miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TGAGCCAAGGATGACTTGCCG

selected species: Arabidopsis thaliana

19 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Arabidopsis thaliana	GSM304282	TGAGCCAAGGATGACTTGCCG	GCAAGTTGACTTTGGCTCTGT	up	2	0

Secondary structure

CACTAATTAATTGTATCATAGAGTCTTGCATGGAAAAATAGAAAATGAGATTGAGCCAAGGATGACTTGCCGATTTTCTCAACGAATCTTACTGATTATGGTATCCGGCAAGTTGACTTTGGCTCTGTTTCCTTCCCTTCTTTTCGATGTCAAACTCTAGATACCTAACCACATAT
---------------------------------------------------TGAGCCAAGGATGACTTGCCG 	5
-----------------------------------------------------AGCCAAGGATGACTTGCCGA 	1
-----------------------------------------------------------------------------------------------------------GCAAGTTGACTTTGGCTCTGT 	2

Overlaps with: MNEST040049 MNEST046964
Overlaps with miRBase pre-miRNAs: ath-MIR169e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Arabidopsis thaliana	GSM415786-5994	TGAGCCAAGGATGACTTGCCG	GCAAGTTGACCTTGGCTCTGC	up	2	0

Secondary structure

GGGTCTTGCATGAAGGAATAACGAATGGAATTGAGCCAAGGATGACTTGCCGGTTTAAACCCAACCGGTTTATGACCATTGATTTGGTCTCATTCACAATCTGTTGATTCGTGTCTGGCAAGTTGACCTTGGCTCTGCTTCGTTCTCTATTCTTCCATGTTAGATT
----------TGAAGGAATAACGAATGGAAT 	2
-------------------------------TGAGCCAAGGATGACTTGCCG 	121
--------------------------------GAGCCAAGGATGACTTGCCGG 	2
----------------------------------GCCAAGGATGACTTGCCGGTT 	1
--------------------------------------------------------------------------------------------------------------------GGCAAGTTGACCTTGGCTCTG 	1
---------------------------------------------------------------------------------------------------------------------GCAAGTTGACCTTGGCTCTGCT 	2
---------------------------------------------------------------------------------------------------------------------GCAAGTTGACCTTGGCTCTGC 	4
---------------------------------------------------------------------------------------------------------------------GCAAGTTGACCTTGGCTCTG 	5
---------------------------------------------------------------------------------------------------------------------GCAAGTTGACCTTGGCTCT 	2

Overlaps with: MNEST040050 MNEST046965
Overlaps with miRBase pre-miRNAs: ath-MIR169f
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Arabidopsis thaliana	GSM415786-5994	TGAGCCAAGGATGACTTGCCG	GCAAGTTGACTTTGGCTCTGT	up	2	0

Secondary structure

CACTAATTAATTGTATCATAGAGTCTTGCATGGAAAAATAGAAAATGAGATTGAGCCAAGGATGACTTGCCGATTTTCTCAACGAATCTTACTGATTATGGTATCCGGCAAGTTGACTTTGGCTCTGTTTCCTTCCCTTCTTTTCGATGTCAAACTCTAGATACCTAACCACATAT
---------------------------------------------TGAGATTGAGCCAAGGATGACT 	1
---------------------------------------------------TGAGCCAAGGATGACTTGCCG 	121
-----------------------------------------------------AGCCAAGGATGACTTGCCGA 	6
--------------------------------------------------------------------------------------------------------CCGGCAAGTTGACTTTGGCTC 	1
----------------------------------------------------------------------------------------------------------GGCAAGTTGACTTTGGCTCTGT 	1
----------------------------------------------------------------------------------------------------------GGCAAGTTGACTTTGGCTCTG 	2
-----------------------------------------------------------------------------------------------------------GCAAGTTGACTTTGGCTCTGTT 	3
-----------------------------------------------------------------------------------------------------------GCAAGTTGACTTTGGCTCTGT 	7
-----------------------------------------------------------------------------------------------------------GCAAGTTGACTTTGGCTCT 	1

Overlaps with: MNEST040049 MNEST046964
Overlaps with miRBase pre-miRNAs: ath-MIR169e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Arabidopsis thaliana	GSM424847-4989	TGAGCCAAGGATGACTTGCCG	GCAAGTTGACCTTGGCTCTGT	up	2	0

Secondary structure

GAGTCTCTAGTTGTATCAGAGGGTCTTGCATGGAAGAATAGAGAATGAGGTTGAGCCAAGGATGACTTGCCGGGTTTTTTTACCAATGAATCTAATTAACTGATTCTGGTGTCCGGCAAGTTGACCTTGGCTCTGTTTCCTTCTCTTCTTTTGGATGTCAGACTCCAAGATATCTATCATCATG
---------------------------------------------------TGAGCCAAGGATGACTTGCCG 	92
-----------------------------------------------------AGCCAAGGATGACTTGCCGG 	1
-------------------------------------------------------------------------------------------------------------------GCAAGTTGACCTTGGCTCTGT 	2

