miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

miRNEST 2.0: an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TGAGATCATCGTGAAAGCTAGT

selected species: Caenorhabditis elegans

9 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Caenorhabditis elegans	GSM427344-5691	TGAGATCATCGTGAAAGCTAGT	CGGTTTTCACCGTGATCTGAGA	down	4	0

Secondary structure

CAGTGCCATCGTGCCCAACAGTCGGTTTTCACCGTGATCTGAGAGCAATCCAAAAATGCTTTTCTGAGATCATCGTGAAAGCTAGTTGTTGGTCTACGGGCTTTT
----------------------CGGTTTTCACCGTGATCTGAGA 	1
----------------------------------------------------------------TGAGATCATCGTGAAAGCTAGTT 	149
----------------------------------------------------------------TGAGATCATCGTGAAAGCTAGT 	11490
----------------------------------------------------------------TGAGATCATCGTGAAAGCTAG 	339
----------------------------------------------------------------TGAGATCATCGTGAAAGCTA 	59
----------------------------------------------------------------TGAGATCATCGTGAAAGCT 	7
-----------------------------------------------------------------GAGATCATCGTGAAAGCTAGT 	1
------------------------------------------------------------------AGATCATCGTGAAAGCTAGT 	2
-------------------------------------------------------------------GATCATCGTGAAAGCTAGT 	1

Overlaps with: MNEST038319
Overlaps with miRBase pre-miRNAs: cel-mir-81
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Caenorhabditis elegans	GSM427332-5684	TGAGATCATCGTGAAAGCTAGT	CGGTTTTCACCGTGATCTGAGA	down	4	0

Secondary structure

CAGTGCCATCGTGCCCAACAGTCGGTTTTCACCGTGATCTGAGAGCAATCCAAAAATGCTTTTCTGAGATCATCGTGAAAGCTAGTTGTTGGTCTACGGGCTTTT
----------------------CGGTTTTCACCGTGATCTGAGA 	76
----------------------CGGTTTTCACCGTGATCTGAG 	1
-------------------------------------------------------------TTCTGAGATCATCGTGAAAGCTAGT 	1
---------------------------------------------------------------CTGAGATCATCGTGAAAGCTAGT 	6
----------------------------------------------------------------TGAGATCATCGTGAAAGCTAGTT 	131
----------------------------------------------------------------TGAGATCATCGTGAAAGCTAGT 	17367
----------------------------------------------------------------TGAGATCATCGTGAAAGCTAG 	394
----------------------------------------------------------------TGAGATCATCGTGAAAGCTA 	49
----------------------------------------------------------------TGAGATCATCGTGAAAGCT 	18
-----------------------------------------------------------------GAGATCATCGTGAAAGCTAGT 	4
-----------------------------------------------------------------GAGATCATCGTGAAAGCTAGTT 	1
------------------------------------------------------------------AGATCATCGTGAAAGCTAGT 	12
------------------------------------------------------------------AGATCATCGTGAAAGCTAG 	1

Overlaps with: MNEST038319
Overlaps with miRBase pre-miRNAs: cel-mir-81
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Caenorhabditis elegans	GSM378784	TGAGATCATCGTGAAAGCTAGT	CGGTTTTCACCGTGATCTGAGA	down	4	0

Secondary structure

CAGTGCCATCGTGCCCAACAGTCGGTTTTCACCGTGATCTGAGAGCAATCCAAAAATGCTTTTCTGAGATCATCGTGAAAGCTAGTTGTTGGTCTACGGGCTTTT
----------------------------------------------------------------TGAGATCATCGTGAAAGCTAGTT 	219
----------------------------------------------------------------TGAGATCATCGTGAAAGCTAGT 	6544
----------------------------------------------------------------TGAGATCATCGTGAAAGCTAG 	320
----------------------------------------------------------------TGAGATCATCGTGAAAGCT 	27
-----------------------------------------------------------------GAGATCATCGTGAAAGCTAGT 	4
------------------------------------------------------------------AGATCATCGTGAAAGCTAGT 	1
-------------------------------------------------------------------GATCATCGTGAAAGCTAGT 	8

