miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TGAGGTAGTAGATTGAATAGTT

selected species: Danio rerio

10 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Danio rerio	GSM540644	TGAGGTAGTAGATTGAATAGTT	CTATACAATCTACTGTCTTTCC	up	2	0

Secondary structure

CTGCTCTGCTGTTCTTGGGGCTGAGGTAGTAGATTGAATAGTTGTGGAGCCCTGCGCTCTCTCTCTGAGATAACTATACAATCTACTGTCTTTCCTAAGGCGACAGCCAAATC
--------------------CTGAGGTAGTAGATTGAATAGTT 	1
--------------------CTGAGGTAGTAGATTGAATAG 	1
---------------------TGAGGTAGTAGATTGAATAGTTGTG 	1
---------------------TGAGGTAGTAGATTGAATAGTTGT 	1
---------------------TGAGGTAGTAGATTGAATAGTT 	26
---------------------TGAGGTAGTAGATTGAATAGT 	1

Overlaps with: MNEST034176 MNEST034177
Overlaps with miRBase pre-miRNAs: dre-let-7e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Danio rerio	GSM540644	TGAGGTAGTAGATTGAATAGTT	CTATACAATCTACTGTCTTTCT	up	2	0

Secondary structure

GCCTTGTCAAGTTTGTTTCTGTCCCCTAAGCTGAGGTAGTAGATTGAATAGTTGTGGAGTATAAAACCTCCCTTTGAGATAACTATACAATCTACTGTCTTTCTTTAGGGATGCAGATTAACCAGCTGAAGA
------------------------------CTGAGGTAGTAGATTGAATAGTT 	1
------------------------------CTGAGGTAGTAGATTGAATAG 	1
-------------------------------TGAGGTAGTAGATTGAATAGTTGTG 	1
-------------------------------TGAGGTAGTAGATTGAATAGTTGT 	1
-------------------------------TGAGGTAGTAGATTGAATAGTT 	26
-------------------------------TGAGGTAGTAGATTGAATAGT 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Danio rerio	GSM540645	TGAGGTAGTAGATTGAATAGTT	CTATACAATCTACTGTCTTTCC	up	2	0

Secondary structure

CTGCTCTGCTGTTCTTGGGGCTGAGGTAGTAGATTGAATAGTTGTGGAGCCCTGCGCTCTCTCTCTGAGATAACTATACAATCTACTGTCTTTCCTAAGGCGACAGCCAAATC
--------------------CTGAGGTAGTAGATTGAATAGTT 	9
--------------------CTGAGGTAGTAGATTGAATAGT 	6
---------------------TGAGGTAGTAGATTGAATAGTT 	1605
---------------------TGAGGTAGTAGATTGAATAGT 	27
---------------------TGAGGTAGTAGATTGAATAG 	4
----------------------GAGGTAGTAGATTGAATAGTT 	5

Overlaps with: MNEST034176 MNEST034177
Overlaps with miRBase pre-miRNAs: dre-let-7e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Danio rerio	GSM540645	TGAGGTAGTAGATTGAATAGTT	CTATACAATCTACTGTCTTTCT	up	2	0

Secondary structure

GCCTTGTCAAGTTTGTTTCTGTCCCCTAAGCTGAGGTAGTAGATTGAATAGTTGTGGAGTATAAAACCTCCCTTTGAGATAACTATACAATCTACTGTCTTTCTTTAGGGATGCAGATTAACCAGCTGAAGA
------------------------------CTGAGGTAGTAGATTGAATAGTT 	9
------------------------------CTGAGGTAGTAGATTGAATAGT 	6
-------------------------------TGAGGTAGTAGATTGAATAGTT 	1605
-------------------------------TGAGGTAGTAGATTGAATAGT 	27
-------------------------------TGAGGTAGTAGATTGAATAG 	4
--------------------------------GAGGTAGTAGATTGAATAGTT 	5
-----------------------------------------------------------------------------------TATACAATCTACTGTCTTTCTT 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Danio rerio	GSM540642	TGAGGTAGTAGATTGAATAGTT	CTATACAATCTACTGTCTTTCC	up	2	0

Secondary structure

CTGCTCTGCTGTTCTTGGGGCTGAGGTAGTAGATTGAATAGTTGTGGAGCCCTGCGCTCTCTCTCTGAGATAACTATACAATCTACTGTCTTTCCTAAGGCGACAGCCAAATC
---------------------TGAGGTAGTAGATTGAATAGTT 	9
---------------------TGAGGTAGTAGATTGAATAGT 	1

