miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGAGCCTCTGTGGTAGCCCTCA

selected species: Arabidopsis thaliana



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Arabidopsis thaliana GSM304282 TGAGCCTCTGTGGTAGCCCTCA AGGGCTCCTCAGGTGTTCATG up 2 1


Secondary structure

ACTGATCATCTAAATTCGTCATGAGCCTCTGTGGTAGCCCTCACAATGATCTCAATAGAGTGCATGCCACGATCTTGTAAAGACGTAGATGAGGGCTCCTCAGGTGTTCATGTCGAATGTTAGATGATGT
---------------------TGAGCCTCTGTGGTAGCCCTCA 	13
---------------------TGAGCCTCTGTGGTAGCCCTC 	2
-------------------------------------------------------------------------------------------AGGGCTCCTCAGGTGTTCATG 	1
----------------------------------------------------------------------------------------------------------TTCATGTCGAATGTTAGATGA 	2

Overlaps with: MNEST040124 MNEST047045
Overlaps with miRBase pre-miRNAs: ath-MIR771
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Arabidopsis thaliana GSM304285 TGAGCCTCTGTGGTAGCCCTCA AGGGCTCCTCAGGTGTTCATG up 2 1


Secondary structure

ACTGATCATCTAAATTCGTCATGAGCCTCTGTGGTAGCCCTCACAATGATCTCAATAGAGTGCATGCCACGATCTTGTAAAGACGTAGATGAGGGCTCCTCAGGTGTTCATGTCGAATGTTAGATGATGT
---------------------TGAGCCTCTGTGGTAGCCCTCA 	5

Overlaps with: MNEST040124 MNEST047045
Overlaps with miRBase pre-miRNAs: ath-MIR771
HuntMi prediction: true miRNA