Overlaps with: MNEST038319
Overlaps with miRBase pre-miRNAs: cel-mir-81
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Caenorhabditis elegans	GSM427346-5695	TGAGATCATCGTGAAAGCTAGT	CGGTTTTCACCGTGATCTGAGA	down	4	0

Secondary structure

CAGTGCCATCGTGCCCAACAGTCGGTTTTCACCGTGATCTGAGAGCAATCCAAAAATGCTTTTCTGAGATCATCGTGAAAGCTAGTTGTTGGTCTACGGGCTTTT
----------------------CGGTTTTCACCGTGATCTGAGA 	1
----------------------------------------------------------------TGAGATCATCGTGAAAGCTAGTT 	284
----------------------------------------------------------------TGAGATCATCGTGAAAGCTAGT 	11121
----------------------------------------------------------------TGAGATCATCGTGAAAGCTAG 	355
----------------------------------------------------------------TGAGATCATCGTGAAAGCTA 	23
----------------------------------------------------------------TGAGATCATCGTGAAAGCT 	4
----------------------------------------------------------------TGAGATCATCGTGAAAGCTAGTTG 	1
-----------------------------------------------------------------GAGATCATCGTGAAAGCTAGT 	1
------------------------------------------------------------------AGATCATCGTGAAAGCTAGT 	2

Overlaps with: MNEST038319
Overlaps with miRBase pre-miRNAs: cel-mir-81
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Caenorhabditis elegans	GSM427345-5693	TGAGATCATCGTGAAAGCTAGT	CGGTTTTCACCGTGATCTGAGA	down	4	0

Secondary structure

CAGTGCCATCGTGCCCAACAGTCGGTTTTCACCGTGATCTGAGAGCAATCCAAAAATGCTTTTCTGAGATCATCGTGAAAGCTAGTTGTTGGTCTACGGGCTTTT
----------------------------------------------------------------TGAGATCATCGTGAAAGCTAGTT 	57
----------------------------------------------------------------TGAGATCATCGTGAAAGCTAGT 	2593
----------------------------------------------------------------TGAGATCATCGTGAAAGCTAG 	105
----------------------------------------------------------------TGAGATCATCGTGAAAGCTA 	3
----------------------------------------------------------------TGAGATCATCGTGAAAGCT 	2
------------------------------------------------------------------AGATCATCGTGAAAGCTAGT 	1

Overlaps with: MNEST038319
Overlaps with miRBase pre-miRNAs: cel-mir-81
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Caenorhabditis elegans	GSM427297-5679	TGAGATCATCGTGAAAGCTAGT	CGGTTTTCACCGTGATCTGAGA	down	4	0

Secondary structure

CAGTGCCATCGTGCCCAACAGTCGGTTTTCACCGTGATCTGAGAGCAATCCAAAAATGCTTTTCTGAGATCATCGTGAAAGCTAGTTGTTGGTCTACGGGCTTTT
----------------------------------------------------------------TGAGATCATCGTGAAAGCTAGTT 	5
----------------------------------------------------------------TGAGATCATCGTGAAAGCTAGT 	170
----------------------------------------------------------------TGAGATCATCGTGAAAGCTAG 	4
----------------------------------------------------------------TGAGATCATCGTGAAAGCTA 	1

Overlaps with: MNEST038319
Overlaps with miRBase pre-miRNAs: cel-mir-81
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Caenorhabditis elegans	GSM297751-9445	TGAGATCATCGTGAAAGCTAGT	CGGTTTTCACCGTGATCTGAGA	down	4	0