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Arabidopsis thaliana	GSM424847-4989	TGAGCCAAGGATGACTTGCCG	GCAAGTTGACCTTGGCTCTGC	up	2	0

Secondary structure

GGGTCTTGCATGAAGGAATAACGAATGGAATTGAGCCAAGGATGACTTGCCGGTTTAAACCCAACCGGTTTATGACCATTGATTTGGTCTCATTCACAATCTGTTGATTCGTGTCTGGCAAGTTGACCTTGGCTCTGCTTCGTTCTCTATTCTTCCATGTTAGATT
-------------------------------TGAGCCAAGGATGACTTGCCG 	92
---------------------------------AGCCAAGGATGACTTGCCGGTT 	1
---------------------------------AGCCAAGGATGACTTGCCGG 	1
---------------------------------------------------------------------------------------------------------------------GCAAGTTGACCTTGGCTCTGC 	4

Overlaps with: MNEST040050 MNEST046965
Overlaps with miRBase pre-miRNAs: ath-MIR169f
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Arabidopsis thaliana	GSM424847-4989	TGAGCCAAGGATGACTTGCCG	GCAAGTTGACTTTGGCTCTGT	up	2	0

Secondary structure

CACTAATTAATTGTATCATAGAGTCTTGCATGGAAAAATAGAAAATGAGATTGAGCCAAGGATGACTTGCCGATTTTCTCAACGAATCTTACTGATTATGGTATCCGGCAAGTTGACTTTGGCTCTGTTTCCTTCCCTTCTTTTCGATGTCAAACTCTAGATACCTAACCACATAT
---------------------------------------------------TGAGCCAAGGATGACTTGCCG 	92

Overlaps with: MNEST040049 MNEST046964
Overlaps with miRBase pre-miRNAs: ath-MIR169e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Arabidopsis thaliana	GSM424847-4989	TGAGCCAAGGATGACTTGCCG	GCAAGTTGACCTTGGCTCTGT	up	2	0

Secondary structure

AGTCACTAATTGTATCATAGAGTCTTGCATGGAAAAATTAAAGAATGAGATTGAGCCAAGGATGACTTGCCGATGTTATCAACAAATCTTAACTGATTTTGGTGTCCGGCAAGTTGACCTTGGCTCTGTTTCCTTCTTTTCTTTTCAATGTCAAACTCTAGATATCTCTATCCGTTA
---------------------------------------AAAGAATGAGATTGAGCCAAG 	1
---------------------------------------------------TGAGCCAAGGATGACTTGCCG 	92
------------------------------------------------------------------------------------------------------------GCAAGTTGACCTTGGCTCTGT 	2

Overlaps with: MNEST040048 MNEST046963
Overlaps with miRBase pre-miRNAs: ath-MIR169d
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Arabidopsis thaliana	GSM415785	TGAGCCAAGGATGACTTGCCG	GCAAGTTGACCTTGGCTCTGT	up	2	0

Secondary structure

GAGTCTCTAGTTGTATCAGAGGGTCTTGCATGGAAGAATAGAGAATGAGGTTGAGCCAAGGATGACTTGCCGGGTTTTTTTACCAATGAATCTAATTAACTGATTCTGGTGTCCGGCAAGTTGACCTTGGCTCTGTTTCCTTCTCTTCTTTTGGATGTCAGACTCCAAGATATCTATCATCATG
---------------------------------------------------TGAGCCAAGGATGACTTGCCG 	118
---------------------------------------------------TGAGCCAAGGATGACTTGCC 	1
-------------------------------------------------------------------------------------------------------------------GCAAGTTGACCTTGGCTCTGT 	2
-------------------------------------------------------------------------------------------------------------------GCAAGTTGACCTTGGCTCTG 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Arabidopsis thaliana	GSM415785	TGAGCCAAGGATGACTTGCCG	GCAAGTTGACCTTGGCTCTGC	up	2	0

Secondary structure

GGGTCTTGCATGAAGGAATAACGAATGGAATTGAGCCAAGGATGACTTGCCGGTTTAAACCCAACCGGTTTATGACCATTGATTTGGTCTCATTCACAATCTGTTGATTCGTGTCTGGCAAGTTGACCTTGGCTCTGCTTCGTTCTCTATTCTTCCATGTTAGATT
-------------------------------TGAGCCAAGGATGACTTGCCG 	118
-------------------------------TGAGCCAAGGATGACTTGCC 	1
---------------------------------------------------------------------------------------------------------------------GCAAGTTGACCTTGGCTCTG 	1

