miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGAGATCGTTCAGTACGGCAAT

selected species: Caenorhabditis elegans



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Caenorhabditis elegans GSM297751-9445 TGAGATCGTTCAGTACGGCAAT TGCCCTACTCTTCGCATCTCATC down 4 1


Secondary structure

CGTCATATCCATTGCCCTACTCTTCGCATCTCATCACTTCGTCCAATACCATAGGGATGAGATCGTTCAGTACGGCAATGGACTGAGC
------------TGCCCTACTCTTCGCATCTCAT 	4
------------TGCCCTACTCTTCGCATCTCATC 	25
-------------GCCCTACTCTTCGCATCTCATC 	9
-------------GCCCTACTCTTCGCATCTCAT 	19
---------------CCTACTCTTCGCATCTCATCACT 	3
-----------------------------------ACTTCGTCCAATACCATAGGGA 	5
-----------------------------------ACTTCGTCCAATACCATAGGG 	2
-----------------------------------ACTTCGTCCAATACCATAG 	3
-----------------------------------ACTTCGTCCAATACCATAGG 	9
--------------------------------------------------------ATGAGATCGTTCAGTACGGCA 	2
--------------------------------------------------------ATGAGATCGTTCAGTACGGCAAT 	5
--------------------------------------------------------ATGAGATCGTTCAGTACGGCAA 	21
---------------------------------------------------------TGAGATCGTTCAGTACGGC 	231
---------------------------------------------------------TGAGATCGTTCAGTACGGCAA 	95462
---------------------------------------------------------TGAGATCGTTCAGTACGGCAATG 	31
---------------------------------------------------------TGAGATCGTTCAGTACGGCAAT 	123916
---------------------------------------------------------TGAGATCGTTCAGTACGGCA 	1189
----------------------------------------------------------GAGATCGTTCAGTACGGCA 	7
----------------------------------------------------------GAGATCGTTCAGTACGGCAA 	47
----------------------------------------------------------GAGATCGTTCAGTACGGCAAT 	36
-----------------------------------------------------------AGATCGTTCAGTACGGCAAT 	12
-----------------------------------------------------------AGATCGTTCAGTACGGCAA 	15
------------------------------------------------------------GATCGTTCAGTACGGCAAT 	30


Overlaps with: MNEST038296
Overlaps with miRBase pre-miRNAs: cel-mir-58
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Caenorhabditis elegans GSM297752-9446 TGAGATCGTTCAGTACGGCAAT TGCCCTACTCTTCGCATCTCATC down 4 1


Secondary structure

CGTCATATCCATTGCCCTACTCTTCGCATCTCATCACTTCGTCCAATACCATAGGGATGAGATCGTTCAGTACGGCAATGGACTGAGC
------------TGCCCTACTCTTCGCATCTCAT 	11
------------TGCCCTACTCTTCGCATCTC 	2
------------TGCCCTACTCTTCGCATCTCA 	1
------------TGCCCTACTCTTCGCATCTCATC 	35
-------------GCCCTACTCTTCGCATCTCATC 	21
-------------GCCCTACTCTTCGCATCTCAT 	5
---------------CCTACTCTTCGCATCTCATCACTT 	2
---------------CCTACTCTTCGCATCTCATCACT 	1
-----------------------------------ACTTCGTCCAATACCATAGGGA 	3
-----------------------------------ACTTCGTCCAATACCATAGG 	3
-----------------------------------ACTTCGTCCAATACCATAGGG 	3
-----------------------------------ACTTCGTCCAATACCATAG 	4
------------------------------------------------------GGATGAGATCGTTCAGTACGGCA 	1
------------------------------------------------------GGATGAGATCGTTCAGTACG 	1
-------------------------------------------------------GATGAGATCGTTCAGTACGGCAAT 	1
-------------------------------------------------------GATGAGATCGTTCAGTACGGCAA 	1
--------------------------------------------------------ATGAGATCGTTCAGTACGGCA 	2
--------------------------------------------------------ATGAGATCGTTCAGTACGGCAAT 	8
--------------------------------------------------------ATGAGATCGTTCAGTACGGCAA 	10
---------------------------------------------------------TGAGATCGTTCAGTACGGC 	227
---------------------------------------------------------TGAGATCGTTCAGTACGGCAA 	83628
---------------------------------------------------------TGAGATCGTTCAGTACGGCAAT 	102994
---------------------------------------------------------TGAGATCGTTCAGTACGGCAATG 	37
---------------------------------------------------------TGAGATCGTTCAGTACGGCA 	1079
----------------------------------------------------------GAGATCGTTCAGTACGGCAAT 	23
----------------------------------------------------------GAGATCGTTCAGTACGGCAA 	13
-----------------------------------------------------------AGATCGTTCAGTACGGCAAT 	4
-----------------------------------------------------------AGATCGTTCAGTACGGCAA 	2
------------------------------------------------------------GATCGTTCAGTACGGCAAT 	50


Overlaps with: MNEST038296
Overlaps with miRBase pre-miRNAs: cel-mir-58
HuntMi prediction: true miRNA