miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TGAGGTAGTAAGTTGTATTGTT

selected species: Homo sapiens



10 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Homo sapiens GSM569185 TGAGGTAGTAAGTTGTATTGTT CTATACAACTTACTACTTTCCC up 2 0


Secondary structure

AGGATTCTGCTCATGCCAGGGTGAGGTAGTAAGTTGTATTGTTGTGGGGTAGGGATATTAGGCCCCAATTAGAAGATAACTATACAACTTACTACTTTCCCTGGTGTGTGGCATATTCA
---------------------TGAGGTAGTAAGTTGTATTGTT 	877
---------------------TGAGGTAGTAAGTTGTATTG 	61
---------------------TGAGGTAGTAAGTTGTATTGT 	165
---------------------TGAGGTAGTAAGTTGTATTGTTG 	4
---------------------TGAGGTAGTAAGTTGTATT 	6
-----------------------AGGTAGTAAGTTGTATTGT 	1
-------------------------------------------------------------------------------CTATACAACTTACTACTTTCC 	2
--------------------------------------------------------------------------------TATACAACTTACTACTTTCC 	4
--------------------------------------------------------------------------------TATACAACTTACTACTTTC 	2

Overlaps with: MNEST027500 MNEST027701 MNEST028291 MNEST030078 MNEST030801
Overlaps with miRBase pre-miRNAs: ptr-mir-98 ppy-mir-98 hsa-mir-98 age-mir-98 ggo-mir-98 mml-mir-98 ppa-mir-98
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Homo sapiens GSM565979-9647 TGAGGTAGTAAGTTGTATTGTT CTATACAACTTACTACTTTCCC up 2 0


Secondary structure

AGGATTCTGCTCATGCCAGGGTGAGGTAGTAAGTTGTATTGTTGTGGGGTAGGGATATTAGGCCCCAATTAGAAGATAACTATACAACTTACTACTTTCCCTGGTGTGTGGCATATTCA
---------------------TGAGGTAGTAAGTTGTATTGTT 	1608
---------------------TGAGGTAGTAAGTTGTATTGT 	129
---------------------TGAGGTAGTAAGTTGTATTG 	26
---------------------TGAGGTAGTAAGTTGTATT 	11
---------------------TGAGGTAGTAAGTTGTATTGTTG 	7
----------------------GAGGTAGTAAGTTGTATTGTT 	3
----------------------GAGGTAGTAAGTTGTATTGT 	1

Overlaps with: MNEST027500 MNEST027701 MNEST028291 MNEST030078 MNEST030801
Overlaps with miRBase pre-miRNAs: ptr-mir-98 ppy-mir-98 hsa-mir-98 age-mir-98 ggo-mir-98 mml-mir-98 ppa-mir-98
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Homo sapiens GSM494810_Normal_2 TGAGGTAGTAAGTTGTATTGTT CTATACAACTTACTACTTTCCC up 2 0


Secondary structure

AGGATTCTGCTCATGCCAGGGTGAGGTAGTAAGTTGTATTGTTGTGGGGTAGGGATATTAGGCCCCAATTAGAAGATAACTATACAACTTACTACTTTCCCTGGTGTGTGGCATATTCA
---------------------TGAGGTAGTAAGTTGTATTGTTG 	6
---------------------TGAGGTAGTAAGTTGTATTGTT 	559
---------------------TGAGGTAGTAAGTTGTATTGT 	81
---------------------TGAGGTAGTAAGTTGTATTG 	21
---------------------TGAGGTAGTAAGTTGTATT 	8
-------------------------------------------------------------------------------CTATACAACTTACTACTTTCC 	1

Overlaps with: MNEST027500 MNEST027701 MNEST028291 MNEST030078 MNEST030801
Overlaps with miRBase pre-miRNAs: ptr-mir-98 ppy-mir-98 hsa-mir-98 age-mir-98 ggo-mir-98 mml-mir-98 ppa-mir-98
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Homo sapiens GSM494809_Normal_1 TGAGGTAGTAAGTTGTATTGTT CTATACAACTTACTACTTTCCC up 2 0


Secondary structure

AGGATTCTGCTCATGCCAGGGTGAGGTAGTAAGTTGTATTGTTGTGGGGTAGGGATATTAGGCCCCAATTAGAAGATAACTATACAACTTACTACTTTCCCTGGTGTGTGGCATATTCA
--GATTCTGCTCATGCCAGGG 	1
---------------------TGAGGTAGTAAGTTGTATTGTT 	49
---------------------TGAGGTAGTAAGTTGTATTGT 	7
---------------------TGAGGTAGTAAGTTGTATTGTTG 	2
----------------------------------------------------------------------------------------------------CTGGTGTGTGGCATATTCA 	1

