miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGAGGTAGTAAGTTGTATTGTT

selected species: Sus scrofa



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Sus scrofa GSM636848 TGAGGTAGTAAGTTGTATTGTT CTATACAACTTACTACTTTCCC up 2 0


Secondary structure

AGGATTCTGCTCATGCCGGGGTGAGGTAGTAAGTTGTATTGTTGTGGGGTAGGGATTTTAGGCCCCAATTAGAAGATAACTATACAACTTACTACTTTCCCTGGGGTGTAGCATGTTCA
AGGATTCTGCTCATGCCGGGG 	1
---------------------TGAGGTAGTAAGTTGTATTGT 	870
---------------------TGAGGTAGTAAGTTGTATTG 	42
---------------------TGAGGTAGTAAGTTGTATT 	9
---------------------TGAGGTAGTAAGTTGTATTGTTG 	63
---------------------TGAGGTAGTAAGTTGTATTGTTGT 	2
---------------------TGAGGTAGTAAGTTGTATTGTT 	2094
----------------------GAGGTAGTAAGTTGTATTG 	1
----------------------GAGGTAGTAAGTTGTATTGT 	2
----------------------GAGGTAGTAAGTTGTATTGTT 	19
------------------------GGTAGTAAGTTGTATTGTT 	81

Overlaps with: MNEST026672
Overlaps with miRBase pre-miRNAs: ssc-mir-98 cfa-mir-98
HuntMi prediction: true miRNA