miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGAGGTAGGAGGTTGTATAGTT

selected species: Sus scrofa



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Sus scrofa GSM636848 TGAGGTAGGAGGTTGTATAGTT CTATACGGCCTCCTAGCTTTCC up 3 0


Secondary structure

TCTGTCTGTCCACCTGCCGCGCGCCCCGGGCTGAGGTAGGAGGTTGTATAGTTGAGGAGGACACCCACGGAGATCACTATACGGCCTCCTAGCTTTCCCCAGGCTGCGCCCTGCACGGGACGGCCC
-----------ACCTGCCGCGCGCCCCGGGC 	1
------------CCTGCCGCGCGCCCCGGGC 	2
------------------------------CTGAGGTAGGAGGTTGTATAGTT 	3
------------------------------CTGAGGTAGGAGGTTGTATAGT 	2
-------------------------------TGAGGTAGGAGGTTGTATAG 	759
-------------------------------TGAGGTAGGAGGTTGTATAGT 	5212
-------------------------------TGAGGTAGGAGGTTGTATAGTTGAG 	1
-------------------------------TGAGGTAGGAGGTTGTATAGTT 	11082
-------------------------------TGAGGTAGGAGGTTGTATA 	37
-------------------------------TGAGGTAGGAGGTTGTATAGTTGA 	398
-------------------------------TGAGGTAGGAGGTTGTATAGTTG 	3408
--------------------------------GAGGTAGGAGGTTGTATAGT 	31
--------------------------------GAGGTAGGAGGTTGTATAGTTG 	21
--------------------------------GAGGTAGGAGGTTGTATAG 	4
--------------------------------GAGGTAGGAGGTTGTATAGTTGA 	7
--------------------------------GAGGTAGGAGGTTGTATAGTT 	72
---------------------------------AGGTAGGAGGTTGTATAGTTGA 	3
---------------------------------AGGTAGGAGGTTGTATAGTT 	1
------------------------------------TAGGAGGTTGTATAGTTGAGGAG 	1
------------------------------------TAGGAGGTTGTATAGTTGAGGAGG 	1
--------------------------------------------------------------------------CACTATACGGCCTCCTAGCT 	2
----------------------------------------------------------------------------CTATACGGCCTCCTAGCTTTC 	4
----------------------------------------------------------------------------CTATACGGCCTCCTAGCTTTCC 	17
----------------------------------------------------------------------------CTATACGGCCTCCTAGCTTT 	1
----------------------------------------------------------------------------CTATACGGCCTCCTAGCTT 	1


Overlaps with: MNEST026609
Overlaps with miRBase pre-miRNAs: eca-let-7e ssc-let-7e cfa-let-7e
HuntMi prediction: true miRNA