Overlaps with: MNEST027500 MNEST027701 MNEST028291 MNEST030078 MNEST030801
Overlaps with miRBase pre-miRNAs: ptr-mir-98 ppy-mir-98 hsa-mir-98 age-mir-98 ggo-mir-98 mml-mir-98 ppa-mir-98
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Homo sapiens GSM565978-9532 TGAGGTAGTAAGTTGTATTGTT CTATACAACTTACTACTTTCCC up 2 0


Secondary structure

AGGATTCTGCTCATGCCAGGGTGAGGTAGTAAGTTGTATTGTTGTGGGGTAGGGATATTAGGCCCCAATTAGAAGATAACTATACAACTTACTACTTTCCCTGGTGTGTGGCATATTCA
---------------------TGAGGTAGTAAGTTGTATTGTTG 	28
---------------------TGAGGTAGTAAGTTGTATTGTT 	4420
---------------------TGAGGTAGTAAGTTGTATTGT 	257
---------------------TGAGGTAGTAAGTTGTATTG 	65
---------------------TGAGGTAGTAAGTTGTATT 	8
----------------------GAGGTAGTAAGTTGTATTGTT 	14
-----------------------AGGTAGTAAGTTGTATTGTTGT 	1
-----------------------AGGTAGTAAGTTGTATTGT 	1
-------------------------------------------GTGGGGTAGGGATATTAGGCCCCA 	1

Overlaps with: MNEST027500 MNEST027701 MNEST028291 MNEST030078 MNEST030801
Overlaps with miRBase pre-miRNAs: ptr-mir-98 ppy-mir-98 hsa-mir-98 age-mir-98 ggo-mir-98 mml-mir-98 ppa-mir-98
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Homo sapiens GSM569186 TGAGGTAGTAAGTTGTATTGTT CTATACAACTTACTACTTTCCC up 2 0


Secondary structure

AGGATTCTGCTCATGCCAGGGTGAGGTAGTAAGTTGTATTGTTGTGGGGTAGGGATATTAGGCCCCAATTAGAAGATAACTATACAACTTACTACTTTCCCTGGTGTGTGGCATATTCA
--GATTCTGCTCATGCCAGGG 	1
---------------------TGAGGTAGTAAGTTGTATTGTTG 	2
---------------------TGAGGTAGTAAGTTGTATTGTT 	848
---------------------TGAGGTAGTAAGTTGTATTGT 	145
---------------------TGAGGTAGTAAGTTGTATTG 	50
---------------------TGAGGTAGTAAGTTGTATT 	12
-----------------------AGGTAGTAAGTTGTATTGT 	1
-----------------------AGGTAGTAAGTTGTATTGTTGT 	2
-------------------------------------------------------------------------------CTATACAACTTACTACTTTCC 	9
--------------------------------------------------------------------------------TATACAACTTACTACTTTCC 	2
--------------------------------------------------------------------------------TATACAACTTACTACTTTC 	2
----------------------------------------------------------------------------------------------------CTGGTGTGTGGCATATTCA 	1

Overlaps with: MNEST027500 MNEST027701 MNEST028291 MNEST030078 MNEST030801
Overlaps with miRBase pre-miRNAs: ptr-mir-98 ppy-mir-98 hsa-mir-98 age-mir-98 ggo-mir-98 mml-mir-98 ppa-mir-98
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Homo sapiens GSM569187 TGAGGTAGTAAGTTGTATTGTT CTATACAACTTACTACTTTCCC up 2 0


Secondary structure

AGGATTCTGCTCATGCCAGGGTGAGGTAGTAAGTTGTATTGTTGTGGGGTAGGGATATTAGGCCCCAATTAGAAGATAACTATACAACTTACTACTTTCCCTGGTGTGTGGCATATTCA
---------------------TGAGGTAGTAAGTTGTATTGTT 	672
---------------------TGAGGTAGTAAGTTGTATTGT 	143
---------------------TGAGGTAGTAAGTTGTATTG 	112
---------------------TGAGGTAGTAAGTTGTATTGTTG 	2
---------------------TGAGGTAGTAAGTTGTATTGTTGT 	1
---------------------TGAGGTAGTAAGTTGTATT 	20
------------------------GGTAGTAAGTTGTATTGTT 	1
--------------------------TAGTAAGTTGTATTGTTGTGGG 	1
-------------------------------------------------------------------------------CTATACAACTTACTACTTTCC 	7
-------------------------------------------------------------------------------CTATACAACTTACTACTTT 	1
--------------------------------------------------------------------------------TATACAACTTACTACTTTCC 	4

