miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TGAGATGAAGCACTGTAGCTC

selected species: Danio rerio



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540642 TGAGATGAAGCACTGTAGCTC GGTGCAGTGCTGCATCTCTGG down 2 2


Secondary structure

AGTCCGGCCCGATCTACAGTCGTCTGGCCCGCGGTGCAGTGCTGCATCTCTGGTCAACTGGGAGTCTGAGATGAAGCACTGTAGCTCGGGAGGACAACACTGTCAGCTCATACAAA
-----------ATCTACAGTCGTCTGGCCCGC 	1
------------------------------------------------------------------TGAGATGAAGCACTGTAGCTC 	37
------------------------------------------------------------------TGAGATGAAGCACTGTAGCT 	2

Overlaps with: MNEST034314 MNEST034315
Overlaps with miRBase pre-miRNAs: dre-mir-143-2 dre-mir-143-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540643 TGAGATGAAGCACTGTAGCTC GGTGCAGTGCTGCATCTCTGG down 2 2


Secondary structure

AGTCCGGCCCGATCTACAGTCGTCTGGCCCGCGGTGCAGTGCTGCATCTCTGGTCAACTGGGAGTCTGAGATGAAGCACTGTAGCTCGGGAGGACAACACTGTCAGCTCATACAAA
------------TCTACAGTCGTCTGGCCCGC 	1
-----------------------------------------------------------------CTGAGATGAAGCACTGTAGCT 	1
-----------------------------------------------------------------CTGAGATGAAGCACTGTAGCTC 	5
------------------------------------------------------------------TGAGATGAAGCACTGTAGCTCG 	1
------------------------------------------------------------------TGAGATGAAGCACTGTAGC 	1
------------------------------------------------------------------TGAGATGAAGCACTGTAGCTC 	692
------------------------------------------------------------------TGAGATGAAGCACTGTAGCT 	74

Overlaps with: MNEST034314 MNEST034315
Overlaps with miRBase pre-miRNAs: dre-mir-143-2 dre-mir-143-1
HuntMi prediction: true miRNA