Secondary structure

CAGTGCCATCGTGCCCAACAGTCGGTTTTCACCGTGATCTGAGAGCAATCCAAAAATGCTTTTCTGAGATCATCGTGAAAGCTAGTTGTTGGTCTACGGGCTTTT
----------------------CGGTTTTCACCGTGATCTGAG 	6
----------------------CGGTTTTCACCGTGATCTGA 	2
----------------------CGGTTTTCACCGTGATCTGAGA 	34
-----------------------GGTTTTCACCGTGATCTGAGA 	1
---------------------------------------------------------------CTGAGATCATCGTGAAAGCTAGT 	1
----------------------------------------------------------------TGAGATCATCGTGAAAGCTAG 	884
----------------------------------------------------------------TGAGATCATCGTGAAAGCTAGTT 	581
----------------------------------------------------------------TGAGATCATCGTGAAAGCTA 	358
----------------------------------------------------------------TGAGATCATCGTGAAAGCT 	89
----------------------------------------------------------------TGAGATCATCGTGAAAGCTAGT 	34286
----------------------------------------------------------------TGAGATCATCGTGAAAGCTAGTTG 	1
-----------------------------------------------------------------GAGATCATCGTGAAAGCTAG 	2
-----------------------------------------------------------------GAGATCATCGTGAAAGCTA 	1
-----------------------------------------------------------------GAGATCATCGTGAAAGCTAGT 	10
------------------------------------------------------------------AGATCATCGTGAAAGCTAG 	2
------------------------------------------------------------------AGATCATCGTGAAAGCTAGT 	10
-------------------------------------------------------------------GATCATCGTGAAAGCTAGT 	8

Overlaps with: MNEST038319
Overlaps with miRBase pre-miRNAs: cel-mir-81
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Caenorhabditis elegans	GSM297752-9446	TGAGATCATCGTGAAAGCTAGT	CGGTTTTCACCGTGATCTGAGA	down	4	0

Secondary structure

CAGTGCCATCGTGCCCAACAGTCGGTTTTCACCGTGATCTGAGAGCAATCCAAAAATGCTTTTCTGAGATCATCGTGAAAGCTAGTTGTTGGTCTACGGGCTTTT
----------------------CGGTTTTCACCGTGATCTGAG 	2
----------------------CGGTTTTCACCGTGATCTGA 	1
----------------------CGGTTTTCACCGTGATCTGAGA 	16
--------------------------------------------GCAATCCAAAAATGCTTTTC 	2
---------------------------------------------------------------CTGAGATCATCGTGAAAGCTAGT 	1
----------------------------------------------------------------TGAGATCATCGTGAAAGCTAGTT 	543
----------------------------------------------------------------TGAGATCATCGTGAAAGCT 	95
----------------------------------------------------------------TGAGATCATCGTGAAAGCTAGT 	30080
----------------------------------------------------------------TGAGATCATCGTGAAAGCTAG 	807
----------------------------------------------------------------TGAGATCATCGTGAAAGCTA 	258
-----------------------------------------------------------------GAGATCATCGTGAAAGCTAGTT 	1
-----------------------------------------------------------------GAGATCATCGTGAAAGCTAGT 	5
------------------------------------------------------------------AGATCATCGTGAAAGCTAGT 	5
-------------------------------------------------------------------GATCATCGTGAAAGCTAGT 	20
--------------------------------------------------------------------ATCATCGTGAAAGCTAGTT 	1

Overlaps with: MNEST038319
Overlaps with miRBase pre-miRNAs: cel-mir-81
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Caenorhabditis elegans	GSM427301-5681	TGAGATCATCGTGAAAGCTAGT	CGGTTTTCACCGTGATCTGAGA	down	4	0

Secondary structure

CAGTGCCATCGTGCCCAACAGTCGGTTTTCACCGTGATCTGAGAGCAATCCAAAAATGCTTTTCTGAGATCATCGTGAAAGCTAGTTGTTGGTCTACGGGCTTTT
----------------------------------------------------------------TGAGATCATCGTGAAAGCTAGT 	81
----------------------------------------------------------------TGAGATCATCGTGAAAGCTAGTT 	2
----------------------------------------------------------------TGAGATCATCGTGAAAGCTAG 	2

Overlaps with: MNEST038319
Overlaps with miRBase pre-miRNAs: cel-mir-81
HuntMi prediction: true miRNA