Overlaps with: MNEST027500 MNEST027701 MNEST028291 MNEST030078 MNEST030801
Overlaps with miRBase pre-miRNAs: ptr-mir-98 ppy-mir-98 hsa-mir-98 age-mir-98 ggo-mir-98 mml-mir-98 ppa-mir-98
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Homo sapiens GSM494811_K562 TGAGGTAGTAAGTTGTATTGTT CTATACAACTTACTACTTTCCC up 2 0


Secondary structure

AGGATTCTGCTCATGCCAGGGTGAGGTAGTAAGTTGTATTGTTGTGGGGTAGGGATATTAGGCCCCAATTAGAAGATAACTATACAACTTACTACTTTCCCTGGTGTGTGGCATATTCA
---------------------TGAGGTAGTAAGTTGTATTGTT 	23
---------------------TGAGGTAGTAAGTTGTATTGT 	4
---------------------TGAGGTAGTAAGTTGTATT 	1

Overlaps with: MNEST027500 MNEST027701 MNEST028291 MNEST030078 MNEST030801
Overlaps with miRBase pre-miRNAs: ptr-mir-98 ppy-mir-98 hsa-mir-98 age-mir-98 ggo-mir-98 mml-mir-98 ppa-mir-98
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Homo sapiens GSM569189 TGAGGTAGTAAGTTGTATTGTT CTATACAACTTACTACTTTCCC up 2 0


Secondary structure

AGGATTCTGCTCATGCCAGGGTGAGGTAGTAAGTTGTATTGTTGTGGGGTAGGGATATTAGGCCCCAATTAGAAGATAACTATACAACTTACTACTTTCCCTGGTGTGTGGCATATTCA
---------------------TGAGGTAGTAAGTTGTATTGTT 	258
---------------------TGAGGTAGTAAGTTGTATTG 	88
---------------------TGAGGTAGTAAGTTGTATTGT 	125
---------------------TGAGGTAGTAAGTTGTATTGTTG 	2
---------------------TGAGGTAGTAAGTTGTATT 	20
----------------------GAGGTAGTAAGTTGTATTGTT 	1
--------------------------TAGTAAGTTGTATTGTTGTGGG 	3
--------------------------------------------------------------------------------TATACAACTTACTACTTTCC 	1

Overlaps with: MNEST027500 MNEST027701 MNEST028291 MNEST030078 MNEST030801
Overlaps with miRBase pre-miRNAs: ptr-mir-98 ppy-mir-98 hsa-mir-98 age-mir-98 ggo-mir-98 mml-mir-98 ppa-mir-98
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Homo sapiens GSM494812_HL60 TGAGGTAGTAAGTTGTATTGTT CTATACAACTTACTACTTTCCC up 2 0


Secondary structure

AGGATTCTGCTCATGCCAGGGTGAGGTAGTAAGTTGTATTGTTGTGGGGTAGGGATATTAGGCCCCAATTAGAAGATAACTATACAACTTACTACTTTCCCTGGTGTGTGGCATATTCA
---------------------TGAGGTAGTAAGTTGTATTGTTG 	9
---------------------TGAGGTAGTAAGTTGTATTGTT 	2697
---------------------TGAGGTAGTAAGTTGTATTGT 	192
---------------------TGAGGTAGTAAGTTGTATTG 	23
---------------------TGAGGTAGTAAGTTGTATT 	5
---------------------TGAGGTAGTAAGTTGTATTGTTGT 	1
----------------------GAGGTAGTAAGTTGTATTGTT 	4
-----------------------AGGTAGTAAGTTGTATTGTT 	1
-----------------------------------------------------------------------------AACTATACAACTTACTACTTTC 	2

Overlaps with: MNEST027500 MNEST027701 MNEST028291 MNEST030078 MNEST030801
Overlaps with miRBase pre-miRNAs: ptr-mir-98 ppy-mir-98 hsa-mir-98 age-mir-98 ggo-mir-98 mml-mir-98 ppa-mir-98
HuntMi prediction: true miRNA