miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGAGCCGCGCCAATATCACAT

selected species: Physcomitrella patens



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM115097 TGAGCCGCGCCAATATCACAT GTGATATTGGTGGCGCTCAAT down 2 0


Secondary structure

TTCTTTAGGCATGTGATATTGGTGGCGCTCAATCAGATGACCATGCCTGTGATGCTGGCGTTGCCATCAGATTGAGCCGCGCCAATATCACATCCTTACTTC
------------GTGATATTGGTGGCGCTCAAT 	7
-------------TGATATTGGTGGCGCTCAAT 	1
-------------TGATATTGGTGGCGCTCAATC 	48
-----------------------------------------------------------------------TTGAGCCGCGCCAATATCAC 	1
-----------------------------------------------------------------------TTGAGCCGCGCCAATATCACA 	46
------------------------------------------------------------------------TGAGCCGCGCCAATATCACATC 	15
------------------------------------------------------------------------TGAGCCGCGCCAATATCACAT 	87
------------------------------------------------------------------------TGAGCCGCGCCAATATCACA 	14
------------------------------------------------------------------------TGAGCCGCGCCAATATCAC 	1


Overlaps with: MNEST039478 MNEST051382
Overlaps with miRBase pre-miRNAs: ppt-MIR171a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM115097 TGAGCCGCGCCAATATCACAT GTGTTATTGGGCCCGCTCAAT down 2 2


Secondary structure

TTTTGTCTGGAAGGGAAGTATTCTTGAGGCATGTGTTATTGGGCCCGCTCAATCAGATGTCTTTTCCAGCAACGGCTGGTATTGTCCTCAGATTGAGCCGCGCCAATATCACATCCTTCCTTGATTGCTTCTGTTTTCTCAAC
---------------------------------TGTTATTGGGCCCGCTCAATC 	2
--------------------------------------------------------------------------------------------TTGAGCCGCGCCAATATCAC 	1
--------------------------------------------------------------------------------------------TTGAGCCGCGCCAATATCACA 	46
---------------------------------------------------------------------------------------------TGAGCCGCGCCAATATCACATC 	15
---------------------------------------------------------------------------------------------TGAGCCGCGCCAATATCACAT 	87
---------------------------------------------------------------------------------------------TGAGCCGCGCCAATATCACA 	14
---------------------------------------------------------------------------------------------TGAGCCGCGCCAATATCAC 	1


Overlaps with: MNEST039479 MNEST051383
Overlaps with miRBase pre-miRNAs: ppt-MIR171b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM115095 TGAGCCGCGCCAATATCACAT GTGATATTGGTGGCGCTCAAT down 2 0


Secondary structure

TTCTTTAGGCATGTGATATTGGTGGCGCTCAATCAGATGACCATGCCTGTGATGCTGGCGTTGCCATCAGATTGAGCCGCGCCAATATCACATCCTTACTTC
------------GTGATATTGGTGGCGCTCAAT 	2
-------------TGATATTGGTGGCGCTCAATC 	16
-----------------------------------------------------------------------TTGAGCCGCGCCAATATCACA 	29
------------------------------------------------------------------------TGAGCCGCGCCAATATCACATC 	2
------------------------------------------------------------------------TGAGCCGCGCCAATATCACAT 	37
------------------------------------------------------------------------TGAGCCGCGCCAATATCACA 	2
------------------------------------------------------------------------TGAGCCGCGCCAATATCAC 	1


Overlaps with: MNEST039478 MNEST051382
Overlaps with miRBase pre-miRNAs: ppt-MIR171a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Physcomitrella patens GSM115095 TGAGCCGCGCCAATATCACAT GTGTTATTGGGCCCGCTCAAT down 2 2


Secondary structure

TTTTGTCTGGAAGGGAAGTATTCTTGAGGCATGTGTTATTGGGCCCGCTCAATCAGATGTCTTTTCCAGCAACGGCTGGTATTGTCCTCAGATTGAGCCGCGCCAATATCACATCCTTCCTTGATTGCTTCTGTTTTCTCAAC
--------------------------------------------------------------------------------------------TTGAGCCGCGCCAATATCACA 	29
---------------------------------------------------------------------------------------------TGAGCCGCGCCAATATCACATC 	2
---------------------------------------------------------------------------------------------TGAGCCGCGCCAATATCACAT 	37
---------------------------------------------------------------------------------------------TGAGCCGCGCCAATATCACA 	2
---------------------------------------------------------------------------------------------TGAGCCGCGCCAATATCAC 	1


Overlaps with: MNEST039479 MNEST051383
Overlaps with miRBase pre-miRNAs: ppt-MIR171b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Physcomitrella patens GSM115096 TGAGCCGCGCCAATATCACAT GTGATATTGGTGGCGCTCAAT down 2 0


Secondary structure

TTCTTTAGGCATGTGATATTGGTGGCGCTCAATCAGATGACCATGCCTGTGATGCTGGCGTTGCCATCAGATTGAGCCGCGCCAATATCACATCCTTACTTC
------------GTGATATTGGTGGCGCTCAAT 	14
-------------TGATATTGGTGGCGCTCAAT 	4
-------------TGATATTGGTGGCGCTCAATC 	24
---------------ATATTGGTGGCGCTCAATC 	1
-----------------------------------------------------------------------TTGAGCCGCGCCAATATCACA 	16
------------------------------------------------------------------------TGAGCCGCGCCAATATCACAT 	40
------------------------------------------------------------------------TGAGCCGCGCCAATATCACA 	4
------------------------------------------------------------------------TGAGCCGCGCCAATATCAC 	2
------------------------------------------------------------------------TGAGCCGCGCCAATATCACATC 	1


Overlaps with: MNEST039478 MNEST051382
Overlaps with miRBase pre-miRNAs: ppt-MIR171a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Physcomitrella patens GSM115096 TGAGCCGCGCCAATATCACAT GTGTTATTGGGCCCGCTCAAT down 2 2


Secondary structure

TTTTGTCTGGAAGGGAAGTATTCTTGAGGCATGTGTTATTGGGCCCGCTCAATCAGATGTCTTTTCCAGCAACGGCTGGTATTGTCCTCAGATTGAGCCGCGCCAATATCACATCCTTCCTTGATTGCTTCTGTTTTCTCAAC
--------------------------------------------------------------------------------------------TTGAGCCGCGCCAATATCACA 	16
---------------------------------------------------------------------------------------------TGAGCCGCGCCAATATCACAT 	40
---------------------------------------------------------------------------------------------TGAGCCGCGCCAATATCACA 	4
---------------------------------------------------------------------------------------------TGAGCCGCGCCAATATCAC 	2
---------------------------------------------------------------------------------------------TGAGCCGCGCCAATATCACATC 	1


Overlaps with: MNEST039479 MNEST051383
Overlaps with miRBase pre-miRNAs: ppt-MIR171b
HuntMi prediction: true miRNA