Overlaps with: MNEST034176 MNEST034177
Overlaps with miRBase pre-miRNAs: dre-let-7e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Danio rerio	GSM540642	TGAGGTAGTAGATTGAATAGTT	CTATACAATCTACTGTCTTTCT	up	2	0

Secondary structure

GCCTTGTCAAGTTTGTTTCTGTCCCCTAAGCTGAGGTAGTAGATTGAATAGTTGTGGAGTATAAAACCTCCCTTTGAGATAACTATACAATCTACTGTCTTTCTTTAGGGATGCAGATTAACCAGCTGAAGA
-------------------------------TGAGGTAGTAGATTGAATAGTT 	9
-------------------------------TGAGGTAGTAGATTGAATAGT 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Danio rerio	GSM540643	TGAGGTAGTAGATTGAATAGTT	CTATACAATCTACTGTCTTTCC	up	2	0

Secondary structure

CTGCTCTGCTGTTCTTGGGGCTGAGGTAGTAGATTGAATAGTTGTGGAGCCCTGCGCTCTCTCTCTGAGATAACTATACAATCTACTGTCTTTCCTAAGGCGACAGCCAAATC
--------------------CTGAGGTAGTAGATTGAATAGTT 	1
---------------------TGAGGTAGTAGATTGAATAGTT 	72
---------------------TGAGGTAGTAGATTGAATAGT 	3

Overlaps with: MNEST034176 MNEST034177
Overlaps with miRBase pre-miRNAs: dre-let-7e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Danio rerio	GSM540643	TGAGGTAGTAGATTGAATAGTT	CTATACAATCTACTGTCTTTCT	up	2	0

Secondary structure

GCCTTGTCAAGTTTGTTTCTGTCCCCTAAGCTGAGGTAGTAGATTGAATAGTTGTGGAGTATAAAACCTCCCTTTGAGATAACTATACAATCTACTGTCTTTCTTTAGGGATGCAGATTAACCAGCTGAAGA
------------------------------CTGAGGTAGTAGATTGAATAGTT 	1
-------------------------------TGAGGTAGTAGATTGAATAGTT 	72
-------------------------------TGAGGTAGTAGATTGAATAGT 	3

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Danio rerio	GSM540646	TGAGGTAGTAGATTGAATAGTT	CTATACAATCTACTGTCTTTCC	up	2	0

Secondary structure

CTGCTCTGCTGTTCTTGGGGCTGAGGTAGTAGATTGAATAGTTGTGGAGCCCTGCGCTCTCTCTCTGAGATAACTATACAATCTACTGTCTTTCCTAAGGCGACAGCCAAATC
--------------------CTGAGGTAGTAGATTGAATAGTT 	140
--------------------CTGAGGTAGTAGATTGAATAGT 	62
--------------------CTGAGGTAGTAGATTGAATAG 	1
---------------------TGAGGTAGTAGATTGAATAGTT 	10728
---------------------TGAGGTAGTAGATTGAATAGTTG 	4
---------------------TGAGGTAGTAGATTGAATAGT 	72
---------------------TGAGGTAGTAGATTGAATAG 	8
----------------------GAGGTAGTAGATTGAATAGTT 	9
-----------------------AGGTAGTAGATTGAATAGTT 	1

Overlaps with: MNEST034176 MNEST034177
Overlaps with miRBase pre-miRNAs: dre-let-7e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Danio rerio	GSM540646	TGAGGTAGTAGATTGAATAGTT	CTATACAATCTACTGTCTTTCT	up	2	0

Secondary structure

GCCTTGTCAAGTTTGTTTCTGTCCCCTAAGCTGAGGTAGTAGATTGAATAGTTGTGGAGTATAAAACCTCCCTTTGAGATAACTATACAATCTACTGTCTTTCTTTAGGGATGCAGATTAACCAGCTGAAGA
------------------------------CTGAGGTAGTAGATTGAATAGTT 	140
------------------------------CTGAGGTAGTAGATTGAATAGT 	62
------------------------------CTGAGGTAGTAGATTGAATAG 	1
-------------------------------TGAGGTAGTAGATTGAATAGTT 	10728
-------------------------------TGAGGTAGTAGATTGAATAGTTG 	4
-------------------------------TGAGGTAGTAGATTGAATAGT 	72
-------------------------------TGAGGTAGTAGATTGAATAG 	8
--------------------------------GAGGTAGTAGATTGAATAGTT 	9
---------------------------------AGGTAGTAGATTGAATAGTT 	1
----------------------------------------------------------------------------------CTATACAATCTACTGTCTTTCT 	3

HuntMi prediction: true miRNA