miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGAGGTAGTAAGTTGTGTTGTT

selected species: Danio rerio



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540645 TGAGGTAGTAAGTTGTGTTGTT CTATACAATTTACTGCCTTCCA up 2 0


Secondary structure

CAGCTTTAATATGTTGTCGTCTGGAGTTGGCTGTGTTGTGGTGAGGTAGTAAGTTGTGTTGTTGTTGGGGATCAGTATAGTATGGCCCTTGAAGGAGATAACTATACAATTTACTGCCTTCCATAATGCAGACTCTCAATCACACGTCCTGCTTTTTAATA
-----------------------------------------TGAGGTAGTAAGTTGTGTTGTT 	5

Overlaps with: MNEST034181
Overlaps with miRBase pre-miRNAs: dre-let-7h
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540643 TGAGGTAGTAAGTTGTGTTGTT CTATACAATTTACTGCCTTCCA up 2 0


Secondary structure

CAGCTTTAATATGTTGTCGTCTGGAGTTGGCTGTGTTGTGGTGAGGTAGTAAGTTGTGTTGTTGTTGGGGATCAGTATAGTATGGCCCTTGAAGGAGATAACTATACAATTTACTGCCTTCCATAATGCAGACTCTCAATCACACGTCCTGCTTTTTAATA
-----------------------------------------TGAGGTAGTAAGTTGTGTTGTT 	16
-----------------------------------------TGAGGTAGTAAGTTGTGTTG 	1

Overlaps with: MNEST034181
Overlaps with miRBase pre-miRNAs: dre-let-7h
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Danio rerio GSM540646 TGAGGTAGTAAGTTGTGTTGTT CTATACAATTTACTGCCTTCCA up 2 0


Secondary structure

CAGCTTTAATATGTTGTCGTCTGGAGTTGGCTGTGTTGTGGTGAGGTAGTAAGTTGTGTTGTTGTTGGGGATCAGTATAGTATGGCCCTTGAAGGAGATAACTATACAATTTACTGCCTTCCATAATGCAGACTCTCAATCACACGTCCTGCTTTTTAATA
-----------------------------------------TGAGGTAGTAAGTTGTGTTGTT 	33
-----------------------------------------------------------------------------------------------------CTATACAATTTACTGCCTTCC 	1

Overlaps with: MNEST034181
Overlaps with miRBase pre-miRNAs: dre-let-7h
HuntMi prediction: true miRNA