACAGCTAATCGTCTGAGATCATCGTGAAAGCCAGTTGTTTTTATGAACTCTTATCAAGAAAATT
---------------------------------------------------------------------TCTGAGATCATCGTGAAAGCCAGT 	1
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCCAGTT 	19
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCCAGT 	1807
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCCAG 	98
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCCA 	14
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCC 	5
------------------------------------------------------------------------GAGATCATCGTGAAAGCCAGTT 	2
-------------------------------------------------------------------------AGATCATCGTGAAAGCCAGT 	3


Overlaps with: MNEST038320
Overlaps with miRBase pre-miRNAs: cel-mir-82
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Caenorhabditis elegans GSM427297-5679 TGAGATCATCGTGAAAGCCAGT CGGTTTTCTCTGTGATCTACAGA down 4 1


Secondary structure

AGTGAACTCATGAAATAGGTTCTTTTAGCAACCGGTTTTCTCTGTGATCTACAGAATGACAGCTAATCGTCTGAGATCATCGTGAAAGCCAGTTGTTTTTATGAACTCTTATCAAGAAAATT
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCCAGT 	86
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCCAG 	4
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCCA 	1


Overlaps with: MNEST038320
Overlaps with miRBase pre-miRNAs: cel-mir-82
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Caenorhabditis elegans GSM297751-9445 TGAGATCATCGTGAAAGCCAGT CGGTTTTCTCTGTGATCTACAGA down 4 1


Secondary structure

AGTGAACTCATGAAATAGGTTCTTTTAGCAACCGGTTTTCTCTGTGATCTACAGAATGACAGCTAATCGTCTGAGATCATCGTGAAAGCCAGTTGTTTTTATGAACTCTTATCAAGAAAATT
--------------------------------CGGTTTTCTCTGTGATCTAC 	2
--------------------------------CGGTTTTCTCTGTGATCTACAG 	2
--------------------------------CGGTTTTCTCTGTGATCTACAGA 	26
--------------------------------CGGTTTTCTCTGTGATCTACA 	1
----------------------------------------------------------------------CTGAGATCATCGTGAAAGCCAGT 	1
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCCAGT 	25965
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCCAGTT 	221
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCCAG 	1685
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCC 	302
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCCA 	948
------------------------------------------------------------------------GAGATCATCGTGAAAGCCAGT 	9
------------------------------------------------------------------------GAGATCATCGTGAAAGCCA 	1
------------------------------------------------------------------------GAGATCATCGTGAAAGCCAG 	3
-------------------------------------------------------------------------AGATCATCGTGAAAGCCAG 	1
-------------------------------------------------------------------------AGATCATCGTGAAAGCCAGT 	4
--------------------------------------------------------------------------GATCATCGTGAAAGCCAGT 	10


Overlaps with: MNEST038320
Overlaps with miRBase pre-miRNAs: cel-mir-82
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Caenorhabditis elegans GSM297752-9446 TGAGATCATCGTGAAAGCCAGT CGGTTTTCTCTGTGATCTACAGA down 4 1


Secondary structure

AGTGAACTCATGAAATAGGTTCTTTTAGCAACCGGTTTTCTCTGTGATCTACAGAATGACAGCTAATCGTCTGAGATCATCGTGAAAGCCAGTTGTTTTTATGAACTCTTATCAAGAAAATT
--------------------------------CGGTTTTCTCTGTGATCTACAG 	2
--------------------------------CGGTTTTCTCTGTGATCTACAGA 	7
--------------------------------CGGTTTTCTCTGTGATCTACA 	6
----------------------------------------------------------------------CTGAGATCATCGTGAAAGCCAGT 	1
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCCAGTT 	208
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCCAGT 	24183
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCC 	351
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCCAG 	1465
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCCA 	845
------------------------------------------------------------------------GAGATCATCGTGAAAGCCAGTT 	1
------------------------------------------------------------------------GAGATCATCGTGAAAGCCAGT 	8
------------------------------------------------------------------------GAGATCATCGTGAAAGCCAG 	2
-------------------------------------------------------------------------AGATCATCGTGAAAGCCAGTTG 	1
-------------------------------------------------------------------------AGATCATCGTGAAAGCCAGT 	8
-------------------------------------------------------------------------AGATCATCGTGAAAGCCAG 	1
--------------------------------------------------------------------------GATCATCGTGAAAGCCAGT 	19
---------------------------------------------------------------------------ATCATCGTGAAAGCCAGTT 	4


Overlaps with: MNEST038320
Overlaps with miRBase pre-miRNAs: cel-mir-82
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Caenorhabditis elegans GSM427301-5681 TGAGATCATCGTGAAAGCCAGT CGGTTTTCTCTGTGATCTACAGA down 4 1


Secondary structure

AGTGAACTCATGAAATAGGTTCTTTTAGCAACCGGTTTTCTCTGTGATCTACAGAATGACAGCTAATCGTCTGAGATCATCGTGAAAGCCAGTTGTTTTTATGAACTCTTATCAAGAAAATT
-----------------------------------------------------------------------TGAGATCATCGTGAAAGCCAGT 	31


Overlaps with: MNEST038320
Overlaps with miRBase pre-miRNAs: cel-mir-82
HuntMi prediction: true miRNA