Overlaps with: MNEST040050 MNEST046965
Overlaps with miRBase pre-miRNAs: ath-MIR169f
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Arabidopsis thaliana	GSM415785	TGAGCCAAGGATGACTTGCCG	GCAAGTTGACTTTGGCTCTGT	up	2	0

Secondary structure

CACTAATTAATTGTATCATAGAGTCTTGCATGGAAAAATAGAAAATGAGATTGAGCCAAGGATGACTTGCCGATTTTCTCAACGAATCTTACTGATTATGGTATCCGGCAAGTTGACTTTGGCTCTGTTTCCTTCCCTTCTTTTCGATGTCAAACTCTAGATACCTAACCACATAT
---------------------------------------------------TGAGCCAAGGATGACTTGCCG 	118
---------------------------------------------------TGAGCCAAGGATGACTTGCC 	1
-----------------------------------------------------------------------------------------------------------GCAAGTTGACTTTGGCTCTG 	1

Overlaps with: MNEST040049 MNEST046964
Overlaps with miRBase pre-miRNAs: ath-MIR169e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Arabidopsis thaliana	GSM415785	TGAGCCAAGGATGACTTGCCG	GCAAGTTGACCTTGGCTCTGT	up	2	0

Secondary structure

AGTCACTAATTGTATCATAGAGTCTTGCATGGAAAAATTAAAGAATGAGATTGAGCCAAGGATGACTTGCCGATGTTATCAACAAATCTTAACTGATTTTGGTGTCCGGCAAGTTGACCTTGGCTCTGTTTCCTTCTTTTCTTTTCAATGTCAAACTCTAGATATCTCTATCCGTTA
---------------------------------------------------TGAGCCAAGGATGACTTGCCG 	118
---------------------------------------------------TGAGCCAAGGATGACTTGCC 	1
------------------------------------------------------------------------------------------------------------GCAAGTTGACCTTGGCTCTGT 	2
------------------------------------------------------------------------------------------------------------GCAAGTTGACCTTGGCTCTG 	1

Overlaps with: MNEST040048 MNEST046963
Overlaps with miRBase pre-miRNAs: ath-MIR169d
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Arabidopsis thaliana	GSM424848-4990	TGAGCCAAGGATGACTTGCCG	GCAAGTTGACCTTGGCTCTGT	up	2	0

Secondary structure

GAGTCTCTAGTTGTATCAGAGGGTCTTGCATGGAAGAATAGAGAATGAGGTTGAGCCAAGGATGACTTGCCGGGTTTTTTTACCAATGAATCTAATTAACTGATTCTGGTGTCCGGCAAGTTGACCTTGGCTCTGTTTCCTTCTCTTCTTTTGGATGTCAGACTCCAAGATATCTATCATCATG
---------------------------------------------------TGAGCCAAGGATGACTTGCCG 	61
-------------------------------------------------------------------------------------------------------------------GCAAGTTGACCTTGGCTCTGT 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Arabidopsis thaliana	GSM424848-4990	TGAGCCAAGGATGACTTGCCG	GCAAGTTGACCTTGGCTCTGC	up	2	0

Secondary structure

GGGTCTTGCATGAAGGAATAACGAATGGAATTGAGCCAAGGATGACTTGCCGGTTTAAACCCAACCGGTTTATGACCATTGATTTGGTCTCATTCACAATCTGTTGATTCGTGTCTGGCAAGTTGACCTTGGCTCTGCTTCGTTCTCTATTCTTCCATGTTAGATT
-------------------------------TGAGCCAAGGATGACTTGCCG 	61

Overlaps with: MNEST040050 MNEST046965
Overlaps with miRBase pre-miRNAs: ath-MIR169f
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
14	Arabidopsis thaliana	GSM424848-4990	TGAGCCAAGGATGACTTGCCG	GCAAGTTGACTTTGGCTCTGT	up	2	0

Secondary structure

CACTAATTAATTGTATCATAGAGTCTTGCATGGAAAAATAGAAAATGAGATTGAGCCAAGGATGACTTGCCGATTTTCTCAACGAATCTTACTGATTATGGTATCCGGCAAGTTGACTTTGGCTCTGTTTCCTTCCCTTCTTTTCGATGTCAAACTCTAGATACCTAACCACATAT
---------------------------------------------------TGAGCCAAGGATGACTTGCCG 	61
-----------------------------------------------------------------------------------------------------------GCAAGTTGACTTTGGCTCTGTT 	1

Overlaps with: MNEST040049 MNEST046964
Overlaps with miRBase pre-miRNAs: ath-MIR169e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
15	Arabidopsis thaliana	GSM424848-4990	TGAGCCAAGGATGACTTGCCG	GCAAGTTGACCTTGGCTCTGT	up	2	0

Secondary structure

AGTCACTAATTGTATCATAGAGTCTTGCATGGAAAAATTAAAGAATGAGATTGAGCCAAGGATGACTTGCCGATGTTATCAACAAATCTTAACTGATTTTGGTGTCCGGCAAGTTGACCTTGGCTCTGTTTCCTTCTTTTCTTTTCAATGTCAAACTCTAGATATCTCTATCCGTTA
---------------------------------------------------TGAGCCAAGGATGACTTGCCG 	61
------------------------------------------------------------------------------------------------------------GCAAGTTGACCTTGGCTCTGT 	1

Overlaps with: MNEST040048 MNEST046963
Overlaps with miRBase pre-miRNAs: ath-MIR169d
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
16	Arabidopsis thaliana	GSM277608	TGAGCCAAGGATGACTTGCCG	GCAAGTTGACCTTGGCTCTGT	up	2	0

Secondary structure

GAGTCTCTAGTTGTATCAGAGGGTCTTGCATGGAAGAATAGAGAATGAGGTTGAGCCAAGGATGACTTGCCGGGTTTTTTTACCAATGAATCTAATTAACTGATTCTGGTGTCCGGCAAGTTGACCTTGGCTCTGTTTCCTTCTCTTCTTTTGGATGTCAGACTCCAAGATATCTATCATCATG
---------------------------------------------------TGAGCCAAGGATGACTTGCCG 	584
----------------------------------------------------GAGCCAAGGATGACTTGCCG 	9
-----------------------------------------------------AGCCAAGGATGACTTGCCG 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
17	Arabidopsis thaliana	GSM277608	TGAGCCAAGGATGACTTGCCG	GCAAGTTGACCTTGGCTCTGC	up	2	0

Secondary structure

GGGTCTTGCATGAAGGAATAACGAATGGAATTGAGCCAAGGATGACTTGCCGGTTTAAACCCAACCGGTTTATGACCATTGATTTGGTCTCATTCACAATCTGTTGATTCGTGTCTGGCAAGTTGACCTTGGCTCTGCTTCGTTCTCTATTCTTCCATGTTAGATT
-------------------------------TGAGCCAAGGATGACTTGCCG 	584
--------------------------------GAGCCAAGGATGACTTGCCG 	9
---------------------------------AGCCAAGGATGACTTGCCG 	1

Overlaps with: MNEST040050 MNEST046965
Overlaps with miRBase pre-miRNAs: ath-MIR169f
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
18	Arabidopsis thaliana	GSM277608	TGAGCCAAGGATGACTTGCCG	GCAAGTTGACTTTGGCTCTGT	up	2	0

Secondary structure

CACTAATTAATTGTATCATAGAGTCTTGCATGGAAAAATAGAAAATGAGATTGAGCCAAGGATGACTTGCCGATTTTCTCAACGAATCTTACTGATTATGGTATCCGGCAAGTTGACTTTGGCTCTGTTTCCTTCCCTTCTTTTCGATGTCAAACTCTAGATACCTAACCACATAT
---------------------------------------------------TGAGCCAAGGATGACTTGCCG 	584
----------------------------------------------------GAGCCAAGGATGACTTGCCG 	9
-----------------------------------------------------AGCCAAGGATGACTTGCCG 	1
-----------------------------------------------------AGCCAAGGATGACTTGCCGA 	1
-----------------------------------------------------------------------------------------------------------GCAAGTTGACTTTGGCTCTGT 	1

Overlaps with: MNEST040049 MNEST046964
Overlaps with miRBase pre-miRNAs: ath-MIR169e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
19	Arabidopsis thaliana	GSM277608	TGAGCCAAGGATGACTTGCCG	GCAAGTTGACCTTGGCTCTGT	up	2	0

Secondary structure

AGTCACTAATTGTATCATAGAGTCTTGCATGGAAAAATTAAAGAATGAGATTGAGCCAAGGATGACTTGCCGATGTTATCAACAAATCTTAACTGATTTTGGTGTCCGGCAAGTTGACCTTGGCTCTGTTTCCTTCTTTTCTTTTCAATGTCAAACTCTAGATATCTCTATCCGTTA
---------------------------------------------------TGAGCCAAGGATGACTTGCCG 	584
----------------------------------------------------GAGCCAAGGATGACTTGCCG 	9
-----------------------------------------------------AGCCAAGGATGACTTGCCG 	1
-----------------------------------------------------AGCCAAGGATGACTTGCCGA 	1

Overlaps with: MNEST040048 MNEST046963
Overlaps with miRBase pre-miRNAs: ath-MIR169d
HuntMi prediction: true miRNA